Wall clock time and date at job start Tue Mar 9 2021 14:17:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45198 * 1 3 3 C 1.34224 * 117.00353 * 2 1 4 4 O 1.20824 * 119.99849 * 5.22513 * 3 2 1 5 5 C 1.50705 * 120.00209 * 185.22473 * 3 2 1 6 6 N 1.46500 * 112.84692 * 35.95064 * 5 3 2 7 7 S 1.65592 * 120.00058 * 288.82554 * 6 5 3 8 8 O 1.42100 * 106.40444 * 185.34018 * 7 6 5 9 9 O 1.42099 * 106.40177 * 52.41772 * 7 6 5 10 10 C 1.76198 * 107.22258 * 298.87928 * 7 6 5 11 11 C 1.33390 * 122.54255 * 98.45089 * 10 7 6 12 12 S 1.75883 * 109.59768 * 180.02562 * 11 10 7 13 13 C 1.75885 * 90.96789 * 359.97438 * 12 11 10 14 14 C 1.50704 * 125.20146 * 179.97438 * 13 12 11 15 15 O 1.42910 * 109.46957 * 114.78496 * 14 13 12 16 16 Si 1.86293 * 109.47336 * 354.78216 * 14 13 12 17 17 C 1.33388 * 109.59759 * 0.23205 * 13 12 11 18 18 C 1.53782 * 113.69028 * 264.68252 * 5 3 2 19 19 C 1.53776 * 87.07985 * 220.00854 * 18 5 3 20 20 H 1.09007 * 113.61520 * 139.97901 * 19 18 5 21 21 O 1.42897 * 113.69202 * 270.87364 * 19 18 5 22 22 C 1.42902 * 113.99891 * 247.53955 * 21 19 18 23 23 C 1.53780 * 87.08537 * 25.43488 * 19 18 5 24 24 H 1.09005 * 109.46878 * 304.69596 * 1 2 3 25 25 H 1.08998 * 109.46905 * 64.69477 * 1 2 3 26 26 H 1.08998 * 109.46918 * 184.69986 * 1 2 3 27 27 H 0.97003 * 119.99935 * 108.83341 * 6 5 3 28 28 H 1.07998 * 125.19821 * 359.97438 * 11 10 7 29 29 H 1.08998 * 109.46992 * 234.77659 * 14 13 12 30 30 H 0.96700 * 113.99391 * 299.99704 * 15 14 13 31 31 H 1.48508 * 109.99869 * 58.67880 * 16 14 13 32 32 H 1.48502 * 110.00310 * 179.97438 * 16 14 13 33 33 H 1.08003 * 122.54310 * 179.75051 * 17 13 12 34 34 H 1.09002 * 113.61617 * 334.55586 * 18 5 3 35 35 H 1.09000 * 113.61601 * 105.45737 * 18 5 3 36 36 H 1.09000 * 109.46972 * 299.99365 * 22 21 19 37 37 H 1.08997 * 109.47423 * 59.99565 * 22 21 19 38 38 H 1.09001 * 109.47307 * 179.97438 * 22 21 19 39 39 H 1.08996 * 113.61207 * 220.02476 * 23 19 18 40 40 H 1.08998 * 113.61708 * 89.11246 * 23 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1959 0.0000 4 8 1.4073 2.2073 0.0953 5 6 3.5616 1.2772 -0.1188 6 7 4.1186 0.2503 -1.0028 7 16 4.1371 -1.3343 -0.5224 8 8 4.8431 -2.0499 -1.5268 9 8 2.8080 -1.6507 -0.1317 10 6 5.1198 -1.4256 0.9372 11 6 4.5877 -1.4480 2.1602 12 16 5.8704 -1.5412 3.3600 13 6 7.0933 -1.5454 2.0958 14 6 8.5811 -1.6121 2.3265 15 8 9.0904 -2.8387 1.7990 16 14 8.9304 -1.5296 4.1546 17 6 6.5028 -1.4748 0.9018 18 6 4.2838 1.3828 1.2347 19 6 5.2263 2.3959 0.5638 20 1 5.4853 3.2405 1.2023 21 8 6.3671 1.7969 -0.0541 22 6 7.6064 2.1136 0.5830 23 6 4.0800 2.6940 -0.4170 24 1 -0.3633 0.5850 0.8450 25 1 -0.3633 0.4393 -0.9291 26 1 -0.3633 -1.0242 0.0842 27 1 4.4768 0.4986 -1.8694 28 1 3.5309 -1.4134 2.3800 29 1 9.0643 -0.7730 1.8260 30 1 8.7038 -3.6295 2.1994 31 1 8.2506 -2.6504 4.8526 32 1 10.3943 -1.5951 4.3955 33 1 7.0612 -1.4595 -0.0225 34 1 3.6696 1.8147 2.0249 35 1 4.7790 0.4605 1.5385 36 1 7.7596 3.1927 0.5636 37 1 7.5822 1.7686 1.6167 38 1 8.4228 1.6209 0.0549 39 1 4.4107 2.8302 -1.4466 40 1 3.4100 3.4843 -0.0784 There are 61 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 61 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_40_14247464_15065232.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 14:17:48 Heat of formation + Delta-G solvation = -130.046539 kcal Electronic energy + Delta-G solvation = -31362.191107 eV Core-core repulsion = 26979.709020 eV Total energy + Delta-G solvation = -4382.482088 eV No. of doubly occupied orbitals = 61 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 364.062 amu Computer time = 1.54 seconds Orbital eigenvalues (eV) -42.18247 -40.34960 -39.55691 -38.11273 -37.76951 -37.60826 -37.05667 -36.70805 -33.62094 -31.98439 -29.12119 -27.86756 -27.44843 -27.02832 -26.23010 -24.91826 -22.58178 -21.47366 -21.05477 -19.94483 -19.37610 -18.92373 -18.64996 -17.98622 -17.84678 -17.63520 -17.40314 -17.34411 -16.88745 -16.47777 -16.16074 -15.97495 -15.61125 -15.37544 -15.00757 -14.88915 -14.52732 -14.31572 -14.25341 -13.88138 -13.84513 -13.53588 -13.38894 -13.09432 -13.01137 -12.89065 -12.80585 -12.73683 -12.56739 -12.52201 -12.32940 -12.10453 -11.92541 -11.85215 -11.58199 -11.51480 -10.88954 -10.77097 -10.51591 -10.13962 -9.87631 -5.24119 -0.73880 -0.51507 0.26800 0.53155 0.94828 1.08978 1.12066 1.39589 1.74976 1.76622 1.91723 2.44734 2.76453 2.92770 3.12160 3.14153 3.34845 3.37810 3.60938 3.78315 3.80668 3.92150 4.09800 4.22307 4.28659 4.31583 4.34663 4.35434 4.40104 4.42129 4.48843 4.58719 4.63396 4.69769 4.72660 4.78466 4.85498 4.88611 5.03659 5.51762 5.77819 6.04963 6.19605 6.78598 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.306 6.306 3 C 0.448 3.552 4 O -0.501 6.501 5 C 0.164 3.836 6 N -1.078 6.078 7 S 2.700 3.300 8 O -0.950 6.950 9 O -0.915 6.915 10 C -0.681 4.681 11 C -0.088 4.088 12 S 0.155 5.845 13 C -0.231 4.231 14 C -0.030 4.030 15 O -0.521 6.521 16 Si 0.646 3.354 17 C -0.026 4.026 18 C -0.191 4.191 19 C 0.075 3.925 20 H 0.091 0.909 21 O -0.359 6.359 22 C 0.026 3.974 23 C -0.115 4.115 24 H 0.061 0.939 25 H 0.059 0.941 26 H 0.104 0.896 27 H 0.428 0.572 28 H 0.188 0.812 29 H 0.128 0.872 30 H 0.379 0.621 31 H -0.239 1.239 32 H -0.233 1.233 33 H 0.155 0.845 34 H 0.114 0.886 35 H 0.109 0.891 36 H 0.046 0.954 37 H 0.046 0.954 38 H 0.089 0.911 39 H 0.098 0.902 40 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.580 4.217 4.394 6.292 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 O -0.220 6.220 3 C 0.288 3.712 4 O -0.389 6.389 5 C 0.072 3.928 6 N -0.838 5.838 7 S 2.785 3.215 8 O -0.940 6.940 9 O -0.905 6.905 10 C -0.780 4.780 11 C -0.227 4.227 12 S 0.419 5.581 13 C -0.348 4.348 14 C -0.143 4.143 15 O -0.327 6.327 16 Si 0.545 3.455 17 C -0.055 4.055 18 C -0.229 4.229 19 C 0.016 3.984 20 H 0.109 0.891 21 O -0.277 6.277 22 C -0.070 4.070 23 C -0.154 4.154 24 H 0.080 0.920 25 H 0.078 0.922 26 H 0.122 0.878 27 H 0.265 0.735 28 H 0.205 0.795 29 H 0.146 0.854 30 H 0.227 0.773 31 H -0.163 1.163 32 H -0.156 1.156 33 H 0.173 0.827 34 H 0.133 0.867 35 H 0.127 0.873 36 H 0.064 0.936 37 H 0.064 0.936 38 H 0.108 0.892 39 H 0.116 0.884 40 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges 1.627 3.551 5.986 7.148 hybrid contribution 0.151 -0.477 -1.531 1.610 sum 1.778 3.074 4.455 5.698 Atomic orbital electron populations 1.23334 0.76888 1.04029 1.02081 1.87057 1.22731 1.29908 1.82267 1.23928 0.91434 0.82801 0.73067 1.90680 1.66207 1.36846 1.45118 1.20811 0.85271 0.92653 0.94037 1.55177 1.76047 1.24720 1.27816 1.02088 0.74062 0.71967 0.73334 1.93631 1.74931 1.68854 1.56563 1.93700 1.32703 1.80982 1.83103 1.30071 1.08598 1.20830 1.18546 1.25942 1.04535 0.97334 0.94905 1.84467 0.95984 1.68286 1.09411 1.24951 0.99945 1.13773 0.96154 1.24369 0.88214 0.90311 1.11381 1.86653 1.66691 1.14946 1.64441 0.95445 0.85076 0.90600 0.74419 1.19535 0.90794 0.96131 0.99035 1.24592 0.98958 1.04417 0.94963 1.22838 0.86267 0.94748 0.94505 0.89069 1.87916 1.13861 1.72009 1.53883 1.22910 0.85843 1.00338 0.97929 1.23532 0.96130 0.93079 1.02640 0.92016 0.92182 0.87798 0.73501 0.79472 0.85437 0.77314 1.16331 1.15604 0.82701 0.86749 0.87337 0.93566 0.93570 0.89249 0.88397 0.85754 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 29. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.03 10.65 101.05 1.08 1.10 16 2 O -0.31 -0.84 6.33 -47.54 -0.30 -1.14 16 3 C 0.45 0.92 7.26 36.01 0.26 1.18 16 4 O -0.50 -1.98 15.57 -18.75 -0.29 -2.27 16 5 C 0.16 -0.10 1.28 -132.15 -0.17 -0.26 16 6 N -1.08 0.46 5.07 0.27 0.00 0.47 16 7 S 2.70 4.56 5.75 -107.50 -0.62 3.94 16 8 O -0.95 -4.67 17.81 -57.17 -1.02 -5.69 16 9 O -0.92 -3.09 13.28 -67.38 -0.89 -3.98 16 10 C -0.68 -0.04 3.77 -41.21 -0.16 -0.19 16 11 C -0.09 0.11 8.51 29.04 0.25 0.36 16 12 S 0.15 -0.32 20.60 -107.50 -2.21 -2.53 16 13 C -0.23 0.29 5.70 -36.00 -0.21 0.08 16 14 C -0.03 0.05 2.96 36.01 0.11 0.16 16 15 O -0.52 -0.11 12.88 -35.23 -0.45 -0.56 16 16 Si 0.65 -1.39 30.98 -169.99 -5.27 -6.65 16 17 C -0.03 0.00 9.66 -41.21 -0.40 -0.40 16 18 C -0.19 0.44 6.88 -25.92 -0.18 0.26 16 19 C 0.08 -0.22 4.37 -25.92 -0.11 -0.33 16 20 H 0.09 -0.41 7.87 -51.92 -0.41 -0.82 16 21 O -0.36 0.73 10.14 -35.23 -0.36 0.37 16 22 C 0.03 -0.10 10.85 101.05 1.10 1.00 16 23 C -0.12 0.25 7.06 -25.92 -0.18 0.06 16 24 H 0.06 0.02 7.97 -51.93 -0.41 -0.39 16 25 H 0.06 0.04 8.14 -51.93 -0.42 -0.39 16 26 H 0.10 -0.05 8.14 -51.93 -0.42 -0.48 16 27 H 0.43 -0.84 8.83 -34.46 -0.30 -1.14 16 28 H 0.19 -0.50 7.89 -52.49 -0.41 -0.92 16 29 H 0.13 -0.39 7.96 -51.93 -0.41 -0.80 16 30 H 0.38 -0.90 8.70 45.56 0.40 -0.50 16 31 H -0.24 0.05 7.11 56.52 0.40 0.45 16 32 H -0.23 -0.17 7.11 56.52 0.40 0.23 16 33 H 0.16 0.04 8.06 -52.48 -0.42 -0.39 16 34 H 0.11 -0.39 8.10 -51.93 -0.42 -0.81 16 35 H 0.11 -0.26 2.71 -51.93 -0.14 -0.40 16 36 H 0.05 -0.20 8.14 -51.93 -0.42 -0.62 16 37 H 0.05 -0.21 8.14 -51.93 -0.42 -0.64 16 38 H 0.09 -0.36 8.14 -51.93 -0.42 -0.78 16 39 H 0.10 -0.26 8.11 -51.93 -0.42 -0.68 16 40 H 0.12 -0.27 7.35 -51.93 -0.38 -0.65 16 LS Contribution 355.82 15.07 5.36 5.36 Total: 0.00 -10.05 355.82 -9.32 -19.37 By element: Atomic # 1 Polarization: -5.06 SS G_CDS: -4.66 Total: -9.71 kcal Atomic # 6 Polarization: 1.64 SS G_CDS: 1.39 Total: 3.03 kcal Atomic # 7 Polarization: 0.46 SS G_CDS: 0.00 Total: 0.47 kcal Atomic # 8 Polarization: -9.96 SS G_CDS: -3.32 Total: -13.27 kcal Atomic # 14 Polarization: -1.39 SS G_CDS: -5.27 Total: -6.65 kcal Atomic # 16 Polarization: 4.24 SS G_CDS: -2.83 Total: 1.41 kcal Total LS contribution 5.36 Total: 5.36 kcal Total: -10.05 -9.32 -19.37 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_40_14247464_15065232.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -110.677 kcal (2) G-P(sol) polarization free energy of solvation -10.047 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -120.724 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.323 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -19.370 kcal (6) G-S(sol) free energy of system = (1) + (5) -130.047 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.54 seconds