Wall clock time and date at job start Tue Mar 9 2021 14:17:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42902 * 1 3 3 Si 1.86305 * 109.47181 * 2 1 4 4 C 1.50707 * 109.47210 * 119.99631 * 2 1 3 5 5 C 1.33390 * 125.20097 * 64.99980 * 4 2 1 6 6 C 1.38423 * 114.91977 * 180.02562 * 5 4 2 7 7 S 1.76194 * 122.53854 * 180.02562 * 6 5 4 8 8 O 1.42101 * 106.40410 * 23.54362 * 7 6 5 9 9 O 1.42104 * 106.40471 * 156.46454 * 7 6 5 10 10 N 1.65600 * 107.21886 * 270.00498 * 7 6 5 11 11 C 1.46497 * 120.00300 * 65.00098 * 10 7 6 12 12 H 1.09006 * 112.85040 * 346.19287 * 11 10 7 13 13 C 1.53780 * 113.61922 * 117.50031 * 11 10 7 14 14 C 1.53782 * 87.07723 * 89.11823 * 13 11 10 15 15 H 1.09003 * 113.61853 * 270.88243 * 14 13 11 16 16 C 1.50707 * 113.68866 * 139.99578 * 14 13 11 17 17 C 1.38219 * 119.99243 * 142.46470 * 16 14 13 18 18 C 1.38263 * 120.01531 * 180.02562 * 17 16 14 19 19 C 1.38191 * 120.01350 * 359.97438 * 18 17 16 20 20 C 1.38352 * 119.98946 * 359.97438 * 19 18 17 21 21 Br 1.89098 * 120.00796 * 179.97438 * 20 19 18 22 22 C 1.38240 * 119.99371 * 322.18761 * 16 14 13 23 23 C 1.53773 * 87.08625 * 25.43528 * 14 13 11 24 24 C 1.33391 * 114.92048 * 0.02562 * 6 5 4 25 25 S 1.75886 * 109.59495 * 0.24183 * 24 6 5 26 26 H 0.96703 * 113.99495 * 300.00226 * 1 2 3 27 27 H 1.09000 * 109.47459 * 239.99982 * 2 1 3 28 28 H 1.48504 * 109.99805 * 178.68114 * 3 2 1 29 29 H 1.48500 * 109.99808 * 300.00038 * 3 2 1 30 30 H 1.08001 * 122.54022 * 0.05883 * 5 4 2 31 31 H 0.97009 * 120.00142 * 244.99838 * 10 7 6 32 32 H 1.08996 * 113.61654 * 203.66735 * 13 11 10 33 33 H 1.09001 * 113.61528 * 334.57324 * 13 11 10 34 34 H 1.08004 * 119.99190 * 359.97438 * 17 16 14 35 35 H 1.08002 * 119.99392 * 180.02562 * 18 17 16 36 36 H 1.07999 * 120.00982 * 179.97438 * 19 18 17 37 37 H 1.08002 * 120.00418 * 359.97438 * 22 16 14 38 38 H 1.08996 * 113.62053 * 220.02002 * 23 14 13 39 39 H 1.09001 * 113.69160 * 89.12396 * 23 14 13 40 40 H 1.08002 * 125.19887 * 179.97438 * 24 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0501 1.7565 0.0000 4 6 1.9314 -0.7104 1.2306 5 6 1.7534 -2.0051 1.4975 6 6 2.3054 -2.4356 2.6917 7 16 2.1901 -4.1057 3.2414 8 8 1.9861 -4.8975 2.0792 9 8 3.2725 -4.3081 4.1396 10 7 0.8058 -4.2310 4.1415 11 6 -0.5005 -4.0382 3.5071 12 1 -0.4279 -3.5886 2.5167 13 6 -1.3989 -5.2853 3.5552 14 6 -1.9179 -4.7628 4.9052 15 1 -1.3335 -5.1045 5.7595 16 6 -3.4007 -4.9510 5.0977 17 6 -3.8987 -5.2867 6.3426 18 6 -5.2590 -5.4599 6.5196 19 6 -6.1213 -5.2971 5.4521 20 6 -5.6233 -4.9600 4.2061 21 35 -6.8027 -4.7378 2.7448 22 6 -4.2630 -4.7823 4.0305 23 6 -1.5335 -3.3555 4.4192 24 6 2.9312 -1.4904 3.3947 25 16 2.8345 0.0429 2.5385 26 1 -0.3932 0.4418 0.7651 27 1 1.7924 -0.5138 -0.8900 28 1 3.5347 1.7703 0.0321 29 1 1.5615 2.4679 -1.2085 30 1 1.2196 -2.6674 0.8321 31 1 0.8599 -4.4322 5.0890 32 1 -2.1586 -5.3065 2.7739 33 1 -0.8441 -6.2204 3.6330 34 1 -3.2250 -5.4144 7.1771 35 1 -5.6478 -5.7218 7.4926 36 1 -7.1837 -5.4328 5.5904 37 1 -3.8742 -4.5152 3.0589 38 1 -1.0874 -2.7325 5.1943 39 1 -2.3293 -2.8478 3.8741 40 1 3.4186 -1.6424 4.3465 There are 61 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 61 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_40_14189272_15065232.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 14:17:03 Heat of formation + Delta-G solvation = -9.138456 kcal Electronic energy + Delta-G solvation = -28065.029075 eV Core-core repulsion = 23919.340107 eV Total energy + Delta-G solvation = -4145.688968 eV No. of doubly occupied orbitals = 61 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 429.974 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -41.22948 -39.48787 -39.24655 -38.37401 -37.51694 -37.03647 -34.40225 -33.21604 -31.80940 -31.48816 -30.19771 -27.20958 -26.60640 -26.11853 -24.92764 -23.51622 -22.51516 -21.45245 -20.62924 -19.97031 -19.20181 -18.72594 -17.88160 -17.82289 -17.60869 -16.98878 -16.50262 -16.33659 -16.11964 -15.92933 -15.41666 -15.21173 -14.95806 -14.82883 -14.52618 -14.31083 -14.27025 -14.12372 -13.94928 -13.77300 -13.54181 -13.35455 -13.33969 -13.22977 -12.93703 -12.64811 -12.53833 -12.30203 -12.22644 -12.06900 -11.76682 -11.66732 -11.50988 -11.28468 -11.12268 -10.65184 -10.49526 -10.17046 -9.81706 -9.80026 -9.57798 -5.20275 -0.80251 -0.45561 0.14219 0.31000 0.35025 0.59943 0.67159 0.98659 1.17186 1.54018 1.85152 2.03264 2.61593 2.67181 3.19962 3.43205 3.50728 3.64013 3.66974 3.72153 3.87990 3.91914 4.01264 4.08852 4.11307 4.24579 4.25780 4.34899 4.39090 4.44685 4.61394 4.66567 4.78978 4.85354 4.91262 4.99173 5.01038 5.05130 5.09873 5.13387 5.24942 5.37410 5.48745 5.62371 5.87956 6.05633 6.67263 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.545 6.545 2 C -0.031 4.031 3 Si 0.733 3.267 4 C -0.234 4.234 5 C -0.058 4.058 6 C -0.693 4.693 7 S 2.727 3.273 8 O -0.984 6.984 9 O -0.984 6.984 10 N -1.083 6.083 11 C 0.123 3.877 12 H 0.108 0.892 13 C -0.152 4.152 14 C -0.071 4.071 15 H 0.116 0.884 16 C -0.066 4.066 17 C -0.105 4.105 18 C -0.115 4.115 19 C -0.110 4.110 20 C -0.102 4.102 21 Br -0.063 7.063 22 C -0.097 4.097 23 C -0.125 4.125 24 C -0.084 4.084 25 S 0.190 5.810 26 H 0.397 0.603 27 H 0.120 0.880 28 H -0.267 1.267 29 H -0.271 1.271 30 H 0.152 0.848 31 H 0.430 0.570 32 H 0.098 0.902 33 H 0.074 0.926 34 H 0.149 0.851 35 H 0.149 0.851 36 H 0.135 0.865 37 H 0.139 0.861 38 H 0.093 0.907 39 H 0.101 0.899 40 H 0.204 0.796 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.753 5.112 6.127 8.170 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.353 6.353 2 C -0.144 4.144 3 Si 0.636 3.364 4 C -0.352 4.352 5 C -0.087 4.087 6 C -0.794 4.794 7 S 2.815 3.185 8 O -0.974 6.974 9 O -0.974 6.974 10 N -0.844 5.844 11 C 0.015 3.985 12 H 0.126 0.874 13 C -0.191 4.191 14 C -0.089 4.089 15 H 0.134 0.866 16 C -0.067 4.067 17 C -0.123 4.123 18 C -0.134 4.134 19 C -0.130 4.130 20 C -0.182 4.182 21 Br 0.023 6.977 22 C -0.117 4.117 23 C -0.164 4.164 24 C -0.223 4.223 25 S 0.454 5.546 26 H 0.248 0.752 27 H 0.137 0.863 28 H -0.193 1.193 29 H -0.196 1.196 30 H 0.170 0.830 31 H 0.268 0.732 32 H 0.116 0.884 33 H 0.092 0.908 34 H 0.166 0.834 35 H 0.167 0.833 36 H 0.153 0.847 37 H 0.157 0.843 38 H 0.112 0.888 39 H 0.119 0.881 40 H 0.221 0.779 Dipole moment (debyes) X Y Z Total from point charges -0.527 6.352 4.503 7.804 hybrid contribution -0.455 -1.646 -0.067 1.709 sum -0.982 4.706 4.436 6.541 Atomic orbital electron populations 1.86520 1.16306 1.82057 1.50407 1.24534 0.85553 1.09490 0.94783 0.94310 0.79241 0.75052 0.87845 1.25166 1.08809 0.98361 1.02863 1.19672 0.98744 0.95316 0.94931 1.29788 1.16822 1.25851 1.06986 1.00791 0.72047 0.73144 0.72514 1.93576 1.85764 1.66914 1.51104 1.93575 1.52745 1.85734 1.65371 1.55038 1.19002 1.86985 1.23415 1.21736 0.81764 0.97675 0.97285 0.87366 1.23644 0.99268 0.98623 0.97581 1.21654 0.90442 0.97942 0.98866 0.86583 1.19883 0.95621 0.98365 0.92868 1.21535 0.95805 0.97486 0.97490 1.21465 0.93502 0.99089 0.99335 1.21333 1.01212 0.99006 0.91409 1.21944 0.94450 1.08303 0.93478 1.96762 1.62230 1.96515 1.42204 1.21113 0.90769 0.99478 1.00337 1.23416 0.97929 0.95565 0.99503 1.26226 0.97141 0.95631 1.03295 1.84256 1.49779 1.09435 1.11105 0.75235 0.86302 1.19260 1.19600 0.83034 0.73203 0.88353 0.90752 0.83372 0.83308 0.84691 0.84297 0.88816 0.88054 0.77900 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.54 1.53 12.88 -148.98 -1.92 -0.39 16 2 C -0.03 0.08 2.96 71.24 0.21 0.29 16 3 Si 0.73 -2.75 30.98 68.60 2.13 -0.63 16 4 C -0.23 0.48 5.70 24.59 0.14 0.62 16 5 C -0.06 0.00 9.51 21.22 0.20 0.20 16 6 C -0.69 0.53 5.86 21.22 0.12 0.65 16 7 S 2.73 4.02 5.74 -56.49 -0.32 3.70 16 8 O -0.98 -8.68 17.39 -128.00 -2.23 -10.90 16 9 O -0.98 -6.62 17.64 -128.00 -2.26 -8.88 16 10 N -1.08 6.03 5.73 -167.19 -0.96 5.08 16 11 C 0.12 -0.76 4.44 45.52 0.20 -0.56 16 12 H 0.11 -0.70 7.97 -2.38 -0.02 -0.72 16 13 C -0.15 0.71 7.26 31.12 0.23 0.93 16 14 C -0.07 0.49 3.80 -11.01 -0.04 0.45 16 15 H 0.12 -1.11 8.06 -2.39 -0.02 -1.13 16 16 C -0.07 0.23 5.29 -19.87 -0.11 0.12 16 17 C -0.11 0.42 9.71 22.27 0.22 0.64 16 18 C -0.12 0.32 10.05 22.26 0.22 0.55 16 19 C -0.11 0.00 9.79 22.29 0.22 0.22 16 20 C -0.10 -0.15 6.22 22.31 0.14 -0.01 16 21 Br -0.06 -0.17 33.70 -20.37 -0.69 -0.86 16 22 C -0.10 0.09 8.34 22.29 0.19 0.28 16 23 C -0.13 1.10 7.33 31.12 0.23 1.32 16 24 C -0.08 0.30 10.70 66.72 0.71 1.02 16 25 S 0.19 -0.91 20.60 -56.49 -1.16 -2.08 16 26 H 0.40 -4.47 8.70 -74.06 -0.64 -5.11 16 27 H 0.12 -0.16 7.96 -2.39 -0.02 -0.18 16 28 H -0.27 -0.24 7.11 99.48 0.71 0.47 16 29 H -0.27 -0.74 7.11 99.48 0.71 -0.03 16 30 H 0.15 0.05 7.96 -2.91 -0.02 0.03 16 31 H 0.43 -4.18 8.78 -96.73 -0.85 -5.03 16 32 H 0.10 -0.46 6.33 -2.39 -0.02 -0.47 16 33 H 0.07 -0.20 8.14 -2.39 -0.02 -0.22 16 34 H 0.15 -1.24 8.05 -2.91 -0.02 -1.27 16 35 H 0.15 -1.02 8.06 -2.91 -0.02 -1.05 16 36 H 0.14 -0.21 8.06 -2.91 -0.02 -0.23 16 37 H 0.14 -0.40 6.68 -2.91 -0.02 -0.42 16 38 H 0.09 -1.01 8.14 -2.39 -0.02 -1.03 16 39 H 0.10 -0.89 7.72 -2.39 -0.02 -0.91 16 40 H 0.20 -1.60 8.00 -2.91 -0.02 -1.62 16 Total: 0.00 -22.30 384.45 -4.87 -27.17 By element: Atomic # 1 Polarization: -18.58 SS G_CDS: -0.35 Total: -18.92 kcal Atomic # 6 Polarization: 3.83 SS G_CDS: 2.88 Total: 6.72 kcal Atomic # 7 Polarization: 6.03 SS G_CDS: -0.96 Total: 5.08 kcal Atomic # 8 Polarization: -13.77 SS G_CDS: -6.40 Total: -20.18 kcal Atomic # 14 Polarization: -2.75 SS G_CDS: 2.13 Total: -0.63 kcal Atomic # 16 Polarization: 3.11 SS G_CDS: -1.49 Total: 1.62 kcal Atomic # 35 Polarization: -0.17 SS G_CDS: -0.69 Total: -0.86 kcal Total: -22.30 -4.87 -27.17 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_40_14189272_15065232.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.029 kcal (2) G-P(sol) polarization free energy of solvation -22.295 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.266 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.872 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -27.168 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.138 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds