Wall clock time and date at job start Tue Mar 9 2021 14:17:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.34777 * 1 3 3 O 1.21279 * 119.99593 * 2 1 4 4 C 1.50701 * 119.99983 * 179.97438 * 2 1 3 5 5 N 1.46494 * 112.85062 * 322.31795 * 4 2 1 6 6 S 1.65601 * 119.99888 * 291.73674 * 5 4 2 7 7 O 1.42101 * 106.40253 * 180.65969 * 6 5 4 8 8 O 1.42103 * 106.40370 * 47.74335 * 6 5 4 9 9 C 1.76194 * 107.22174 * 294.20096 * 6 5 4 10 10 C 1.33391 * 122.53864 * 292.15283 * 9 6 5 11 11 C 1.50703 * 125.20388 * 0.02562 * 10 9 6 12 12 O 1.42904 * 109.46869 * 41.44679 * 11 10 9 13 13 Si 1.86291 * 109.47246 * 161.44975 * 11 10 9 14 14 S 1.75882 * 109.59554 * 179.74927 * 10 9 6 15 15 C 1.75885 * 90.97020 * 0.22727 * 14 10 9 16 16 C 1.33392 * 109.59399 * 0.02562 * 15 14 10 17 17 C 1.53780 * 113.61168 * 191.11619 * 4 2 1 18 18 C 1.53773 * 87.08196 * 270.80347 * 17 4 2 19 19 H 1.09002 * 113.61926 * 89.12171 * 18 17 4 20 20 O 1.42908 * 113.61535 * 220.02057 * 18 17 4 21 21 C 1.53783 * 87.08565 * 334.56805 * 18 17 4 22 22 H 0.97006 * 119.99897 * 184.40045 * 1 2 3 23 23 H 0.97000 * 120.00630 * 4.40642 * 1 2 3 24 24 H 0.97004 * 120.00244 * 111.74116 * 5 4 2 25 25 H 1.09001 * 109.47137 * 281.45147 * 11 10 9 26 26 H 0.96701 * 113.99528 * 67.02951 * 12 11 10 27 27 H 1.48504 * 110.00134 * 184.93835 * 13 11 10 28 28 H 1.48501 * 110.00342 * 306.25264 * 13 11 10 29 29 H 1.08002 * 125.20443 * 180.02562 * 15 14 10 30 30 H 1.08001 * 122.54111 * 180.02562 * 16 15 14 31 31 H 1.09000 * 113.61646 * 25.35693 * 17 4 2 32 32 H 1.09000 * 113.61283 * 156.16864 * 17 4 2 33 33 H 0.96695 * 114.00009 * 180.02562 * 20 18 17 34 34 H 1.08997 * 113.61427 * 270.88913 * 21 18 17 35 35 H 1.08993 * 113.61625 * 139.97819 * 21 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3478 0.0000 0.0000 3 8 1.9541 1.0503 0.0000 4 6 2.1013 -1.3051 0.0006 5 7 1.4605 -2.3316 0.8262 6 16 1.4174 -2.1618 2.4730 7 8 0.7526 -3.3118 2.9777 8 8 0.9772 -0.8350 2.7282 9 6 3.0794 -2.2543 3.0505 10 6 3.7982 -3.3765 2.9913 11 6 3.3119 -4.6915 2.4386 12 8 2.5569 -4.4577 1.2480 13 14 4.7731 -5.7777 2.0441 14 16 5.4028 -3.0847 3.6498 15 6 4.9930 -1.4073 3.9845 16 6 3.7370 -1.1691 3.6037 17 6 3.6066 -1.1471 0.2722 18 6 3.7839 -0.9865 -1.2468 19 1 3.6992 0.0447 -1.5898 20 8 4.9397 -1.6506 -1.7617 21 6 2.4864 -1.7968 -1.4047 22 1 -0.4850 -0.8376 0.0645 23 1 -0.4851 0.8375 -0.0645 24 1 1.0614 -3.1108 0.4084 25 1 2.6811 -5.1853 3.1777 26 1 3.0817 -4.1191 0.5097 27 1 4.3138 -7.0286 1.3886 28 1 5.7175 -5.0554 1.1544 29 1 5.6568 -0.6813 4.4302 30 1 3.2702 -0.2014 3.7139 31 1 3.8564 -0.2498 0.8383 32 1 4.0742 -2.0455 0.6751 33 1 5.0568 -1.5529 -2.7166 34 1 2.6481 -2.8732 -1.4616 35 1 1.8318 -1.4238 -2.1924 There are 55 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 55 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_40_14243766_14772022.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 14:17:23 Heat of formation + Delta-G solvation = -102.676546 kcal Electronic energy + Delta-G solvation = -27388.013201 eV Core-core repulsion = 23415.511865 eV Total energy + Delta-G solvation = -3972.501336 eV No. of doubly occupied orbitals = 55 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 335.042 amu Computer time = 1.22 seconds Orbital eigenvalues (eV) -42.04365 -39.82497 -38.96273 -38.31014 -37.59527 -36.77446 -36.64670 -34.76829 -33.32178 -31.89954 -27.68735 -27.15268 -26.32002 -24.41489 -22.98835 -21.80086 -20.62378 -20.13461 -19.45481 -19.15175 -18.64080 -18.46327 -18.09800 -17.64789 -17.17455 -16.96791 -16.61425 -16.11185 -16.01637 -15.48948 -15.29092 -15.07889 -14.80936 -14.54496 -14.16810 -14.11240 -13.89577 -13.73432 -13.62058 -13.07249 -13.05189 -12.92622 -12.80805 -12.68263 -12.46965 -12.28739 -11.85460 -11.68303 -11.51783 -11.27605 -11.12767 -10.65806 -10.50596 -10.14736 -9.77549 -5.28920 -0.70381 -0.48867 0.30489 0.58802 0.95492 1.12310 1.38553 1.41659 1.70166 1.95831 2.26426 2.68890 2.91346 2.94959 3.12597 3.17334 3.21258 3.42494 3.52264 3.66922 3.88128 4.08153 4.18037 4.32124 4.33663 4.38797 4.39602 4.61461 4.71644 4.74789 4.91148 4.95924 5.12824 5.76911 5.78177 5.94319 6.27137 6.49432 7.19140 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.836 5.836 2 C 0.537 3.463 3 O -0.526 6.526 4 C 0.126 3.874 5 N -1.090 6.090 6 S 2.712 3.288 7 O -0.941 6.941 8 O -0.951 6.951 9 C -0.664 4.664 10 C -0.102 4.102 11 C -0.066 4.066 12 O -0.521 6.521 13 Si 0.670 3.330 14 S 0.162 5.838 15 C -0.208 4.208 16 C -0.074 4.074 17 C -0.129 4.129 18 C 0.087 3.913 19 H 0.099 0.901 20 O -0.555 6.555 21 C -0.150 4.150 22 H 0.401 0.599 23 H 0.408 0.592 24 H 0.429 0.571 25 H 0.152 0.848 26 H 0.377 0.623 27 H -0.228 1.228 28 H -0.235 1.235 29 H 0.176 0.824 30 H 0.158 0.842 31 H 0.100 0.900 32 H 0.102 0.898 33 H 0.384 0.616 34 H 0.111 0.889 35 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.272 -3.332 -2.854 4.941 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.399 5.399 2 C 0.318 3.682 3 O -0.401 6.401 4 C 0.033 3.967 5 N -0.854 5.854 6 S 2.799 3.201 7 O -0.931 6.931 8 O -0.940 6.940 9 C -0.765 4.765 10 C -0.223 4.223 11 C -0.178 4.178 12 O -0.329 6.329 13 Si 0.566 3.434 14 S 0.426 5.574 15 C -0.344 4.344 16 C -0.102 4.102 17 C -0.168 4.168 18 C 0.027 3.973 19 H 0.117 0.883 20 O -0.361 6.361 21 C -0.190 4.190 22 H 0.229 0.771 23 H 0.240 0.760 24 H 0.268 0.732 25 H 0.169 0.831 26 H 0.227 0.773 27 H -0.151 1.151 28 H -0.158 1.158 29 H 0.193 0.807 30 H 0.175 0.825 31 H 0.118 0.882 32 H 0.120 0.880 33 H 0.232 0.768 34 H 0.129 0.871 35 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges 3.554 -4.107 -1.661 5.680 hybrid contribution -1.557 1.279 -1.637 2.596 sum 1.997 -2.828 -3.298 4.781 Atomic orbital electron populations 1.43595 1.06809 1.13238 1.76252 1.19833 0.83145 0.89649 0.75579 1.90783 1.68146 1.32082 1.49039 1.21401 0.92670 0.86998 0.95617 1.55725 1.72857 1.31599 1.25198 1.01545 0.73008 0.73565 0.71987 1.93614 1.71551 1.50714 1.77251 1.93629 1.78766 1.38142 1.83507 1.29804 1.27546 0.99481 1.19626 1.25005 0.97655 0.98532 1.01111 1.24917 1.07055 0.95845 0.89953 1.86644 1.37413 1.87036 1.21779 0.94809 0.77228 0.80968 0.90359 1.84258 1.09908 1.06860 1.56359 1.25905 1.00565 0.98967 1.08983 1.19746 0.93705 0.98870 0.97881 1.23562 0.91085 1.05100 0.97066 1.23127 0.83984 0.95922 0.94302 0.88279 1.86510 1.45373 1.76042 1.28131 1.23971 0.98733 1.02829 0.93444 0.77073 0.76044 0.73203 0.83054 0.77292 1.15086 1.15844 0.80676 0.82476 0.88163 0.87960 0.76839 0.87081 0.89482 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 30. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.84 0.61 8.70 31.22 0.27 0.88 16 2 C 0.54 0.86 5.81 -10.98 -0.06 0.79 16 3 O -0.53 -2.72 16.24 5.56 0.09 -2.63 16 4 C 0.13 -0.13 1.31 -132.16 -0.17 -0.31 16 5 N -1.09 1.86 3.21 0.26 0.00 1.86 16 6 S 2.71 5.15 4.88 -107.50 -0.52 4.63 16 7 O -0.94 -4.12 16.50 -63.92 -1.05 -5.18 16 8 O -0.95 -4.35 15.71 -57.17 -0.90 -5.24 16 9 C -0.66 -0.75 3.73 -41.21 -0.15 -0.90 16 10 C -0.10 0.02 5.16 -36.00 -0.19 -0.17 16 11 C -0.07 0.08 2.16 36.01 0.08 0.16 16 12 O -0.52 0.95 8.14 -50.00 -0.41 0.54 16 13 Si 0.67 -1.53 31.02 -169.99 -5.27 -6.81 16 14 S 0.16 -0.19 20.80 -107.50 -2.24 -2.42 16 15 C -0.21 0.09 11.23 29.04 0.33 0.42 16 16 C -0.07 -0.08 9.52 -41.21 -0.39 -0.47 16 17 C -0.13 0.03 5.43 -25.92 -0.14 -0.11 16 18 C 0.09 -0.11 4.83 -25.92 -0.13 -0.23 16 19 H 0.10 -0.06 7.68 -51.93 -0.40 -0.46 16 20 O -0.55 0.62 13.67 -35.23 -0.48 0.14 16 21 C -0.15 0.49 7.22 -25.92 -0.19 0.30 16 22 H 0.40 -1.18 8.38 -40.82 -0.34 -1.52 16 23 H 0.41 -0.58 8.93 -40.82 -0.36 -0.94 16 24 H 0.43 -1.66 7.60 -34.47 -0.26 -1.92 16 25 H 0.15 -0.21 7.93 -51.93 -0.41 -0.62 16 26 H 0.38 -1.61 7.68 45.56 0.35 -1.26 16 27 H -0.23 0.01 7.11 56.52 0.40 0.41 16 28 H -0.24 0.13 7.11 56.52 0.40 0.53 16 29 H 0.18 -0.44 8.06 -52.49 -0.42 -0.86 16 30 H 0.16 0.17 7.74 -52.49 -0.41 -0.23 16 31 H 0.10 0.14 7.60 -51.93 -0.39 -0.25 16 32 H 0.10 -0.10 6.38 -51.93 -0.33 -0.43 16 33 H 0.38 -1.90 9.12 45.56 0.42 -1.49 16 34 H 0.11 -0.54 8.04 -51.93 -0.42 -0.96 16 35 H 0.09 -0.34 8.09 -51.93 -0.42 -0.76 16 LS Contribution 312.73 15.07 4.71 4.71 Total: 0.00 -11.39 312.73 -9.42 -20.81 By element: Atomic # 1 Polarization: -8.16 SS G_CDS: -2.60 Total: -10.76 kcal Atomic # 6 Polarization: 0.50 SS G_CDS: -1.02 Total: -0.52 kcal Atomic # 7 Polarization: 2.46 SS G_CDS: 0.27 Total: 2.74 kcal Atomic # 8 Polarization: -9.62 SS G_CDS: -2.75 Total: -12.38 kcal Atomic # 14 Polarization: -1.53 SS G_CDS: -5.27 Total: -6.81 kcal Atomic # 16 Polarization: 4.97 SS G_CDS: -2.76 Total: 2.21 kcal Total LS contribution 4.71 Total: 4.71 kcal Total: -11.39 -9.42 -20.81 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_40_14243766_14772022.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -81.867 kcal (2) G-P(sol) polarization free energy of solvation -11.387 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.254 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.423 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -20.810 kcal (6) G-S(sol) free energy of system = (1) + (5) -102.677 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.22 seconds