Wall clock time and date at job start Tue Mar 9 2021 14:17:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.34777 * 1 3 3 O 1.21279 * 119.99593 * 2 1 4 4 C 1.50701 * 119.99983 * 179.97438 * 2 1 3 5 5 N 1.46494 * 112.85062 * 322.31795 * 4 2 1 6 6 S 1.65601 * 119.99888 * 291.73674 * 5 4 2 7 7 O 1.42101 * 106.40253 * 180.65969 * 6 5 4 8 8 O 1.42103 * 106.40370 * 47.74335 * 6 5 4 9 9 C 1.76194 * 107.22174 * 294.20096 * 6 5 4 10 10 C 1.33391 * 122.53864 * 292.15283 * 9 6 5 11 11 C 1.50703 * 125.20388 * 0.02562 * 10 9 6 12 12 O 1.42904 * 109.46869 * 41.44679 * 11 10 9 13 13 Si 1.86291 * 109.47246 * 161.44975 * 11 10 9 14 14 S 1.75882 * 109.59554 * 179.74927 * 10 9 6 15 15 C 1.75885 * 90.97020 * 0.22727 * 14 10 9 16 16 C 1.33392 * 109.59399 * 0.02562 * 15 14 10 17 17 C 1.53780 * 113.61168 * 191.11619 * 4 2 1 18 18 C 1.53773 * 87.08196 * 270.80347 * 17 4 2 19 19 H 1.09002 * 113.61926 * 89.12171 * 18 17 4 20 20 O 1.42908 * 113.61535 * 220.02057 * 18 17 4 21 21 C 1.53783 * 87.08565 * 334.56805 * 18 17 4 22 22 H 0.97006 * 119.99897 * 184.40045 * 1 2 3 23 23 H 0.97000 * 120.00630 * 4.40642 * 1 2 3 24 24 H 0.97004 * 120.00244 * 111.74116 * 5 4 2 25 25 H 1.09001 * 109.47137 * 281.45147 * 11 10 9 26 26 H 0.96701 * 113.99528 * 67.02951 * 12 11 10 27 27 H 1.48504 * 110.00134 * 184.93835 * 13 11 10 28 28 H 1.48501 * 110.00342 * 306.25264 * 13 11 10 29 29 H 1.08002 * 125.20443 * 180.02562 * 15 14 10 30 30 H 1.08001 * 122.54111 * 180.02562 * 16 15 14 31 31 H 1.09000 * 113.61646 * 25.35693 * 17 4 2 32 32 H 1.09000 * 113.61283 * 156.16864 * 17 4 2 33 33 H 0.96695 * 114.00009 * 180.02562 * 20 18 17 34 34 H 1.08997 * 113.61427 * 270.88913 * 21 18 17 35 35 H 1.08993 * 113.61625 * 139.97819 * 21 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3478 0.0000 0.0000 3 8 1.9541 1.0503 0.0000 4 6 2.1013 -1.3051 0.0006 5 7 1.4605 -2.3316 0.8262 6 16 1.4174 -2.1618 2.4730 7 8 0.7526 -3.3118 2.9777 8 8 0.9772 -0.8350 2.7282 9 6 3.0794 -2.2543 3.0505 10 6 3.7982 -3.3765 2.9913 11 6 3.3119 -4.6915 2.4386 12 8 2.5569 -4.4577 1.2480 13 14 4.7731 -5.7777 2.0441 14 16 5.4028 -3.0847 3.6498 15 6 4.9930 -1.4073 3.9845 16 6 3.7370 -1.1691 3.6037 17 6 3.6066 -1.1471 0.2722 18 6 3.7839 -0.9865 -1.2468 19 1 3.6992 0.0447 -1.5898 20 8 4.9397 -1.6506 -1.7617 21 6 2.4864 -1.7968 -1.4047 22 1 -0.4850 -0.8376 0.0645 23 1 -0.4851 0.8375 -0.0645 24 1 1.0614 -3.1108 0.4084 25 1 2.6811 -5.1853 3.1777 26 1 3.0817 -4.1191 0.5097 27 1 4.3138 -7.0286 1.3886 28 1 5.7175 -5.0554 1.1544 29 1 5.6568 -0.6813 4.4302 30 1 3.2702 -0.2014 3.7139 31 1 3.8564 -0.2498 0.8383 32 1 4.0742 -2.0455 0.6751 33 1 5.0568 -1.5529 -2.7166 34 1 2.6481 -2.8732 -1.4616 35 1 1.8318 -1.4238 -2.1924 There are 55 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 55 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_40_14243766_14772022.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 14:17:22 Heat of formation + Delta-G solvation = -113.470794 kcal Electronic energy + Delta-G solvation = -27388.481275 eV Core-core repulsion = 23415.511865 eV Total energy + Delta-G solvation = -3972.969409 eV No. of doubly occupied orbitals = 55 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 335.042 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -42.03632 -39.79303 -38.98997 -38.46754 -37.58431 -37.01947 -36.58983 -34.81379 -33.29500 -31.85326 -27.63760 -27.03521 -26.31152 -24.37614 -22.97118 -21.83564 -20.61883 -20.19297 -19.40030 -19.11167 -18.70775 -18.43871 -18.08328 -17.66221 -17.14321 -16.94738 -16.51729 -16.16594 -16.10997 -15.45994 -15.34669 -15.12362 -14.78127 -14.52832 -14.10556 -14.06038 -13.85647 -13.62831 -13.55357 -13.30859 -13.18717 -13.11984 -12.82592 -12.66264 -12.42583 -12.27887 -11.85974 -11.58591 -11.54194 -11.18080 -10.99677 -10.74291 -10.53409 -10.11780 -9.72844 -5.10567 -0.78205 -0.50247 0.35137 0.62873 1.05235 1.11268 1.31411 1.56515 1.83662 1.91283 2.27116 2.61174 3.01964 3.10243 3.21544 3.23596 3.31562 3.43374 3.57685 3.71580 3.95860 4.12969 4.22970 4.38627 4.46340 4.51802 4.62775 4.70698 4.74416 4.78722 4.93505 5.08888 5.11330 5.77502 5.97444 6.21157 6.28259 6.81665 7.16238 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.828 5.828 2 C 0.529 3.471 3 O -0.569 6.569 4 C 0.130 3.870 5 N -1.072 6.072 6 S 2.722 3.278 7 O -0.969 6.969 8 O -0.984 6.984 9 C -0.676 4.676 10 C -0.105 4.105 11 C -0.079 4.079 12 O -0.527 6.527 13 Si 0.740 3.260 14 S 0.199 5.801 15 C -0.212 4.212 16 C -0.094 4.094 17 C -0.136 4.136 18 C 0.086 3.914 19 H 0.087 0.913 20 O -0.567 6.567 21 C -0.132 4.132 22 H 0.412 0.588 23 H 0.411 0.589 24 H 0.441 0.559 25 H 0.152 0.848 26 H 0.388 0.612 27 H -0.258 1.258 28 H -0.253 1.253 29 H 0.194 0.806 30 H 0.147 0.853 31 H 0.077 0.923 32 H 0.110 0.890 33 H 0.400 0.600 34 H 0.136 0.864 35 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.954 -4.735 -3.569 6.624 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.390 5.390 2 C 0.311 3.689 3 O -0.447 6.447 4 C 0.037 3.963 5 N -0.839 5.839 6 S 2.811 3.189 7 O -0.959 6.959 8 O -0.974 6.974 9 C -0.778 4.778 10 C -0.226 4.226 11 C -0.189 4.189 12 O -0.337 6.337 13 Si 0.638 3.362 14 S 0.464 5.536 15 C -0.347 4.347 16 C -0.122 4.122 17 C -0.175 4.175 18 C 0.026 3.974 19 H 0.105 0.895 20 O -0.376 6.376 21 C -0.171 4.171 22 H 0.242 0.758 23 H 0.243 0.757 24 H 0.283 0.717 25 H 0.170 0.830 26 H 0.240 0.760 27 H -0.182 1.182 28 H -0.178 1.178 29 H 0.211 0.789 30 H 0.164 0.836 31 H 0.096 0.904 32 H 0.128 0.872 33 H 0.250 0.750 34 H 0.154 0.846 35 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges 4.174 -5.527 -2.388 7.326 hybrid contribution -1.731 1.717 -1.429 2.826 sum 2.443 -3.810 -3.817 5.921 Atomic orbital electron populations 1.43596 1.06393 1.14091 1.74951 1.20299 0.83681 0.90070 0.74878 1.90757 1.69052 1.33733 1.51192 1.21291 0.91834 0.86049 0.97147 1.55342 1.72822 1.31918 1.23799 1.00890 0.73117 0.72312 0.72592 1.93572 1.72732 1.51340 1.78273 1.93586 1.79860 1.39606 1.84379 1.29588 1.27078 1.00196 1.20969 1.25241 0.98211 0.98529 1.00663 1.25189 1.07926 0.95486 0.90281 1.86612 1.37957 1.87088 1.22017 0.93912 0.75209 0.78091 0.89033 1.84113 1.08526 1.05753 1.55251 1.26203 1.00265 1.00103 1.08171 1.19746 0.94551 0.98681 0.99174 1.23597 0.91675 1.04432 0.97820 1.23006 0.85022 0.95851 0.93487 0.89470 1.86465 1.45390 1.75929 1.29776 1.23978 0.97272 1.03947 0.91896 0.75756 0.75740 0.71675 0.83028 0.76024 1.18219 1.17766 0.78913 0.83583 0.90436 0.87176 0.74967 0.84639 0.88101 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.83 0.57 8.70 -173.53 -1.51 -0.94 16 2 C 0.53 2.29 5.81 87.66 0.51 2.80 16 3 O -0.57 -7.10 16.24 -3.03 -0.05 -7.15 16 4 C 0.13 -0.24 1.31 3.39 0.00 -0.24 16 5 N -1.07 3.54 3.21 -153.09 -0.49 3.05 16 6 S 2.72 13.39 4.88 -56.49 -0.28 13.11 16 7 O -0.97 -9.37 16.50 -121.55 -2.01 -11.37 16 8 O -0.98 -10.96 15.71 -128.00 -2.01 -12.97 16 9 C -0.68 -2.10 3.73 21.22 0.08 -2.02 16 10 C -0.10 0.05 5.16 24.59 0.13 0.18 16 11 C -0.08 0.23 2.16 71.24 0.15 0.39 16 12 O -0.53 2.29 8.14 -134.86 -1.10 1.19 16 13 Si 0.74 -4.07 31.02 68.60 2.13 -1.95 16 14 S 0.20 -0.61 20.80 -56.49 -1.18 -1.78 16 15 C -0.21 0.14 11.23 66.72 0.75 0.89 16 16 C -0.09 -0.32 9.52 21.22 0.20 -0.11 16 17 C -0.14 -0.04 5.43 31.12 0.17 0.13 16 18 C 0.09 -0.21 4.83 31.12 0.15 -0.06 16 19 H 0.09 -0.01 7.68 -2.39 -0.02 -0.03 16 20 O -0.57 1.69 13.67 -148.98 -2.04 -0.35 16 21 C -0.13 1.01 7.22 31.12 0.22 1.23 16 22 H 0.41 -2.33 8.38 -92.70 -0.78 -3.11 16 23 H 0.41 -0.75 8.93 -92.71 -0.83 -1.58 16 24 H 0.44 -3.73 7.60 -96.74 -0.74 -4.47 16 25 H 0.15 -0.45 7.93 -2.39 -0.02 -0.47 16 26 H 0.39 -3.83 7.68 -74.06 -0.57 -4.40 16 27 H -0.26 0.14 7.11 99.48 0.71 0.84 16 28 H -0.25 0.60 7.11 99.48 0.71 1.31 16 29 H 0.19 -1.00 8.06 -2.91 -0.02 -1.03 16 30 H 0.15 0.72 7.74 -2.91 -0.02 0.69 16 31 H 0.08 0.40 7.60 -2.39 -0.02 0.38 16 32 H 0.11 -0.20 6.38 -2.39 -0.02 -0.22 16 33 H 0.40 -4.34 9.12 -74.06 -0.68 -5.01 16 34 H 0.14 -1.67 8.04 -2.39 -0.02 -1.69 16 35 H 0.10 -0.97 8.09 -2.39 -0.02 -0.99 16 Total: 0.00 -27.25 312.73 -8.48 -35.74 By element: Atomic # 1 Polarization: -17.44 SS G_CDS: -2.33 Total: -19.76 kcal Atomic # 6 Polarization: 0.82 SS G_CDS: 2.37 Total: 3.19 kcal Atomic # 7 Polarization: 4.11 SS G_CDS: -2.00 Total: 2.11 kcal Atomic # 8 Polarization: -23.45 SS G_CDS: -7.20 Total: -30.65 kcal Atomic # 14 Polarization: -4.07 SS G_CDS: 2.13 Total: -1.95 kcal Atomic # 16 Polarization: 12.78 SS G_CDS: -1.45 Total: 11.33 kcal Total: -27.25 -8.48 -35.74 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_40_14243766_14772022.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -77.735 kcal (2) G-P(sol) polarization free energy of solvation -27.255 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -104.990 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.481 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.736 kcal (6) G-S(sol) free energy of system = (1) + (5) -113.471 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds