Wall clock time and date at job start Tue Mar 9 2021 14:17:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.34775 * 1 3 3 O 1.21285 * 120.00359 * 2 1 4 4 C 1.50702 * 120.00288 * 179.97438 * 2 1 3 5 5 N 1.46503 * 112.84753 * 38.41173 * 4 2 1 6 6 S 1.65596 * 119.99933 * 61.59152 * 5 4 2 7 7 O 1.42094 * 106.40374 * 313.77822 * 6 5 4 8 8 O 1.42104 * 106.40034 * 180.85983 * 6 5 4 9 9 C 1.76199 * 107.21887 * 67.32016 * 6 5 4 10 10 C 1.33391 * 122.53809 * 80.98695 * 9 6 5 11 11 S 1.75885 * 109.59439 * 180.02562 * 10 9 6 12 12 C 1.75890 * 90.96925 * 0.02562 * 11 10 9 13 13 C 1.50701 * 125.20227 * 180.02562 * 12 11 10 14 14 O 1.42898 * 109.47173 * 119.96085 * 13 12 11 15 15 Si 1.86299 * 109.47246 * 359.95797 * 13 12 11 16 16 C 1.33388 * 109.59358 * 359.97438 * 12 11 10 17 17 C 1.53786 * 113.69055 * 267.14745 * 4 2 1 18 18 C 1.53783 * 87.07991 * 220.00286 * 17 4 2 19 19 H 1.08999 * 113.68927 * 139.98671 * 18 17 4 20 20 O 1.42896 * 113.61713 * 270.88440 * 18 17 4 21 21 C 1.53780 * 113.61865 * 169.60979 * 4 2 1 22 22 H 0.96997 * 119.99588 * 184.80948 * 1 2 3 23 23 H 0.97002 * 119.99645 * 4.80681 * 1 2 3 24 24 H 0.97002 * 119.99945 * 241.59096 * 5 4 2 25 25 H 1.08001 * 125.20689 * 359.75763 * 10 9 6 26 26 H 1.09000 * 109.46930 * 239.95627 * 13 12 11 27 27 H 0.96702 * 114.00016 * 299.99620 * 14 13 12 28 28 H 1.48500 * 109.99880 * 58.68179 * 15 13 12 29 29 H 1.48501 * 109.99891 * 180.02562 * 15 13 12 30 30 H 1.07998 * 122.54157 * 180.02562 * 16 12 11 31 31 H 1.08998 * 113.61093 * 334.55273 * 17 4 2 32 32 H 1.09001 * 113.61458 * 105.45588 * 17 4 2 33 33 H 0.96700 * 114.00075 * 277.49835 * 20 18 17 34 34 H 1.08999 * 113.61204 * 254.61212 * 21 4 2 35 35 H 1.08995 * 113.61217 * 25.51484 * 21 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3478 0.0000 0.0000 3 8 1.9542 1.0503 0.0000 4 6 2.1013 -1.3051 0.0006 5 7 1.4696 -2.3271 -0.8378 6 16 1.2972 -2.0725 -2.4649 7 8 0.7893 -0.7538 -2.6132 8 8 0.6405 -3.2212 -2.9833 9 6 2.9137 -2.0649 -3.1659 10 6 3.5751 -3.1863 -3.4563 11 16 5.1470 -2.7849 -4.1358 12 6 4.8078 -1.0659 -3.9820 13 6 5.7447 0.0438 -4.3842 14 8 5.1224 0.8539 -5.3835 15 14 7.3162 -0.6872 -5.0674 16 6 3.5940 -0.8948 -3.4560 17 6 2.4710 -1.8045 1.4073 18 6 3.8244 -2.2310 0.8146 19 1 4.6716 -2.0349 1.4718 20 8 3.8259 -3.5596 0.2886 21 6 3.6096 -1.1457 -0.2536 22 1 -0.4849 -0.8371 0.0704 23 1 -0.4850 0.8371 -0.0704 24 1 1.1524 -3.1528 -0.4397 25 1 3.2041 -4.1876 -3.2946 26 1 5.9775 0.6563 -3.5132 27 1 4.8870 0.3733 -6.1889 28 1 7.0088 -1.5500 -6.2362 29 1 8.2488 0.3971 -5.4671 30 1 3.1737 0.0826 -3.2706 31 1 2.5498 -1.0076 2.1468 32 1 1.8606 -2.6408 1.7481 33 1 3.9606 -4.2466 0.9557 34 1 3.9184 -1.4503 -1.2536 35 1 3.9996 -0.1688 0.0318 There are 55 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 55 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_40_14243766_15065232.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 14:17:26 Heat of formation + Delta-G solvation = -108.109585 kcal Electronic energy + Delta-G solvation = -26547.735679 eV Core-core repulsion = 22574.998749 eV Total energy + Delta-G solvation = -3972.736930 eV No. of doubly occupied orbitals = 55 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 335.042 amu Computer time = 1.16 seconds Orbital eigenvalues (eV) -41.89519 -39.56986 -39.17173 -38.22705 -37.63580 -36.89566 -36.37815 -34.63860 -33.27523 -31.81437 -27.42120 -27.05101 -26.74692 -24.86686 -22.38458 -21.47848 -21.04129 -20.01162 -19.28172 -18.91807 -18.67956 -18.22817 -17.97719 -17.77624 -17.47750 -16.90274 -16.41488 -16.09070 -15.88180 -15.51820 -15.25195 -15.16376 -14.88704 -14.40886 -14.18370 -14.07110 -13.93332 -13.78845 -13.18000 -13.11748 -13.06315 -12.92527 -12.88265 -12.71751 -12.42942 -12.29734 -11.82249 -11.67013 -11.41013 -11.29358 -10.81282 -10.53488 -10.32610 -10.17615 -9.77192 -5.16126 -0.78243 -0.43364 0.33761 0.60200 0.97914 1.18636 1.46344 1.49959 1.83214 1.94446 2.44261 2.67938 2.85161 3.08951 3.17107 3.22889 3.35483 3.46567 3.60221 3.77695 3.85501 3.91674 4.24621 4.36955 4.44090 4.44644 4.50273 4.66007 4.68364 4.75492 4.94189 4.96986 5.11574 5.71437 5.88521 6.27690 6.38234 6.46710 7.29979 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.837 5.837 2 C 0.528 3.472 3 O -0.529 6.529 4 C 0.131 3.869 5 N -1.083 6.083 6 S 2.705 3.295 7 O -0.939 6.939 8 O -0.952 6.952 9 C -0.688 4.688 10 C -0.072 4.072 11 S 0.160 5.840 12 C -0.228 4.228 13 C -0.033 4.033 14 O -0.520 6.520 15 Si 0.651 3.349 16 C -0.041 4.041 17 C -0.151 4.151 18 C 0.088 3.912 19 H 0.082 0.918 20 O -0.545 6.545 21 C -0.141 4.141 22 H 0.399 0.601 23 H 0.406 0.594 24 H 0.425 0.575 25 H 0.183 0.817 26 H 0.130 0.870 27 H 0.378 0.622 28 H -0.240 1.240 29 H -0.233 1.233 30 H 0.159 0.841 31 H 0.110 0.890 32 H 0.092 0.908 33 H 0.384 0.616 34 H 0.098 0.902 35 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.681 -5.583 5.620 8.364 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.399 5.399 2 C 0.309 3.691 3 O -0.404 6.404 4 C 0.038 3.962 5 N -0.843 5.843 6 S 2.792 3.208 7 O -0.929 6.929 8 O -0.942 6.942 9 C -0.788 4.788 10 C -0.211 4.211 11 S 0.423 5.577 12 C -0.346 4.346 13 C -0.145 4.145 14 O -0.327 6.327 15 Si 0.550 3.450 16 C -0.070 4.070 17 C -0.190 4.190 18 C 0.029 3.971 19 H 0.100 0.900 20 O -0.351 6.351 21 C -0.179 4.179 22 H 0.226 0.774 23 H 0.238 0.762 24 H 0.262 0.738 25 H 0.200 0.800 26 H 0.148 0.852 27 H 0.226 0.774 28 H -0.164 1.164 29 H -0.156 1.156 30 H 0.176 0.824 31 H 0.128 0.872 32 H 0.111 0.889 33 H 0.232 0.768 34 H 0.116 0.884 35 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges 4.297 -4.830 3.717 7.457 hybrid contribution -1.935 0.074 0.405 1.978 sum 2.362 -4.756 4.122 6.723 Atomic orbital electron populations 1.43647 1.06999 1.13119 1.76151 1.20258 0.83107 0.90250 0.75452 1.90769 1.68153 1.32247 1.49278 1.21291 0.93268 0.86094 0.95534 1.55283 1.75356 1.28077 1.25626 1.01763 0.73227 0.73901 0.71943 1.93645 1.76456 1.38099 1.84658 1.93635 1.72117 1.51169 1.77316 1.29898 1.27738 0.98441 1.22703 1.25814 0.96862 1.01826 0.96591 1.84358 1.15061 0.99792 1.58450 1.24985 1.01132 0.97516 1.10969 1.24418 1.01215 0.93169 0.95741 1.86656 1.80008 1.37597 1.28417 0.95370 0.78440 0.84041 0.87175 1.19628 0.92791 0.98231 0.96385 1.23891 0.98977 1.02648 0.93524 1.22569 0.95770 0.83550 0.95248 0.90040 1.86474 1.95443 1.14779 1.38365 1.23754 0.91770 1.00151 1.02255 0.77354 0.76210 0.73820 0.79983 0.85232 0.77419 1.16442 1.15604 0.82401 0.87190 0.88938 0.76845 0.88414 0.85632 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 29. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.84 0.33 8.13 31.22 0.25 0.58 16 2 C 0.53 0.93 5.78 -10.99 -0.06 0.86 16 3 O -0.53 -2.92 16.73 5.55 0.09 -2.83 16 4 C 0.13 -0.16 1.20 -132.15 -0.16 -0.32 16 5 N -1.08 2.07 4.73 0.27 0.00 2.07 16 6 S 2.70 3.98 5.78 -107.50 -0.62 3.36 16 7 O -0.94 -3.94 15.03 -57.17 -0.86 -4.80 16 8 O -0.95 -3.69 17.79 -57.17 -1.02 -4.71 16 9 C -0.69 -0.74 3.99 -41.21 -0.16 -0.90 16 10 C -0.07 0.02 10.78 29.04 0.31 0.33 16 11 S 0.16 -0.13 20.58 -107.50 -2.21 -2.34 16 12 C -0.23 -0.09 5.72 -36.00 -0.21 -0.30 16 13 C -0.03 0.00 2.96 36.01 0.11 0.11 16 14 O -0.52 -0.84 12.86 -35.23 -0.45 -1.30 16 15 Si 0.65 -0.62 30.97 -169.99 -5.26 -5.88 16 16 C -0.04 -0.07 7.98 -41.21 -0.33 -0.39 16 17 C -0.15 0.58 7.18 -25.92 -0.19 0.39 16 18 C 0.09 -0.32 5.28 -25.92 -0.14 -0.45 16 19 H 0.08 -0.38 8.14 -51.93 -0.42 -0.81 16 20 O -0.55 2.15 13.09 -35.23 -0.46 1.69 16 21 C -0.14 0.15 6.91 -25.92 -0.18 -0.03 16 22 H 0.40 -1.19 8.54 -40.82 -0.35 -1.54 16 23 H 0.41 -0.26 8.93 -40.82 -0.36 -0.63 16 24 H 0.43 -1.83 8.77 -34.47 -0.30 -2.13 16 25 H 0.18 -0.39 8.06 -52.49 -0.42 -0.81 16 26 H 0.13 -0.12 7.96 -51.93 -0.41 -0.54 16 27 H 0.38 -0.46 8.70 45.56 0.40 -0.07 16 28 H -0.24 -0.19 7.11 56.52 0.40 0.22 16 29 H -0.23 -0.42 7.11 56.52 0.40 -0.01 16 30 H 0.16 0.42 7.83 -52.49 -0.41 0.01 16 31 H 0.11 -0.42 8.10 -51.93 -0.42 -0.84 16 32 H 0.09 -0.51 8.09 -51.93 -0.42 -0.93 16 33 H 0.38 -2.90 9.12 45.56 0.42 -2.48 16 34 H 0.10 -0.05 4.08 -51.93 -0.21 -0.27 16 35 H 0.13 -0.07 7.35 -51.93 -0.38 -0.45 16 LS Contribution 321.34 15.07 4.84 4.84 Total: 0.00 -12.08 321.34 -9.21 -21.29 By element: Atomic # 1 Polarization: -8.77 SS G_CDS: -2.50 Total: -11.28 kcal Atomic # 6 Polarization: 0.30 SS G_CDS: -1.00 Total: -0.70 kcal Atomic # 7 Polarization: 2.40 SS G_CDS: 0.25 Total: 2.66 kcal Atomic # 8 Polarization: -9.24 SS G_CDS: -2.70 Total: -11.94 kcal Atomic # 14 Polarization: -0.62 SS G_CDS: -5.26 Total: -5.88 kcal Atomic # 16 Polarization: 3.85 SS G_CDS: -2.83 Total: 1.02 kcal Total LS contribution 4.84 Total: 4.84 kcal Total: -12.08 -9.21 -21.29 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_40_14243766_15065232.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -86.823 kcal (2) G-P(sol) polarization free energy of solvation -12.080 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -98.904 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.206 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -21.286 kcal (6) G-S(sol) free energy of system = (1) + (5) -108.110 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.16 seconds