Wall clock time and date at job start Tue Mar 9 2021 14:17:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45198 * 1 3 3 C 1.34224 * 117.00353 * 2 1 4 4 O 1.20824 * 119.99849 * 5.22513 * 3 2 1 5 5 C 1.50705 * 120.00209 * 185.22473 * 3 2 1 6 6 N 1.46500 * 112.84692 * 35.95064 * 5 3 2 7 7 S 1.65592 * 120.00058 * 288.82554 * 6 5 3 8 8 O 1.42100 * 106.40444 * 185.34018 * 7 6 5 9 9 O 1.42099 * 106.40177 * 52.41772 * 7 6 5 10 10 C 1.76198 * 107.22258 * 298.87928 * 7 6 5 11 11 C 1.33390 * 122.54255 * 98.45089 * 10 7 6 12 12 S 1.75883 * 109.59768 * 180.02562 * 11 10 7 13 13 C 1.75885 * 90.96789 * 359.97438 * 12 11 10 14 14 C 1.50704 * 125.20146 * 179.97438 * 13 12 11 15 15 O 1.42910 * 109.46957 * 114.78496 * 14 13 12 16 16 Si 1.86293 * 109.47336 * 354.78216 * 14 13 12 17 17 C 1.33388 * 109.59759 * 0.23205 * 13 12 11 18 18 C 1.53782 * 113.69028 * 264.68252 * 5 3 2 19 19 C 1.53776 * 87.07985 * 220.00854 * 18 5 3 20 20 H 1.09007 * 113.61520 * 139.97901 * 19 18 5 21 21 O 1.42897 * 113.69202 * 270.87364 * 19 18 5 22 22 C 1.42902 * 113.99891 * 247.53955 * 21 19 18 23 23 C 1.53780 * 87.08537 * 25.43488 * 19 18 5 24 24 H 1.09005 * 109.46878 * 304.69596 * 1 2 3 25 25 H 1.08998 * 109.46905 * 64.69477 * 1 2 3 26 26 H 1.08998 * 109.46918 * 184.69986 * 1 2 3 27 27 H 0.97003 * 119.99935 * 108.83341 * 6 5 3 28 28 H 1.07998 * 125.19821 * 359.97438 * 11 10 7 29 29 H 1.08998 * 109.46992 * 234.77659 * 14 13 12 30 30 H 0.96700 * 113.99391 * 299.99704 * 15 14 13 31 31 H 1.48508 * 109.99869 * 58.67880 * 16 14 13 32 32 H 1.48502 * 110.00310 * 179.97438 * 16 14 13 33 33 H 1.08003 * 122.54310 * 179.75051 * 17 13 12 34 34 H 1.09002 * 113.61617 * 334.55586 * 18 5 3 35 35 H 1.09000 * 113.61601 * 105.45737 * 18 5 3 36 36 H 1.09000 * 109.46972 * 299.99365 * 22 21 19 37 37 H 1.08997 * 109.47423 * 59.99565 * 22 21 19 38 38 H 1.09001 * 109.47307 * 179.97438 * 22 21 19 39 39 H 1.08996 * 113.61207 * 220.02476 * 23 19 18 40 40 H 1.08998 * 113.61708 * 89.11246 * 23 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1959 0.0000 4 8 1.4073 2.2073 0.0953 5 6 3.5616 1.2772 -0.1188 6 7 4.1186 0.2503 -1.0028 7 16 4.1371 -1.3343 -0.5224 8 8 4.8431 -2.0499 -1.5268 9 8 2.8080 -1.6507 -0.1317 10 6 5.1198 -1.4256 0.9372 11 6 4.5877 -1.4480 2.1602 12 16 5.8704 -1.5412 3.3600 13 6 7.0933 -1.5454 2.0958 14 6 8.5811 -1.6121 2.3265 15 8 9.0904 -2.8387 1.7990 16 14 8.9304 -1.5296 4.1546 17 6 6.5028 -1.4748 0.9018 18 6 4.2838 1.3828 1.2347 19 6 5.2263 2.3959 0.5638 20 1 5.4853 3.2405 1.2023 21 8 6.3671 1.7969 -0.0541 22 6 7.6064 2.1136 0.5830 23 6 4.0800 2.6940 -0.4170 24 1 -0.3633 0.5850 0.8450 25 1 -0.3633 0.4393 -0.9291 26 1 -0.3633 -1.0242 0.0842 27 1 4.4768 0.4986 -1.8694 28 1 3.5309 -1.4134 2.3800 29 1 9.0643 -0.7730 1.8260 30 1 8.7038 -3.6295 2.1994 31 1 8.2506 -2.6504 4.8526 32 1 10.3943 -1.5951 4.3955 33 1 7.0612 -1.4595 -0.0225 34 1 3.6696 1.8147 2.0249 35 1 4.7790 0.4605 1.5385 36 1 7.7596 3.1927 0.5636 37 1 7.5822 1.7686 1.6167 38 1 8.4228 1.6209 0.0549 39 1 4.4107 2.8302 -1.4466 40 1 3.4100 3.4843 -0.0784 There are 61 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 61 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_40_14247464_15065232.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 14:17:48 Heat of formation + Delta-G solvation = -133.973092 kcal Electronic energy + Delta-G solvation = -31362.361375 eV Core-core repulsion = 26979.709020 eV Total energy + Delta-G solvation = -4382.652356 eV No. of doubly occupied orbitals = 61 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 364.062 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -42.17435 -40.32696 -39.48226 -38.31456 -37.70467 -37.57998 -37.08488 -36.91264 -33.55041 -31.90718 -29.15991 -27.62382 -27.30493 -26.88130 -26.13733 -24.86888 -22.55318 -21.44516 -20.97807 -19.96939 -19.34629 -18.92481 -18.71862 -17.93802 -17.86832 -17.60947 -17.42522 -17.23963 -16.87873 -16.35698 -16.03949 -15.88918 -15.55222 -15.29450 -14.95044 -14.84298 -14.49028 -14.35237 -14.19330 -13.85291 -13.82196 -13.37321 -13.29518 -13.21933 -13.14046 -12.86710 -12.83357 -12.81400 -12.51525 -12.39315 -12.28237 -12.00299 -11.83804 -11.74946 -11.67857 -11.50081 -10.79524 -10.61083 -10.42261 -10.03459 -9.76195 -5.09218 -0.78430 -0.46669 0.37050 0.62422 0.94282 1.05453 1.21800 1.51457 1.72141 1.88009 1.91095 2.65664 2.77654 2.98461 3.27170 3.28341 3.39735 3.56381 3.66770 3.78541 3.94376 4.05455 4.25960 4.31450 4.35725 4.39435 4.49992 4.56427 4.61892 4.67864 4.72508 4.74950 4.76849 4.83950 4.91913 4.96127 4.97230 5.05781 5.08521 5.41443 5.85858 6.35125 6.37800 6.66478 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.023 3.977 2 O -0.318 6.318 3 C 0.446 3.554 4 O -0.525 6.525 5 C 0.157 3.843 6 N -1.071 6.071 7 S 2.710 3.290 8 O -0.989 6.989 9 O -0.937 6.937 10 C -0.686 4.686 11 C -0.089 4.089 12 S 0.194 5.806 13 C -0.230 4.230 14 C -0.038 4.038 15 O -0.541 6.541 16 Si 0.721 3.279 17 C -0.036 4.036 18 C -0.189 4.189 19 C 0.080 3.920 20 H 0.113 0.887 21 O -0.374 6.374 22 C 0.019 3.981 23 C -0.113 4.113 24 H 0.065 0.935 25 H 0.059 0.941 26 H 0.116 0.884 27 H 0.434 0.566 28 H 0.200 0.800 29 H 0.142 0.858 30 H 0.387 0.613 31 H -0.263 1.263 32 H -0.274 1.274 33 H 0.147 0.853 34 H 0.127 0.873 35 H 0.109 0.891 36 H 0.053 0.947 37 H 0.058 0.942 38 H 0.089 0.911 39 H 0.101 0.899 40 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.027 5.014 5.686 7.848 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.232 6.232 3 C 0.287 3.713 4 O -0.414 6.414 5 C 0.065 3.935 6 N -0.833 5.833 7 S 2.798 3.202 8 O -0.979 6.979 9 O -0.927 6.927 10 C -0.788 4.788 11 C -0.229 4.229 12 S 0.458 5.542 13 C -0.348 4.348 14 C -0.150 4.150 15 O -0.350 6.350 16 Si 0.623 3.377 17 C -0.065 4.065 18 C -0.227 4.227 19 C 0.022 3.978 20 H 0.131 0.869 21 O -0.292 6.292 22 C -0.077 4.077 23 C -0.152 4.152 24 H 0.084 0.916 25 H 0.078 0.922 26 H 0.134 0.866 27 H 0.272 0.728 28 H 0.217 0.783 29 H 0.160 0.840 30 H 0.237 0.763 31 H -0.188 1.188 32 H -0.200 1.200 33 H 0.164 0.836 34 H 0.145 0.855 35 H 0.127 0.873 36 H 0.071 0.929 37 H 0.077 0.923 38 H 0.107 0.893 39 H 0.119 0.881 40 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges 2.052 4.348 7.239 8.690 hybrid contribution 0.037 -0.749 -1.874 2.018 sum 2.089 3.599 5.365 6.789 Atomic orbital electron populations 1.23490 0.76372 1.04955 1.02286 1.87062 1.23521 1.30467 1.82183 1.24478 0.92429 0.82238 0.72152 1.90658 1.66964 1.37391 1.46379 1.21062 0.83686 0.93348 0.95398 1.54937 1.75931 1.24108 1.28282 1.01405 0.73505 0.72038 0.73204 1.93577 1.75570 1.70338 1.58460 1.93668 1.33963 1.81658 1.83417 1.29709 1.08432 1.22650 1.18019 1.26173 1.05585 0.96299 0.94796 1.84367 0.94720 1.67121 1.08025 1.25011 1.00362 1.13137 0.96243 1.24623 0.88045 0.90216 1.12077 1.86627 1.67222 1.15935 1.65191 0.94640 0.81593 0.88918 0.72578 1.19486 0.90730 0.97061 0.99234 1.24677 0.98902 1.04838 0.94267 1.22850 0.85804 0.95017 0.94133 0.86932 1.87902 1.14524 1.72314 1.54483 1.23051 0.85184 1.00909 0.98564 1.23571 0.96443 0.91893 1.03278 0.91615 0.92193 0.86612 0.72815 0.78259 0.84021 0.76309 1.18825 1.20006 0.83553 0.85452 0.87265 0.92865 0.92305 0.89278 0.88061 0.85630 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.06 10.65 113.37 1.21 1.27 16 2 O -0.32 -2.01 6.33 -43.43 -0.27 -2.29 16 3 C 0.45 2.10 7.26 71.24 0.52 2.62 16 4 O -0.52 -4.49 15.57 21.97 0.34 -4.15 16 5 C 0.16 -0.16 1.28 3.39 0.00 -0.15 16 6 N -1.07 0.05 5.07 -153.07 -0.78 -0.72 16 7 S 2.71 12.21 5.75 -56.49 -0.32 11.89 16 8 O -0.99 -11.53 17.81 -128.00 -2.28 -13.81 16 9 O -0.94 -7.38 13.28 -118.24 -1.57 -8.95 16 10 C -0.69 -0.16 3.77 21.22 0.08 -0.08 16 11 C -0.09 0.29 8.51 66.72 0.57 0.86 16 12 S 0.19 -1.06 20.60 -56.49 -1.16 -2.23 16 13 C -0.23 0.74 5.70 24.59 0.14 0.88 16 14 C -0.04 0.16 2.96 71.24 0.21 0.37 16 15 O -0.54 -0.16 12.88 -148.98 -1.92 -2.08 16 16 Si 0.72 -3.62 30.98 68.60 2.13 -1.49 16 17 C -0.04 0.00 9.66 21.22 0.20 0.21 16 18 C -0.19 1.03 6.88 31.12 0.21 1.24 16 19 C 0.08 -0.55 4.37 31.12 0.14 -0.42 16 20 H 0.11 -1.24 7.87 -2.38 -0.02 -1.26 16 21 O -0.37 1.79 10.14 -148.98 -1.51 0.28 16 22 C 0.02 -0.16 10.85 113.37 1.23 1.07 16 23 C -0.11 0.52 7.06 31.12 0.22 0.74 16 24 H 0.07 0.10 7.97 -2.38 -0.02 0.08 16 25 H 0.06 0.14 8.14 -2.39 -0.02 0.12 16 26 H 0.12 -0.05 8.14 -2.39 -0.02 -0.07 16 27 H 0.43 -1.20 8.83 -96.75 -0.85 -2.06 16 28 H 0.20 -1.21 7.89 -2.91 -0.02 -1.24 16 29 H 0.14 -1.02 7.96 -2.39 -0.02 -1.04 16 30 H 0.39 -1.85 8.70 -74.06 -0.64 -2.49 16 31 H -0.26 0.32 7.11 99.48 0.71 1.02 16 32 H -0.27 -0.52 7.11 99.48 0.71 0.18 16 33 H 0.15 0.20 8.06 -2.91 -0.02 0.18 16 34 H 0.13 -1.03 8.10 -2.39 -0.02 -1.05 16 35 H 0.11 -0.61 2.71 -2.39 -0.01 -0.61 16 36 H 0.05 -0.53 8.14 -2.39 -0.02 -0.55 16 37 H 0.06 -0.65 8.14 -2.39 -0.02 -0.67 16 38 H 0.09 -0.77 8.14 -2.39 -0.02 -0.79 16 39 H 0.10 -0.55 8.11 -2.39 -0.02 -0.57 16 40 H 0.13 -0.58 7.35 -2.39 -0.02 -0.59 16 Total: 0.00 -23.40 355.82 -2.97 -26.37 By element: Atomic # 1 Polarization: -11.05 SS G_CDS: -0.35 Total: -11.40 kcal Atomic # 6 Polarization: 3.86 SS G_CDS: 4.73 Total: 8.60 kcal Atomic # 7 Polarization: 0.05 SS G_CDS: -0.78 Total: -0.72 kcal Atomic # 8 Polarization: -23.80 SS G_CDS: -7.21 Total: -31.01 kcal Atomic # 14 Polarization: -3.62 SS G_CDS: 2.13 Total: -1.49 kcal Atomic # 16 Polarization: 11.15 SS G_CDS: -1.49 Total: 9.66 kcal Total: -23.40 -2.97 -26.37 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_40_14247464_15065232.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -107.608 kcal (2) G-P(sol) polarization free energy of solvation -23.399 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -131.007 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.966 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -26.365 kcal (6) G-S(sol) free energy of system = (1) + (5) -133.973 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds