Wall clock time and date at job start Tue Mar 9 2021 14:17:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42902 * 1 3 3 Si 1.86305 * 109.47181 * 2 1 4 4 C 1.50707 * 109.47210 * 119.99631 * 2 1 3 5 5 C 1.33390 * 125.20097 * 64.99980 * 4 2 1 6 6 C 1.38423 * 114.91977 * 180.02562 * 5 4 2 7 7 S 1.76194 * 122.53854 * 180.02562 * 6 5 4 8 8 O 1.42101 * 106.40410 * 23.54362 * 7 6 5 9 9 O 1.42104 * 106.40471 * 156.46454 * 7 6 5 10 10 N 1.65600 * 107.21886 * 270.00498 * 7 6 5 11 11 C 1.46497 * 120.00300 * 65.00098 * 10 7 6 12 12 H 1.09006 * 112.85040 * 346.19287 * 11 10 7 13 13 C 1.53780 * 113.61922 * 117.50031 * 11 10 7 14 14 C 1.53782 * 87.07723 * 89.11823 * 13 11 10 15 15 H 1.09003 * 113.61853 * 270.88243 * 14 13 11 16 16 C 1.50707 * 113.68866 * 139.99578 * 14 13 11 17 17 C 1.38219 * 119.99243 * 142.46470 * 16 14 13 18 18 C 1.38263 * 120.01531 * 180.02562 * 17 16 14 19 19 C 1.38191 * 120.01350 * 359.97438 * 18 17 16 20 20 C 1.38352 * 119.98946 * 359.97438 * 19 18 17 21 21 Br 1.89098 * 120.00796 * 179.97438 * 20 19 18 22 22 C 1.38240 * 119.99371 * 322.18761 * 16 14 13 23 23 C 1.53773 * 87.08625 * 25.43528 * 14 13 11 24 24 C 1.33391 * 114.92048 * 0.02562 * 6 5 4 25 25 S 1.75886 * 109.59495 * 0.24183 * 24 6 5 26 26 H 0.96703 * 113.99495 * 300.00226 * 1 2 3 27 27 H 1.09000 * 109.47459 * 239.99982 * 2 1 3 28 28 H 1.48504 * 109.99805 * 178.68114 * 3 2 1 29 29 H 1.48500 * 109.99808 * 300.00038 * 3 2 1 30 30 H 1.08001 * 122.54022 * 0.05883 * 5 4 2 31 31 H 0.97009 * 120.00142 * 244.99838 * 10 7 6 32 32 H 1.08996 * 113.61654 * 203.66735 * 13 11 10 33 33 H 1.09001 * 113.61528 * 334.57324 * 13 11 10 34 34 H 1.08004 * 119.99190 * 359.97438 * 17 16 14 35 35 H 1.08002 * 119.99392 * 180.02562 * 18 17 16 36 36 H 1.07999 * 120.00982 * 179.97438 * 19 18 17 37 37 H 1.08002 * 120.00418 * 359.97438 * 22 16 14 38 38 H 1.08996 * 113.62053 * 220.02002 * 23 14 13 39 39 H 1.09001 * 113.69160 * 89.12396 * 23 14 13 40 40 H 1.08002 * 125.19887 * 179.97438 * 24 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0501 1.7565 0.0000 4 6 1.9314 -0.7104 1.2306 5 6 1.7534 -2.0051 1.4975 6 6 2.3054 -2.4356 2.6917 7 16 2.1901 -4.1057 3.2414 8 8 1.9861 -4.8975 2.0792 9 8 3.2725 -4.3081 4.1396 10 7 0.8058 -4.2310 4.1415 11 6 -0.5005 -4.0382 3.5071 12 1 -0.4279 -3.5886 2.5167 13 6 -1.3989 -5.2853 3.5552 14 6 -1.9179 -4.7628 4.9052 15 1 -1.3335 -5.1045 5.7595 16 6 -3.4007 -4.9510 5.0977 17 6 -3.8987 -5.2867 6.3426 18 6 -5.2590 -5.4599 6.5196 19 6 -6.1213 -5.2971 5.4521 20 6 -5.6233 -4.9600 4.2061 21 35 -6.8027 -4.7378 2.7448 22 6 -4.2630 -4.7823 4.0305 23 6 -1.5335 -3.3555 4.4192 24 6 2.9312 -1.4904 3.3947 25 16 2.8345 0.0429 2.5385 26 1 -0.3932 0.4418 0.7651 27 1 1.7924 -0.5138 -0.8900 28 1 3.5347 1.7703 0.0321 29 1 1.5615 2.4679 -1.2085 30 1 1.2196 -2.6674 0.8321 31 1 0.8599 -4.4322 5.0890 32 1 -2.1586 -5.3065 2.7739 33 1 -0.8441 -6.2204 3.6330 34 1 -3.2250 -5.4144 7.1771 35 1 -5.6478 -5.7218 7.4926 36 1 -7.1837 -5.4328 5.5904 37 1 -3.8742 -4.5152 3.0589 38 1 -1.0874 -2.7325 5.1943 39 1 -2.3293 -2.8478 3.8741 40 1 3.4186 -1.6424 4.3465 There are 61 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 61 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_40_14189272_15065232.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 14:17:03 Heat of formation + Delta-G solvation = -9.683466 kcal Electronic energy + Delta-G solvation = -28065.052708 eV Core-core repulsion = 23919.340107 eV Total energy + Delta-G solvation = -4145.712601 eV No. of doubly occupied orbitals = 61 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 429.974 amu Computer time = 1.64 seconds Orbital eigenvalues (eV) -41.41031 -39.58068 -39.38968 -38.23535 -37.62799 -36.88414 -34.53737 -33.29061 -31.90389 -31.61862 -30.25351 -27.30500 -26.85034 -26.29529 -24.99557 -23.63994 -22.64700 -21.51054 -20.75322 -20.10135 -19.29999 -18.73316 -17.98606 -17.91215 -17.66924 -17.13064 -16.59856 -16.43164 -16.25795 -15.95784 -15.47939 -15.34076 -15.05808 -14.98077 -14.65448 -14.42639 -14.34107 -14.20826 -14.01313 -13.91259 -13.61940 -13.50495 -13.17782 -13.06393 -12.95702 -12.73045 -12.52623 -12.46368 -12.30008 -12.19835 -11.93465 -11.71849 -11.61266 -11.39594 -11.21480 -10.76397 -10.66645 -10.26780 -9.93325 -9.90006 -9.66004 -5.31530 -0.81357 -0.53432 0.05411 0.20081 0.24112 0.50597 0.64842 0.93765 1.06652 1.45533 1.77542 1.96073 2.50341 2.67338 3.14820 3.25568 3.31338 3.45585 3.48717 3.55759 3.71189 3.75692 3.80288 3.92444 3.94721 4.04157 4.15768 4.19298 4.29331 4.30749 4.45305 4.56385 4.57384 4.60598 4.77202 4.82476 4.83635 4.86435 4.93420 4.99327 5.14169 5.21211 5.31041 5.45968 5.73738 5.78893 6.32823 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.532 6.532 2 C -0.027 4.027 3 Si 0.656 3.344 4 C -0.228 4.228 5 C -0.046 4.046 6 C -0.688 4.688 7 S 2.710 3.290 8 O -0.945 6.945 9 O -0.955 6.955 10 N -1.096 6.096 11 C 0.127 3.873 12 H 0.106 0.894 13 C -0.145 4.145 14 C -0.074 4.074 15 H 0.103 0.897 16 C -0.065 4.065 17 C -0.101 4.101 18 C -0.110 4.110 19 C -0.096 4.096 20 C -0.087 4.087 21 Br -0.049 7.049 22 C -0.089 4.089 23 C -0.135 4.135 24 C -0.081 4.081 25 S 0.159 5.841 26 H 0.380 0.620 27 H 0.127 0.873 28 H -0.238 1.238 29 H -0.231 1.231 30 H 0.157 0.843 31 H 0.420 0.580 32 H 0.099 0.901 33 H 0.083 0.917 34 H 0.129 0.871 35 H 0.132 0.868 36 H 0.132 0.868 37 H 0.134 0.866 38 H 0.081 0.919 39 H 0.098 0.902 40 H 0.186 0.814 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.973 4.251 4.653 6.604 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.337 6.337 2 C -0.140 4.140 3 Si 0.555 3.445 4 C -0.345 4.345 5 C -0.074 4.074 6 C -0.787 4.787 7 S 2.796 3.204 8 O -0.935 6.935 9 O -0.945 6.945 10 N -0.855 5.855 11 C 0.019 3.981 12 H 0.124 0.876 13 C -0.184 4.184 14 C -0.093 4.093 15 H 0.121 0.879 16 C -0.066 4.066 17 C -0.119 4.119 18 C -0.129 4.129 19 C -0.115 4.115 20 C -0.167 4.167 21 Br 0.036 6.964 22 C -0.109 4.109 23 C -0.174 4.174 24 C -0.220 4.220 25 S 0.423 5.577 26 H 0.228 0.772 27 H 0.144 0.856 28 H -0.162 1.162 29 H -0.154 1.154 30 H 0.174 0.826 31 H 0.255 0.745 32 H 0.117 0.883 33 H 0.102 0.898 34 H 0.146 0.854 35 H 0.150 0.850 36 H 0.150 0.850 37 H 0.152 0.848 38 H 0.099 0.901 39 H 0.117 0.883 40 H 0.203 0.797 Dipole moment (debyes) X Y Z Total from point charges -0.732 5.520 2.992 6.321 hybrid contribution -0.381 -1.416 0.402 1.520 sum -1.113 4.104 3.394 5.441 Atomic orbital electron populations 1.86555 1.16418 1.81602 1.49114 1.24455 0.85308 1.09179 0.95085 0.95170 0.82194 0.77227 0.89904 1.25064 1.08742 0.98363 1.02377 1.19628 0.98181 0.94938 0.94683 1.30034 1.15641 1.26449 1.06614 1.01647 0.72157 0.73188 0.73412 1.93624 1.85153 1.65242 1.49460 1.93622 1.51033 1.85017 1.64817 1.55375 1.19811 1.87153 1.23115 1.21639 0.82081 0.97655 0.96722 0.87620 1.23593 0.99106 0.98785 0.96905 1.21596 0.91338 0.97468 0.98861 0.87923 1.19693 0.94951 0.98915 0.93040 1.21231 0.95566 0.98216 0.96911 1.21207 0.93299 0.99516 0.98900 1.21170 1.00672 0.98508 0.91199 1.21830 0.94145 1.07131 0.93559 1.96791 1.61695 1.96407 1.41469 1.20973 0.90964 0.99302 0.99646 1.23463 0.98475 0.95901 0.99611 1.25907 0.97866 0.95575 1.02687 1.84362 1.50788 1.10352 1.12231 0.77215 0.85581 1.16231 1.15391 0.82566 0.74471 0.88315 0.89848 0.85351 0.84991 0.84993 0.84814 0.90053 0.88315 0.79699 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 30. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.53 0.68 12.88 -35.23 -0.45 0.23 16 2 C -0.03 0.03 2.96 36.01 0.11 0.14 16 3 Si 0.66 -1.21 30.98 -169.99 -5.27 -6.48 16 4 C -0.23 0.20 5.70 -36.00 -0.21 0.00 16 5 C -0.05 0.01 9.51 -41.21 -0.39 -0.39 16 6 C -0.69 0.24 5.86 -41.21 -0.24 0.00 16 7 S 2.71 1.29 5.74 -107.50 -0.62 0.67 16 8 O -0.94 -3.54 17.39 -57.17 -0.99 -4.54 16 9 O -0.95 -3.02 17.64 -57.17 -1.01 -4.03 16 10 N -1.10 2.91 5.73 -4.20 -0.02 2.88 16 11 C 0.13 -0.37 4.44 -67.12 -0.30 -0.67 16 12 H 0.11 -0.36 7.97 -51.93 -0.41 -0.77 16 13 C -0.14 0.34 7.26 -25.92 -0.19 0.15 16 14 C -0.07 0.22 3.80 -90.96 -0.35 -0.12 16 15 H 0.10 -0.40 8.06 -51.93 -0.42 -0.82 16 16 C -0.07 0.09 5.29 -104.62 -0.55 -0.46 16 17 C -0.10 0.15 9.71 -39.58 -0.38 -0.24 16 18 C -0.11 0.12 10.05 -39.59 -0.40 -0.27 16 19 C -0.10 0.01 9.79 -39.56 -0.39 -0.37 16 20 C -0.09 -0.04 6.22 -39.52 -0.25 -0.29 16 21 Br -0.05 -0.04 33.70 -68.01 -2.29 -2.34 16 22 C -0.09 0.05 8.34 -39.56 -0.33 -0.28 16 23 C -0.14 0.51 7.33 -25.92 -0.19 0.32 16 24 C -0.08 0.11 10.70 29.04 0.31 0.42 16 25 S 0.16 -0.30 20.60 -107.50 -2.21 -2.51 16 26 H 0.38 -1.99 8.70 45.56 0.40 -1.59 16 27 H 0.13 -0.12 7.96 -51.93 -0.41 -0.54 16 28 H -0.24 -0.10 7.11 56.52 0.40 0.30 16 29 H -0.23 -0.21 7.11 56.52 0.40 0.19 16 30 H 0.16 -0.06 7.96 -52.49 -0.42 -0.48 16 31 H 0.42 -1.88 8.78 -34.47 -0.30 -2.18 16 32 H 0.10 -0.26 6.33 -51.93 -0.33 -0.59 16 33 H 0.08 -0.14 8.14 -51.93 -0.42 -0.56 16 34 H 0.13 -0.41 8.05 -52.48 -0.42 -0.84 16 35 H 0.13 -0.39 8.06 -52.49 -0.42 -0.81 16 36 H 0.13 -0.15 8.06 -52.49 -0.42 -0.57 16 37 H 0.13 -0.22 6.68 -52.49 -0.35 -0.57 16 38 H 0.08 -0.35 8.14 -51.93 -0.42 -0.78 16 39 H 0.10 -0.38 7.72 -51.93 -0.40 -0.78 16 40 H 0.19 -0.60 8.00 -52.49 -0.42 -1.02 16 LS Contribution 384.45 15.07 5.79 5.79 Total: 0.00 -9.57 384.45 -15.20 -24.77 By element: Atomic # 1 Polarization: -8.02 SS G_CDS: -4.38 Total: -12.40 kcal Atomic # 6 Polarization: 1.68 SS G_CDS: -3.74 Total: -2.06 kcal Atomic # 7 Polarization: 2.91 SS G_CDS: -0.02 Total: 2.88 kcal Atomic # 8 Polarization: -5.88 SS G_CDS: -2.46 Total: -8.34 kcal Atomic # 14 Polarization: -1.21 SS G_CDS: -5.27 Total: -6.48 kcal Atomic # 16 Polarization: 0.99 SS G_CDS: -2.83 Total: -1.84 kcal Atomic # 35 Polarization: -0.04 SS G_CDS: -2.29 Total: -2.34 kcal Total LS contribution 5.79 Total: 5.79 kcal Total: -9.57 -15.20 -24.77 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_40_14189272_15065232.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.088 kcal (2) G-P(sol) polarization free energy of solvation -9.572 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.516 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -15.200 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -24.772 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.683 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.64 seconds