Wall clock time and date at job start Tue Mar 9 2021 14:17:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.34775 * 1 3 3 O 1.21285 * 120.00359 * 2 1 4 4 C 1.50702 * 120.00288 * 179.97438 * 2 1 3 5 5 N 1.46503 * 112.84753 * 38.41173 * 4 2 1 6 6 S 1.65596 * 119.99933 * 61.59152 * 5 4 2 7 7 O 1.42094 * 106.40374 * 313.77822 * 6 5 4 8 8 O 1.42104 * 106.40034 * 180.85983 * 6 5 4 9 9 C 1.76199 * 107.21887 * 67.32016 * 6 5 4 10 10 C 1.33391 * 122.53809 * 80.98695 * 9 6 5 11 11 S 1.75885 * 109.59439 * 180.02562 * 10 9 6 12 12 C 1.75890 * 90.96925 * 0.02562 * 11 10 9 13 13 C 1.50701 * 125.20227 * 180.02562 * 12 11 10 14 14 O 1.42898 * 109.47173 * 119.96085 * 13 12 11 15 15 Si 1.86299 * 109.47246 * 359.95797 * 13 12 11 16 16 C 1.33388 * 109.59358 * 359.97438 * 12 11 10 17 17 C 1.53786 * 113.69055 * 267.14745 * 4 2 1 18 18 C 1.53783 * 87.07991 * 220.00286 * 17 4 2 19 19 H 1.08999 * 113.68927 * 139.98671 * 18 17 4 20 20 O 1.42896 * 113.61713 * 270.88440 * 18 17 4 21 21 C 1.53780 * 113.61865 * 169.60979 * 4 2 1 22 22 H 0.96997 * 119.99588 * 184.80948 * 1 2 3 23 23 H 0.97002 * 119.99645 * 4.80681 * 1 2 3 24 24 H 0.97002 * 119.99945 * 241.59096 * 5 4 2 25 25 H 1.08001 * 125.20689 * 359.75763 * 10 9 6 26 26 H 1.09000 * 109.46930 * 239.95627 * 13 12 11 27 27 H 0.96702 * 114.00016 * 299.99620 * 14 13 12 28 28 H 1.48500 * 109.99880 * 58.68179 * 15 13 12 29 29 H 1.48501 * 109.99891 * 180.02562 * 15 13 12 30 30 H 1.07998 * 122.54157 * 180.02562 * 16 12 11 31 31 H 1.08998 * 113.61093 * 334.55273 * 17 4 2 32 32 H 1.09001 * 113.61458 * 105.45588 * 17 4 2 33 33 H 0.96700 * 114.00075 * 277.49835 * 20 18 17 34 34 H 1.08999 * 113.61204 * 254.61212 * 21 4 2 35 35 H 1.08995 * 113.61217 * 25.51484 * 21 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3478 0.0000 0.0000 3 8 1.9542 1.0503 0.0000 4 6 2.1013 -1.3051 0.0006 5 7 1.4696 -2.3271 -0.8378 6 16 1.2972 -2.0725 -2.4649 7 8 0.7893 -0.7538 -2.6132 8 8 0.6405 -3.2212 -2.9833 9 6 2.9137 -2.0649 -3.1659 10 6 3.5751 -3.1863 -3.4563 11 16 5.1470 -2.7849 -4.1358 12 6 4.8078 -1.0659 -3.9820 13 6 5.7447 0.0438 -4.3842 14 8 5.1224 0.8539 -5.3835 15 14 7.3162 -0.6872 -5.0674 16 6 3.5940 -0.8948 -3.4560 17 6 2.4710 -1.8045 1.4073 18 6 3.8244 -2.2310 0.8146 19 1 4.6716 -2.0349 1.4718 20 8 3.8259 -3.5596 0.2886 21 6 3.6096 -1.1457 -0.2536 22 1 -0.4849 -0.8371 0.0704 23 1 -0.4850 0.8371 -0.0704 24 1 1.1524 -3.1528 -0.4397 25 1 3.2041 -4.1876 -3.2946 26 1 5.9775 0.6563 -3.5132 27 1 4.8870 0.3733 -6.1889 28 1 7.0088 -1.5500 -6.2362 29 1 8.2488 0.3971 -5.4671 30 1 3.1737 0.0826 -3.2706 31 1 2.5498 -1.0076 2.1468 32 1 1.8606 -2.6408 1.7481 33 1 3.9606 -4.2466 0.9557 34 1 3.9184 -1.4503 -1.2536 35 1 3.9996 -0.1688 0.0318 There are 55 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 55 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_40_14243766_15065232.