Wall clock time and date at job start Tue Mar 9 2021 14:18:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42904 * 1 3 3 Si 1.86293 * 109.47220 * 2 1 4 4 C 1.50702 * 109.46584 * 120.00089 * 2 1 3 5 5 C 1.33390 * 125.20683 * 65.00165 * 4 2 1 6 6 C 1.38422 * 114.91870 * 180.02562 * 5 4 2 7 7 S 1.76205 * 122.53601 * 180.02562 * 6 5 4 8 8 O 1.42097 * 106.39943 * 23.54492 * 7 6 5 9 9 O 1.42104 * 106.40000 * 156.46222 * 7 6 5 10 10 N 1.65600 * 107.22121 * 270.00627 * 7 6 5 11 11 C 1.46490 * 120.00074 * 64.99789 * 10 7 6 12 12 C 1.53006 * 109.47153 * 165.00336 * 11 10 7 13 13 C 1.53000 * 109.46935 * 180.02562 * 12 11 10 14 14 H 1.08998 * 112.85046 * 45.33530 * 13 12 11 15 15 C 1.53781 * 113.61246 * 176.52490 * 13 12 11 16 16 C 1.53783 * 87.08045 * 139.97990 * 15 13 12 17 17 H 1.08999 * 113.61632 * 220.02191 * 16 15 13 18 18 F 1.39906 * 113.61207 * 89.20489 * 16 15 13 19 19 C 1.53779 * 113.61610 * 274.13214 * 13 12 11 20 20 C 1.33383 * 114.92604 * 0.02562 * 6 5 4 21 21 S 1.75889 * 109.59330 * 359.97438 * 20 6 5 22 22 H 0.96698 * 114.00443 * 300.00109 * 1 2 3 23 23 H 1.09002 * 109.47270 * 239.99770 * 2 1 3 24 24 H 1.48503 * 110.00190 * 178.67605 * 3 2 1 25 25 H 1.48504 * 110.00113 * 299.99850 * 3 2 1 26 26 H 1.07999 * 122.53431 * 0.04065 * 5 4 2 27 27 H 0.97001 * 119.99867 * 245.00089 * 10 7 6 28 28 H 1.09007 * 109.47436 * 284.99972 * 11 10 7 29 29 H 1.09002 * 109.47245 * 45.00369 * 11 10 7 30 30 H 1.08997 * 109.46518 * 299.99984 * 12 11 10 31 31 H 1.08993 * 109.47225 * 60.00053 * 12 11 10 32 32 H 1.08996 * 113.62030 * 254.52802 * 15 13 12 33 33 H 1.09002 * 113.61421 * 25.35328 * 15 13 12 34 34 H 1.08996 * 113.61729 * 334.57250 * 19 13 12 35 35 H 1.09003 * 113.61118 * 105.47401 * 19 13 12 36 36 H 1.07996 * 125.20664 * 180.02562 * 20 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0501 1.7564 0.0000 4 6 1.9313 -0.7105 1.2305 5 6 1.7533 -2.0052 1.4974 6 6 2.3052 -2.4357 2.6917 7 16 2.1899 -4.1059 3.2413 8 8 1.9860 -4.8975 2.0791 9 8 3.2722 -4.3082 4.1396 10 7 0.8055 -4.2313 4.1413 11 6 -0.5007 -4.0384 3.5068 12 6 -1.5999 -4.5641 4.4323 13 6 -2.9641 -4.3632 3.7692 14 1 -2.9734 -4.6621 2.7211 15 6 -4.1354 -4.9371 4.5838 16 6 -4.9280 -3.6826 4.1801 17 1 -5.5415 -3.2763 4.9842 18 9 -5.6316 -3.8266 2.9795 19 6 -3.5715 -2.9727 4.0187 20 6 2.9308 -1.4906 3.3948 21 16 2.8409 0.0411 2.5349 22 1 -0.3934 0.4417 0.7650 23 1 1.7924 -0.5139 -0.8900 24 1 3.5347 1.7702 0.0322 25 1 1.5616 2.4678 -1.2085 26 1 1.2193 -2.6674 0.8321 27 1 0.8595 -4.4325 5.0887 28 1 -0.6605 -2.9765 3.3196 29 1 -0.5298 -4.5823 2.5626 30 1 -1.4401 -5.6259 4.6195 31 1 -1.5708 -4.0203 5.3764 32 1 -4.5417 -5.8613 4.1728 33 1 -3.9333 -5.0022 5.6529 34 1 -3.2155 -2.4983 4.9332 35 1 -3.5232 -2.3132 3.1521 36 1 3.4188 -1.6427 4.3461 There are 53 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 53 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_40_14412254_15065232.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 14:18:45 Heat of formation + Delta-G solvation = -100.007654 kcal Electronic energy + Delta-G solvation = -22979.746831 eV Core-core repulsion = 19213.386068 eV Total energy + Delta-G solvation = -3766.360763 eV No. of doubly occupied orbitals = 53 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 322.054 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -48.61524 -39.51887 -39.42815 -38.42078 -37.53559 -37.05093 -36.45123 -31.82492 -31.14917 -27.21440 -26.77429 -25.57864 -24.94062 -22.82931 -21.43443 -20.59336 -20.04149 -19.20166 -18.56110 -17.89376 -17.69089 -17.20378 -17.04909 -16.62208 -16.34560 -16.15809 -15.91428 -15.60799 -15.38586 -14.95091 -14.67019 -14.29166 -14.12767 -14.02965 -13.95755 -13.57379 -13.37069 -13.31322 -13.22479 -13.06337 -12.94941 -12.54926 -12.40291 -12.18863 -11.84946 -11.78971 -11.66214 -11.15133 -10.91995 -10.66584 -10.50212 -10.18653 -9.83083 -5.20928 -0.79302 -0.47261 0.33834 0.58302 0.97479 1.16264 1.53585 1.84511 2.06744 2.66764 3.18987 3.34877 3.40339 3.44216 3.63399 3.69067 3.76915 3.90803 3.93239 4.04872 4.20474 4.31356 4.37472 4.45308 4.59575 4.64593 4.66911 4.80239 4.88613 4.89630 4.91383 5.01548 5.03376 5.10321 5.24418 5.31392 5.56904 6.06565 6.66320 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.545 6.545 2 C -0.033 4.033 3 Si 0.736 3.264 4 C -0.235 4.235 5 C -0.058 4.058 6 C -0.694 4.694 7 S 2.725 3.275 8 O -0.989 6.989 9 O -0.985 6.985 10 N -1.102 6.102 11 C 0.110 3.890 12 C -0.109 4.109 13 C -0.111 4.111 14 H 0.084 0.916 15 C -0.154 4.154 16 C 0.042 3.958 17 H 0.111 0.889 18 F -0.222 7.222 19 C -0.151 4.151 20 C -0.084 4.084 21 S 0.193 5.807 22 H 0.397 0.603 23 H 0.119 0.881 24 H -0.266 1.266 25 H -0.270 1.270 26 H 0.150 0.850 27 H 0.430 0.570 28 H 0.083 0.917 29 H 0.068 0.932 30 H 0.075 0.925 31 H 0.095 0.905 32 H 0.069 0.931 33 H 0.120 0.880 34 H 0.123 0.877 35 H 0.076 0.924 36 H 0.205 0.795 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.595 5.468 6.698 9.028 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.354 6.354 2 C -0.145 4.145 3 Si 0.638 3.362 4 C -0.353 4.353 5 C -0.087 4.087 6 C -0.795 4.795 7 S 2.814 3.186 8 O -0.979 6.979 9 O -0.975 6.975 10 N -0.866 5.866 11 C -0.016 4.016 12 C -0.148 4.148 13 C -0.131 4.131 14 H 0.102 0.898 15 C -0.192 4.192 16 C 0.006 3.994 17 H 0.128 0.872 18 F -0.203 7.203 19 C -0.188 4.188 20 C -0.223 4.223 21 S 0.456 5.544 22 H 0.248 0.752 23 H 0.136 0.864 24 H -0.192 1.192 25 H -0.195 1.195 26 H 0.167 0.833 27 H 0.268 0.732 28 H 0.101 0.899 29 H 0.087 0.913 30 H 0.094 0.906 31 H 0.114 0.886 32 H 0.088 0.912 33 H 0.138 0.862 34 H 0.141 0.859 35 H 0.094 0.906 36 H 0.222 0.778 Dipole moment (debyes) X Y Z Total from point charges -0.947 6.616 5.584 8.709 hybrid contribution -0.619 -1.609 -0.606 1.827 sum -1.566 5.007 4.979 7.233 Atomic orbital electron populations 1.86521 1.16353 1.82086 1.50399 1.24571 0.85538 1.09681 0.94729 0.94286 0.79211 0.74858 0.87814 1.25179 1.08746 0.98345 1.02986 1.19660 0.98757 0.95326 0.94979 1.29788 1.16870 1.25893 1.06952 1.00750 0.72224 0.73164 0.72467 1.93558 1.85920 1.67105 1.51324 1.93569 1.52973 1.85727 1.65256 1.55191 1.19965 1.87923 1.23538 1.21506 0.81176 1.02169 0.96763 1.21713 0.91403 1.02687 0.98953 1.22520 0.93876 0.96702 0.99978 0.89814 1.23637 0.95688 0.97096 1.02771 1.22776 0.93229 1.00053 0.83294 0.87151 1.92777 1.80993 1.96772 1.49786 1.23726 0.93618 0.96804 1.04666 1.26237 0.97123 0.95650 1.03296 1.84228 1.49509 1.09542 1.11073 0.75229 0.86409 1.19205 1.19543 0.83287 0.73215 0.89915 0.91309 0.90604 0.88640 0.91244 0.86175 0.85914 0.90558 0.77819 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.55 1.15 12.88 -148.98 -1.92 -0.77 16 2 C -0.03 0.06 2.96 71.24 0.21 0.28 16 3 Si 0.74 -2.61 30.98 68.60 2.13 -0.49 16 4 C -0.23 0.31 5.70 24.59 0.14 0.45 16 5 C -0.06 -0.06 9.59 21.22 0.20 0.14 16 6 C -0.69 -0.11 5.86 21.21 0.12 0.02 16 7 S 2.73 6.89 5.80 -56.49 -0.33 6.57 16 8 O -0.99 -10.10 17.10 -128.00 -2.19 -12.29 16 9 O -0.99 -7.49 17.64 -128.00 -2.26 -9.74 16 10 N -1.10 5.30 6.00 -187.49 -1.12 4.17 16 11 C 0.11 -0.63 6.22 86.38 0.54 -0.09 16 12 C -0.11 0.91 5.18 30.60 0.16 1.07 16 13 C -0.11 0.65 3.62 -10.27 -0.04 0.61 16 14 H 0.08 -0.21 8.14 -2.39 -0.02 -0.23 16 15 C -0.15 0.86 7.54 31.12 0.23 1.10 16 16 C 0.04 -0.14 5.69 31.18 0.18 0.04 16 17 H 0.11 -0.74 8.14 -2.39 -0.02 -0.76 16 18 F -0.22 -1.12 17.39 44.97 0.78 -0.34 16 19 C -0.15 1.06 7.54 31.18 0.24 1.29 16 20 C -0.08 0.25 10.70 66.72 0.71 0.97 16 21 S 0.19 -0.85 20.60 -56.49 -1.16 -2.01 16 22 H 0.40 -4.28 8.70 -74.06 -0.64 -4.92 16 23 H 0.12 -0.07 7.96 -2.39 -0.02 -0.09 16 24 H -0.27 -0.27 7.11 99.48 0.71 0.43 16 25 H -0.27 -0.77 7.11 99.48 0.71 -0.06 16 26 H 0.15 0.29 7.96 -2.91 -0.02 0.27 16 27 H 0.43 -3.90 8.65 -96.74 -0.84 -4.74 16 28 H 0.08 -0.70 8.14 -2.38 -0.02 -0.72 16 29 H 0.07 -0.18 7.75 -2.39 -0.02 -0.20 16 30 H 0.08 -0.57 8.14 -2.39 -0.02 -0.59 16 31 H 0.10 -1.16 7.88 -2.39 -0.02 -1.18 16 32 H 0.07 -0.20 8.14 -2.39 -0.02 -0.22 16 33 H 0.12 -1.17 8.10 -2.39 -0.02 -1.18 16 34 H 0.12 -1.42 7.92 -2.39 -0.02 -1.44 16 35 H 0.08 -0.41 8.14 -2.39 -0.02 -0.43 16 36 H 0.20 -1.51 8.00 -2.91 -0.02 -1.54 16 Total: 0.00 -22.95 334.97 -3.70 -26.65 By element: Atomic # 1 Polarization: -17.29 SS G_CDS: -0.33 Total: -17.61 kcal Atomic # 6 Polarization: 3.17 SS G_CDS: 2.70 Total: 5.87 kcal Atomic # 7 Polarization: 5.30 SS G_CDS: -1.12 Total: 4.17 kcal Atomic # 8 Polarization: -16.44 SS G_CDS: -6.37 Total: -22.80 kcal Atomic # 9 Polarization: -1.12 SS G_CDS: 0.78 Total: -0.34 kcal Atomic # 14 Polarization: -2.61 SS G_CDS: 2.13 Total: -0.49 kcal Atomic # 16 Polarization: 6.05 SS G_CDS: -1.49 Total: 4.55 kcal Total: -22.95 -3.70 -26.65 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_40_14412254_15065232.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -73.355 kcal (2) G-P(sol) polarization free energy of solvation -22.952 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -96.307 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.701 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -26.653 kcal (6) G-S(sol) free energy of system = (1) + (5) -100.008 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds