Wall clock time and date at job start Tue Mar 9 2021 13:43:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53000 * 109.47007 * 2 1 4 4 C 1.52997 * 109.47314 * 239.99883 * 2 1 3 5 5 O 1.45201 * 109.47346 * 120.00147 * 2 1 3 6 6 C 1.34638 * 116.99819 * 59.99666 * 5 2 1 7 7 O 1.21513 * 120.00208 * 0.02562 * 6 5 2 8 8 N 1.34777 * 119.99834 * 179.72501 * 6 5 2 9 9 C 1.46499 * 120.00199 * 180.27541 * 8 6 5 10 10 H 1.09004 * 112.84450 * 25.33375 * 9 8 6 11 11 C 1.53778 * 113.61783 * 156.52956 * 9 8 6 12 12 C 1.53780 * 87.08089 * 139.98334 * 11 9 8 13 13 H 1.09006 * 113.61383 * 220.02244 * 12 11 9 14 14 N 1.46500 * 113.61454 * 89.20358 * 12 11 9 15 15 S 1.65596 * 120.00036 * 144.99926 * 14 12 11 16 16 O 1.42103 * 106.40102 * 178.54078 * 15 14 12 17 17 O 1.42097 * 106.40182 * 311.45865 * 15 14 12 18 18 C 1.76195 * 107.21966 * 65.00058 * 15 14 12 19 19 C 1.33384 * 122.54065 * 269.70964 * 18 15 14 20 20 S 1.75881 * 109.59425 * 179.90383 * 19 18 15 21 21 C 1.75876 * 90.96933 * 0.30403 * 20 19 18 22 22 C 1.50707 * 125.20134 * 179.87023 * 21 20 19 23 23 O 1.42899 * 109.47492 * 119.95670 * 22 21 20 24 24 Si 1.86301 * 109.47094 * 359.95162 * 22 21 20 25 25 C 1.33384 * 109.59635 * 359.82521 * 21 20 19 26 26 C 1.53782 * 113.61551 * 254.14381 * 9 8 6 27 27 H 1.08997 * 109.47392 * 299.99655 * 1 2 3 28 28 H 1.08999 * 109.47056 * 59.99890 * 1 2 3 29 29 H 1.08999 * 109.47175 * 179.97438 * 1 2 3 30 30 H 1.08997 * 109.47042 * 180.02562 * 3 2 1 31 31 H 1.08999 * 109.47303 * 299.99959 * 3 2 1 32 32 H 1.09003 * 109.46990 * 60.00348 * 3 2 1 33 33 H 1.08999 * 109.47400 * 300.00352 * 4 2 1 34 34 H 1.09013 * 109.46945 * 59.99983 * 4 2 1 35 35 H 1.08997 * 109.47343 * 179.97438 * 4 2 1 36 36 H 0.97001 * 119.99727 * 0.28438 * 8 6 5 37 37 H 1.08993 * 113.61621 * 254.53317 * 11 9 8 38 38 H 1.09007 * 113.60903 * 25.43911 * 11 9 8 39 39 H 0.97000 * 119.99753 * 325.00577 * 14 12 11 40 40 H 1.08008 * 125.20079 * 0.02562 * 19 18 15 41 41 H 1.08999 * 109.46832 * 239.95549 * 22 21 20 42 42 H 0.96703 * 113.99255 * 299.99688 * 23 22 21 43 43 H 1.48503 * 109.99948 * 180.02562 * 24 22 21 44 44 H 1.48501 * 109.99972 * 301.32025 * 24 22 21 45 45 H 1.07996 * 122.53931 * 180.02562 * 25 21 20 46 46 H 1.08993 * 113.61558 * 334.55955 * 26 9 8 47 47 H 1.08995 * 113.61588 * 105.46882 * 26 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0400 -0.7213 -1.2492 5 8 2.0140 -0.6845 1.1855 6 6 1.6522 -1.9723 1.3383 7 8 0.9515 -2.5097 0.5035 8 7 2.0722 -2.6672 2.4140 9 6 1.6835 -4.0703 2.5772 10 1 1.4564 -4.5594 1.6300 11 6 2.6412 -4.8748 3.4719 12 6 1.3939 -5.5530 4.0626 13 1 1.4493 -5.7062 5.1404 14 7 0.9818 -6.7574 3.3373 15 16 0.3329 -8.0388 4.1614 16 8 0.0096 -9.0206 3.1863 17 8 1.1992 -8.2898 5.2594 18 6 -1.1966 -7.4969 4.8479 19 6 -1.2850 -6.9525 6.0624 20 16 -2.9599 -6.5362 6.4016 21 6 -3.4618 -7.1512 4.8322 22 6 -4.8771 -7.1586 4.3142 23 8 -4.9484 -6.3896 3.1119 24 14 -6.0105 -6.4176 5.5936 25 6 -2.3983 -7.6090 4.1701 26 6 0.6111 -4.2908 3.6571 27 1 -0.3634 0.5138 0.8900 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0276 -0.0005 30 1 3.1299 1.4425 -0.0005 31 1 1.6766 1.9564 -0.8900 32 1 1.6766 1.9563 0.8900 33 1 1.6767 -1.7489 -1.2493 34 1 1.6766 -0.2074 -2.1393 35 1 3.1300 -0.7209 -1.2494 36 1 2.6318 -2.2383 3.0802 37 1 3.2876 -5.5557 2.9182 38 1 3.1863 -4.2619 4.1899 39 1 1.0891 -6.8041 2.3744 40 1 -0.4548 -6.7903 6.7340 41 1 -5.1831 -8.1843 4.1081 42 1 -4.6893 -5.4643 3.2210 43 1 -7.4094 -6.4197 5.0951 44 1 -5.9217 -7.1895 6.8591 45 1 -2.4693 -8.0347 3.1801 46 1 0.6002 -3.5182 4.4258 47 1 -0.3790 -4.5010 3.2527 There are 67 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 67 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_40_13941014_15065232.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 13:43:12 Heat of formation + Delta-G solvation = -124.310458 kcal Electronic energy + Delta-G solvation = -32771.611864 eV Core-core repulsion = 28176.021936 eV Total energy + Delta-G solvation = -4595.589928 eV No. of doubly occupied orbitals = 67 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 391.105 amu Computer time = 1.09 seconds Orbital eigenvalues (eV) -41.86262 -40.45738 -39.47768 -38.41037 -37.98488 -37.53429 -37.03862 -35.57252 -34.73555 -32.69702 -31.81444 -28.35919 -28.29178 -27.21945 -26.69268 -25.85620 -24.90355 -23.18952 -21.53445 -21.32155 -20.76545 -20.20560 -19.17763 -19.11583 -18.69258 -17.87391 -17.68548 -17.63134 -17.14690 -17.01609 -16.61352 -16.32613 -16.02871 -15.67532 -15.47604 -15.37555 -15.00209 -14.75541 -14.53511 -14.31909 -14.18722 -14.12114 -13.94352 -13.74410 -13.51138 -13.35570 -13.33519 -13.24043 -13.13361 -12.92402 -12.90187 -12.85238 -12.63820 -12.56100 -12.54433 -12.25500 -12.21629 -12.03385 -11.67919 -11.53552 -11.37290 -11.08351 -10.69704 -10.53394 -10.14600 -10.09208 -9.81285 -5.20403 -0.79379 -0.45151 0.35124 0.59642 0.99607 1.16330 1.22175 1.52220 1.77872 1.83712 2.01452 2.67477 3.18859 3.21402 3.39484 3.42582 3.54866 3.64737 3.75572 3.80275 3.85935 3.91734 3.95651 4.00016 4.14971 4.25795 4.37144 4.48030 4.59697 4.61892 4.65106 4.74190 4.77475 4.81516 4.84368 4.88691 4.90046 4.92373 4.98750 5.05068 5.09703 5.10868 5.21473 5.27923 5.33882 5.52195 5.63796 5.96600 6.45548 6.62640 7.38983 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C 0.129 3.871 3 C -0.138 4.138 4 C -0.181 4.181 5 O -0.370 6.370 6 C 0.641 3.359 7 O -0.595 6.595 8 N -0.688 5.688 9 C 0.129 3.871 10 H 0.100 0.900 11 C -0.139 4.139 12 C 0.122 3.878 13 H 0.133 0.867 14 N -1.089 6.089 15 S 2.731 3.269 16 O -0.991 6.991 17 O -0.975 6.975 18 C -0.693 4.693 19 C -0.082 4.082 20 S 0.193 5.807 21 C -0.238 4.238 22 C -0.036 4.036 23 O -0.548 6.548 24 Si 0.736 3.264 25 C -0.057 4.057 26 C -0.161 4.161 27 H 0.063 0.937 28 H 0.084 0.916 29 H 0.064 0.936 30 H 0.069 0.931 31 H 0.096 0.904 32 H 0.071 0.929 33 H 0.064 0.936 34 H 0.084 0.916 35 H 0.061 0.939 36 H 0.419 0.581 37 H 0.088 0.912 38 H 0.128 0.872 39 H 0.427 0.573 40 H 0.210 0.790 41 H 0.117 0.883 42 H 0.396 0.604 43 H -0.271 1.271 44 H -0.260 1.260 45 H 0.145 0.855 46 H 0.118 0.882 47 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.794 8.800 4.484 10.038 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.237 4.237 2 C 0.092 3.908 3 C -0.195 4.195 4 C -0.238 4.238 5 O -0.285 6.285 6 C 0.395 3.605 7 O -0.486 6.486 8 N -0.347 5.347 9 C 0.025 3.975 10 H 0.118 0.882 11 C -0.179 4.179 12 C 0.014 3.986 13 H 0.150 0.850 14 N -0.850 5.850 15 S 2.819 3.181 16 O -0.981 6.981 17 O -0.965 6.965 18 C -0.794 4.794 19 C -0.221 4.221 20 S 0.456 5.544 21 C -0.355 4.355 22 C -0.148 4.148 23 O -0.356 6.356 24 Si 0.638 3.362 25 C -0.085 4.085 26 C -0.201 4.201 27 H 0.082 0.918 28 H 0.103 0.897 29 H 0.083 0.917 30 H 0.088 0.912 31 H 0.115 0.885 32 H 0.090 0.910 33 H 0.082 0.918 34 H 0.103 0.897 35 H 0.080 0.920 36 H 0.257 0.743 37 H 0.106 0.894 38 H 0.146 0.854 39 H 0.264 0.736 40 H 0.227 0.773 41 H 0.134 0.866 42 H 0.247 0.753 43 H -0.197 1.197 44 H -0.186 1.186 45 H 0.163 0.837 46 H 0.136 0.864 47 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges 0.128 7.759 5.800 9.688 hybrid contribution 0.459 -0.849 -1.881 2.114 sum 0.588 6.910 3.919 7.966 Atomic orbital electron populations 1.22467 0.94004 1.03736 1.03483 1.22305 0.94458 0.92502 0.81509 1.21891 1.02428 0.90992 1.04222 1.22481 1.01594 1.02287 0.97455 1.86311 1.71514 1.23520 1.47109 1.18477 0.78718 0.80736 0.82581 1.90909 1.42374 1.70927 1.44425 1.44758 1.54858 1.11982 1.23109 1.22734 0.97092 0.78550 0.99126 0.88160 1.23787 0.96471 0.98446 0.99157 1.21704 0.96143 0.83248 0.97468 0.84976 1.55150 1.77635 1.31707 1.20493 1.00687 0.72803 0.72110 0.72498 1.93569 1.85261 1.57835 1.61478 1.93579 1.64123 1.83726 1.55071 1.29769 1.20941 1.21932 1.06723 1.26275 1.02740 0.95723 0.97339 1.84256 0.99669 1.56183 1.14255 1.25150 1.00652 1.10022 0.99718 1.24622 0.94811 1.00297 0.95106 1.86515 1.90277 1.27279 1.31555 0.94234 0.78719 0.88000 0.75268 1.19610 0.89610 0.98350 1.00977 1.24087 0.98939 0.97919 0.99190 0.91755 0.89729 0.91695 0.91240 0.88524 0.91042 0.91753 0.89675 0.92017 0.74338 0.89382 0.85367 0.73640 0.77267 0.86558 0.75330 1.19695 1.18601 0.83726 0.86400 0.90640 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -0.32 8.37 71.98 0.60 0.28 16 2 C 0.13 0.20 1.13 -10.80 -0.01 0.19 16 3 C -0.14 0.44 8.85 71.98 0.64 1.08 16 4 C -0.18 -0.44 8.37 71.98 0.60 0.17 16 5 O -0.37 -1.25 9.94 -55.48 -0.55 -1.80 16 6 C 0.64 2.60 8.06 129.79 1.05 3.64 16 7 O -0.60 -5.84 11.50 19.80 0.23 -5.61 16 8 N -0.69 2.43 5.37 -567.60 -3.05 -0.62 16 9 C 0.13 -0.70 4.04 45.52 0.18 -0.51 16 10 H 0.10 -0.12 7.47 -2.38 -0.02 -0.14 16 11 C -0.14 1.36 7.62 31.12 0.24 1.60 16 12 C 0.12 -1.07 4.51 45.58 0.21 -0.87 16 13 H 0.13 -1.58 7.77 -2.38 -0.02 -1.59 16 14 N -1.09 5.35 5.73 -166.94 -0.96 4.39 16 15 S 2.73 4.15 5.77 -56.49 -0.33 3.82 16 16 O -0.99 -9.64 17.63 -128.00 -2.26 -11.90 16 17 O -0.98 -5.48 17.16 -128.00 -2.20 -7.68 16 18 C -0.69 0.34 5.86 21.22 0.12 0.47 16 19 C -0.08 0.36 10.70 66.72 0.71 1.08 16 20 S 0.19 -0.90 20.58 -56.49 -1.16 -2.06 16 21 C -0.24 0.16 5.72 24.59 0.14 0.30 16 22 C -0.04 0.03 2.96 71.24 0.21 0.24 16 23 O -0.55 0.03 12.86 -148.98 -1.92 -1.89 16 24 Si 0.74 -2.20 30.97 68.60 2.12 -0.08 16 25 C -0.06 -0.10 9.56 21.21 0.20 0.11 16 26 C -0.16 1.35 7.69 31.18 0.24 1.59 16 27 H 0.06 0.05 8.14 -2.39 -0.02 0.03 16 28 H 0.08 -0.10 8.14 -2.39 -0.02 -0.12 16 29 H 0.06 0.45 5.88 -2.39 -0.01 0.44 16 30 H 0.07 -0.23 8.14 -2.39 -0.02 -0.25 16 31 H 0.10 -0.59 8.14 -2.39 -0.02 -0.61 16 32 H 0.07 -0.26 8.14 -2.39 -0.02 -0.28 16 33 H 0.06 0.49 5.88 -2.39 -0.01 0.48 16 34 H 0.08 -0.06 8.14 -2.38 -0.02 -0.08 16 35 H 0.06 0.11 8.14 -2.39 -0.02 0.09 16 36 H 0.42 -3.62 8.82 -92.71 -0.82 -4.43 16 37 H 0.09 -0.77 8.14 -2.39 -0.02 -0.79 16 38 H 0.13 -1.82 8.11 -2.38 -0.02 -1.84 16 39 H 0.43 -2.70 8.80 -96.75 -0.85 -3.55 16 40 H 0.21 -2.10 8.00 -2.91 -0.02 -2.13 16 41 H 0.12 0.06 7.96 -2.39 -0.02 0.04 16 42 H 0.40 -3.28 8.70 -74.05 -0.64 -3.92 16 43 H -0.27 -0.98 7.11 99.48 0.71 -0.27 16 44 H -0.26 -0.20 7.11 99.48 0.71 0.50 16 45 H 0.15 0.50 7.96 -2.91 -0.02 0.48 16 46 H 0.12 -1.38 8.14 -2.39 -0.02 -1.40 16 47 H 0.07 -0.44 8.14 -2.39 -0.02 -0.46 16 Total: 0.00 -27.69 411.93 -6.17 -33.85 By element: Atomic # 1 Polarization: -18.55 SS G_CDS: -1.24 Total: -19.80 kcal Atomic # 6 Polarization: 4.24 SS G_CDS: 5.14 Total: 9.37 kcal Atomic # 7 Polarization: 7.77 SS G_CDS: -4.00 Total: 3.77 kcal Atomic # 8 Polarization: -22.18 SS G_CDS: -6.69 Total: -28.88 kcal Atomic # 14 Polarization: -2.20 SS G_CDS: 2.12 Total: -0.08 kcal Atomic # 16 Polarization: 3.25 SS G_CDS: -1.49 Total: 1.76 kcal Total: -27.69 -6.17 -33.85 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_40_13941014_15065232.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -90.458 kcal (2) G-P(sol) polarization free energy of solvation -27.687 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -118.145 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.166 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.853 kcal (6) G-S(sol) free energy of system = (1) + (5) -124.310 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.09 seconds