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 14:17:25 Heat of formation + Delta-G solvation = -121.171739 kcal Electronic energy + Delta-G solvation = -26548.302097 eV Core-core repulsion = 22574.998749 eV Total energy + Delta-G solvation = -3973.303347 eV No. of doubly occupied orbitals = 55 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 335.042 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -41.81712 -39.61747 -39.15916 -38.44031 -37.70027 -37.11637 -36.17578 -34.66722 -33.18459 -31.84953 -27.35534 -26.93505 -26.65638 -24.89723 -22.31655 -21.51358 -20.96903 -20.04352 -19.29245 -18.89936 -18.73286 -18.05779 -17.96078 -17.83498 -17.51878 -16.82265 -16.44785 -16.17565 -15.81163 -15.58234 -15.33559 -15.07024 -14.89283 -14.38266 -14.21867 -14.05404 -13.88521 -13.73346 -13.41112 -13.28388 -13.04770 -13.00886 -12.81618 -12.54564 -12.50863 -12.33484 -11.79917 -11.63533 -11.32158 -11.04463 -10.84007 -10.63482 -10.27790 -10.18565 -9.75922 -5.12132 -0.86095 -0.45076 0.34530 0.58251 0.92275 1.18362 1.42010 1.49320 1.83484 1.91389 2.43336 2.64125 3.09623 3.13173 3.25287 3.32138 3.49829 3.58514 3.73051 3.81903 3.90164 4.09305 4.24894 4.45439 4.58673 4.65075 4.70608 4.81724 4.89311 4.91980 4.92918 5.02873 5.17801 5.84606 5.95777 6.33656 6.39127 7.02615 7.25794 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.830 5.830 2 C 0.519 3.481 3 O -0.577 6.577 4 C 0.129 3.871 5 N -1.065 6.065 6 S 2.718 3.282 7 O -0.973 6.973 8 O -0.977 6.977 9 C -0.698 4.698 10 C -0.073 4.073 11 S 0.201 5.799 12 C -0.233 4.233 13 C -0.047 4.047 14 O -0.542 6.542 15 Si 0.731 3.269 16 C -0.054 4.054 17 C -0.139 4.139 18 C 0.101 3.899 19 H 0.097 0.903 20 O -0.555 6.555 21 C -0.155 4.155 22 H 0.411 0.589 23 H 0.406 0.594 24 H 0.439 0.561 25 H 0.203 0.797 26 H 0.134 0.866 27 H 0.388 0.612 28 H -0.258 1.258 29 H -0.272 1.272 30 H 0.137 0.863 31 H 0.111 0.889 32 H 0.116 0.884 33 H 0.401 0.599 34 H 0.091 0.909 35 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.338 -7.701 6.514 10.624 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.392 5.392 2 C 0.302 3.698 3 O -0.455 6.455 4 C 0.036 3.964 5 N -0.828 5.828 6 S 2.806 3.194 7 O -0.963 6.963 8 O -0.968 6.968 9 C -0.799 4.799 10 C -0.212 4.212 11 S 0.464 5.536 12 C -0.351 4.351 13 C -0.158 4.158 14 O -0.351 6.351 15 Si 0.632 3.368 16 C -0.083 4.083 17 C -0.178 4.178 18 C 0.042 3.958 19 H 0.115 0.885 20 O -0.363 6.363 21 C -0.194 4.194 22 H 0.241 0.759 23 H 0.237 0.763 24 H 0.279 0.721 25 H 0.220 0.780 26 H 0.152 0.848 27 H 0.237 0.763 28 H -0.183 1.183 29 H -0.197 1.197 30 H 0.155 0.845 31 H 0.129 0.871 32 H 0.135 0.865 33 H 0.252 0.748 34 H 0.109 0.891 35 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges 4.888 -7.006 4.639 9.721 hybrid contribution -2.124 0.753 0.099 2.256 sum 2.765 -6.253 4.737 8.318 Atomic orbital electron populations 1.43669 1.06727 1.13882 1.74938 1.20845 0.83554 0.90872 0.74554 1.90737 1.69106 1.34089 1.51589 1.21342 0.92670 0.84934 0.97502 1.54873 1.75221 1.28528 1.24197 1.01060 0.73160 0.72647 0.72504 1.93604 1.77576 1.39658 1.85470 1.93594 1.73142 1.51720 1.78311 1.29704 1.27508 0.98749 1.23927 1.26138 0.97069 1.02336 0.95644 1.84190 1.14118 0.97851 1.57407 1.25077 1.00776 0.98788 1.10437 1.24744 1.01804 0.93340 0.95922 1.86622 1.80435 1.38760 1.29265 0.94485 0.75408 0.81594 0.85295 1.19506 0.93554 0.97706 0.97557 1.23918 0.99029 1.03250 0.91626 1.22426 0.96352 0.83191 0.93874 0.88491 1.86431 1.95460 1.14906 1.39525 1.23811 0.91772 1.00848 1.02947 0.75875 0.76264 0.72140 0.77957 0.84811 0.76289 1.18303 1.19740 0.84483 0.87052 0.86524 0.74770 0.89054 0.86891 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.83 -0.30 8.13 -173.53 -1.41 -1.71 16 2 C 0.52 2.57 5.78 87.66 0.51 3.07 16 3 O -0.58 -7.81 16.73 -3.04 -0.05 -7.86 16 4 C 0.13 -0.27 1.20 3.38 0.00 -0.27 16 5 N -1.06 4.19 4.73 -153.07 -0.72 3.46 16 6 S 2.72 10.46 5.78 -56.49 -0.33 10.13 16 7 O -0.97 -10.15 15.03 -128.00 -1.92 -12.07 16 8 O -0.98 -7.97 17.79 -128.00 -2.28 -10.25 16 9 C -0.70 -1.95 3.99 21.22 0.08 -1.86 16 10 C -0.07 0.08 10.78 66.72 0.72 0.80 16 11 S 0.20 -0.51 20.58 -56.49 -1.16 -1.67 16 12 C -0.23 -0.32 5.72 24.59 0.14 -0.18 16 13 C -0.05 -0.04 2.96 71.24 0.21 0.17 16 14 O -0.54 -2.49 12.86 -148.98 -1.92 -4.41 16 15 Si 0.73 -1.41 30.97 68.60 2.12 0.72 16 16 C -0.05 -0.25 7.98 21.22 0.17 -0.09 16 17 C -0.14 1.23 7.18 31.12 0.22 1.46 16 18 C 0.10 -0.86 5.28 31.12 0.16 -0.69 16 19 H 0.10 -1.09 8.14 -2.39 -0.02 -1.11 16 20 O -0.55 5.54 13.09 -148.98 -1.95 3.59 16 21 C -0.15 0.24 6.91 31.12 0.22 0.46 16 22 H 0.41 -2.26 8.54 -92.71 -0.79 -3.06 16 23 H 0.41 0.12 8.93 -92.71 -0.83 -0.71 16 24 H 0.44 -4.25 8.77 -96.75 -0.85 -5.10 16 25 H 0.20 -1.18 8.06 -2.91 -0.02 -1.20 16 26 H 0.13 -0.09 7.96 -2.39 -0.02 -0.11 16 27 H 0.39 -0.50 8.70 -74.06 -0.64 -1.15 16 28 H -0.26 -0.24 7.11 99.48 0.71 0.46 16 29 H -0.27 -1.22 7.11 99.48 0.71 -0.51 16 30 H 0.14 1.18 7.83 -2.91 -0.02 1.15 16 31 H 0.11 -0.95 8.10 -2.39 -0.02 -0.97 16 32 H 0.12 -1.59 8.09 -2.39 -0.02 -1.61 16 33 H 0.40 -7.14 9.12 -74.06 -0.68 -7.81 16 34 H 0.09 -0.03 4.08 -2.39 -0.01 -0.04 16 35 H 0.11 0.09 7.35 -2.39 -0.02 0.08 16 Total: 0.00 -29.19 321.34 -9.70 -38.90 By element: Atomic # 1 Polarization: -19.16 SS G_CDS: -2.52 Total: -21.68 kcal Atomic # 6 Polarization: 0.43 SS G_CDS: 2.44 Total: 2.87 kcal Atomic # 7 Polarization: 3.89 SS G_CDS: -2.13 Total: 1.75 kcal Atomic # 8 Polarization: -22.89 SS G_CDS: -8.12 Total: -31.01 kcal Atomic # 14 Polarization: -1.41 SS G_CDS: 2.12 Total: 0.72 kcal Atomic # 16 Polarization: 9.95 SS G_CDS: -1.49 Total: 8.46 kcal Total: -29.19 -9.70 -38.90 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_40_14243766_15065232.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -82.276 kcal (2) G-P(sol) polarization free energy of solvation -29.195 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -111.470 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.701 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.896 kcal (6) G-S(sol) free energy of system = (1) + (5) -121.172 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds