Wall clock time and date at job start Tue Mar 9 2021 14:20:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45206 * 1 3 3 C 1.34224 * 116.99841 * 2 1 4 4 O 1.20828 * 120.00118 * 0.02562 * 3 2 1 5 5 C 1.50701 * 120.00059 * 179.97438 * 3 2 1 6 6 H 1.09002 * 109.47060 * 60.00008 * 5 3 2 7 7 C 1.53002 * 109.47419 * 180.02562 * 5 3 2 8 8 C 1.52997 * 109.47415 * 179.97438 * 7 5 3 9 9 C 1.53002 * 109.46978 * 300.00098 * 8 7 5 10 10 H 1.08996 * 109.46698 * 179.97438 * 9 8 7 11 11 N 1.46496 * 109.46704 * 299.99603 * 9 8 7 12 12 S 1.65606 * 119.99921 * 215.00135 * 11 9 8 13 13 O 1.42100 * 106.40132 * 178.54599 * 12 11 9 14 14 O 1.42105 * 106.40005 * 311.46091 * 12 11 9 15 15 C 1.76201 * 107.21761 * 64.99989 * 12 11 9 16 16 C 1.33382 * 122.54283 * 269.71111 * 15 12 11 17 17 S 1.75878 * 109.59337 * 179.90483 * 16 15 12 18 18 C 1.75883 * 90.97061 * 0.30304 * 17 16 15 19 19 C 1.50703 * 125.19996 * 179.79358 * 18 17 16 20 20 O 1.42902 * 109.47016 * 245.03998 * 19 18 17 21 21 Si 1.86293 * 109.47377 * 5.03993 * 19 18 17 22 22 C 1.33387 * 109.59191 * 359.82790 * 18 17 16 23 23 C 1.53002 * 109.47128 * 59.99726 * 9 8 7 24 24 C 1.52992 * 109.47106 * 300.00123 * 23 9 8 25 25 H 1.09002 * 109.47195 * 300.00371 * 1 2 3 26 26 H 1.08991 * 109.46936 * 60.00159 * 1 2 3 27 27 H 1.08998 * 109.46691 * 179.97438 * 1 2 3 28 28 H 1.09000 * 109.46986 * 300.00096 * 7 5 3 29 29 H 1.09002 * 109.47075 * 59.99368 * 7 5 3 30 30 H 1.09002 * 109.47045 * 59.99931 * 8 7 5 31 31 H 1.08998 * 109.47171 * 179.97438 * 8 7 5 32 32 H 0.97000 * 120.00576 * 35.00632 * 11 9 8 33 33 H 1.08003 * 125.20320 * 0.02735 * 16 15 12 34 34 H 1.09002 * 109.46891 * 125.03898 * 19 18 17 35 35 H 0.96695 * 113.99700 * 59.99714 * 20 19 18 36 36 H 1.48505 * 110.00173 * 180.02562 * 21 19 18 37 37 H 1.48498 * 110.00092 * 301.31909 * 21 19 18 38 38 H 1.08001 * 122.53501 * 179.97438 * 22 18 17 39 39 H 1.09002 * 109.47070 * 60.00059 * 23 9 8 40 40 H 1.08996 * 109.46550 * 179.97438 * 23 9 8 41 41 H 1.09002 * 109.47103 * 299.99915 * 24 23 9 42 42 H 1.08998 * 109.46862 * 180.02562 * 24 23 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4521 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4033 2.2093 0.0005 5 6 3.5663 1.2749 0.0006 6 1 3.9564 0.7806 -0.8892 7 6 4.0002 2.7421 0.0011 8 6 5.5280 2.8222 0.0023 9 6 6.0741 2.1285 1.2520 10 1 7.1626 2.1852 1.2526 11 7 5.5493 2.7926 2.4477 12 16 6.4921 2.9241 3.8028 13 8 5.7212 3.6370 4.7603 14 8 7.0294 1.6310 4.0448 15 6 7.8561 3.9606 3.3906 16 6 9.0020 3.4797 2.9063 17 16 10.1209 4.8047 2.6137 18 6 8.9377 5.9709 3.1911 19 6 9.1525 7.4605 3.2687 20 8 9.1292 7.8745 4.6363 21 14 10.8024 7.8901 2.5179 22 6 7.8216 5.3351 3.5505 23 6 5.6403 0.6613 1.2514 24 6 4.1124 0.5812 1.2502 25 1 -0.3634 0.5139 0.8900 26 1 -0.3633 0.5138 -0.8899 27 1 -0.3633 -1.0277 -0.0005 28 1 3.6108 3.2364 -0.8889 29 1 3.6100 3.2360 0.8910 30 1 5.9185 2.3282 -0.8874 31 1 5.8371 3.8675 0.0023 32 1 4.6496 3.1551 2.4458 33 1 9.2102 2.4364 2.7202 34 1 8.3602 7.9708 2.7210 35 1 9.8089 7.4593 5.1845 36 1 11.0265 9.3564 2.5888 37 1 11.8885 7.1756 3.2356 38 1 6.9567 5.8535 3.9374 39 1 6.0307 0.1673 0.3617 40 1 6.0297 0.1671 2.1414 41 1 3.7220 1.0753 2.1399 42 1 3.8034 -0.4640 1.2503 There are 61 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 61 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_40_14474854_15065232.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 14:20:26 Heat of formation + Delta-G solvation = -157.473888 kcal Electronic energy + Delta-G solvation = -28946.349246 eV Core-core repulsion = 24725.822392 eV Total energy + Delta-G solvation = -4220.526854 eV No. of doubly occupied orbitals = 61 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 362.078 amu Computer time = 1.66 seconds Orbital eigenvalues (eV) -41.77390 -39.97671 -39.56163 -38.20298 -37.70279 -37.45150 -36.84661 -34.91935 -32.01050 -31.91160 -30.97568 -28.60196 -27.27926 -25.05012 -24.88316 -23.85838 -21.96169 -21.56643 -21.00308 -19.97392 -19.15824 -18.74712 -18.58746 -17.96168 -17.78423 -17.70972 -17.50430 -16.86503 -16.47202 -16.13201 -15.84117 -15.53494 -15.43765 -15.00795 -14.95083 -14.47252 -14.29140 -14.20218 -14.03279 -13.92852 -13.87011 -13.66432 -13.37162 -13.16176 -13.03871 -12.98528 -12.91580 -12.66801 -12.51138 -12.41591 -12.34494 -12.14176 -11.80772 -11.72820 -11.67637 -11.52907 -11.17736 -10.87756 -10.61186 -10.30318 -9.91323 -5.21175 -0.77071 -0.53888 0.26003 0.52060 0.93050 1.10392 1.20594 1.41121 1.71034 1.78110 2.00881 2.70710 3.13282 3.28244 3.37403 3.43706 3.52637 3.59540 3.74836 3.76844 3.88999 3.97101 4.10563 4.15089 4.17038 4.21398 4.25204 4.26377 4.30259 4.34844 4.56821 4.60377 4.61721 4.67095 4.84902 4.88889 4.91943 4.96216 5.01464 5.04966 5.15480 5.21561 5.42368 5.83309 6.20212 6.74875 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 O -0.358 6.358 3 C 0.462 3.538 4 O -0.505 6.505 5 C -0.081 4.081 6 H 0.113 0.887 7 C -0.106 4.106 8 C -0.124 4.124 9 C 0.152 3.848 10 H 0.088 0.912 11 N -1.109 6.109 12 S 2.706 3.294 13 O -0.952 6.952 14 O -0.950 6.950 15 C -0.685 4.685 16 C -0.089 4.089 17 S 0.160 5.840 18 C -0.226 4.226 19 C -0.034 4.034 20 O -0.521 6.521 21 Si 0.651 3.349 22 C -0.041 4.041 23 C -0.138 4.138 24 C -0.111 4.111 25 H 0.064 0.936 26 H 0.063 0.937 27 H 0.103 0.897 28 H 0.079 0.921 29 H 0.073 0.927 30 H 0.083 0.917 31 H 0.080 0.920 32 H 0.420 0.580 33 H 0.186 0.814 34 H 0.130 0.870 35 H 0.378 0.622 36 H -0.233 1.233 37 H -0.239 1.239 38 H 0.157 0.843 39 H 0.082 0.918 40 H 0.088 0.912 41 H 0.070 0.930 42 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.850 -2.042 -6.491 7.377 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 O -0.274 6.274 3 C 0.305 3.695 4 O -0.392 6.392 5 C -0.100 4.100 6 H 0.131 0.869 7 C -0.144 4.144 8 C -0.163 4.163 9 C 0.045 3.955 10 H 0.106 0.894 11 N -0.870 5.870 12 S 2.792 3.208 13 O -0.942 6.942 14 O -0.940 6.940 15 C -0.785 4.785 16 C -0.228 4.228 17 S 0.424 5.576 18 C -0.344 4.344 19 C -0.147 4.147 20 O -0.328 6.328 21 Si 0.550 3.450 22 C -0.070 4.070 23 C -0.177 4.177 24 C -0.149 4.149 25 H 0.082 0.918 26 H 0.082 0.918 27 H 0.121 0.879 28 H 0.097 0.903 29 H 0.092 0.908 30 H 0.102 0.898 31 H 0.099 0.901 32 H 0.257 0.743 33 H 0.203 0.797 34 H 0.147 0.853 35 H 0.227 0.773 36 H -0.156 1.156 37 H -0.163 1.163 38 H 0.174 0.826 39 H 0.101 0.899 40 H 0.107 0.893 41 H 0.089 0.911 42 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges 4.458 -1.349 -6.321 7.852 hybrid contribution -1.649 0.282 1.203 2.061 sum 2.809 -1.067 -5.118 5.935 Atomic orbital electron populations 1.23312 0.75990 1.03972 1.02688 1.86506 1.23678 1.33386 1.83872 1.23852 0.92111 0.81411 0.72161 1.90692 1.67230 1.36376 1.44950 1.21177 0.86884 0.99524 1.02400 0.86921 1.21447 0.95488 0.93397 1.04084 1.21847 0.95198 1.01978 0.97259 1.20843 0.97921 0.92180 0.84584 0.89388 1.55711 1.28111 1.72839 1.30388 1.01734 0.72947 0.73683 0.72416 1.93622 1.68965 1.74378 1.57235 1.93612 1.79959 1.37179 1.83254 1.30064 1.18544 1.09687 1.20173 1.25937 0.95359 1.04142 0.97352 1.84444 1.16914 0.96456 1.59831 1.25017 0.98234 1.00348 1.10820 1.24426 1.13358 0.89087 0.87797 1.86654 1.58152 1.69307 1.18650 0.95323 0.74972 0.84554 0.90175 1.19618 0.99213 0.90674 0.97513 1.22093 0.95420 0.95789 1.04393 1.21503 0.95999 1.01519 0.95887 0.91760 0.91797 0.87878 0.90266 0.90806 0.89801 0.90104 0.74303 0.79676 0.85260 0.77347 1.15591 1.16344 0.82568 0.89945 0.89348 0.91119 0.89952 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 30. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 -0.02 10.56 101.05 1.07 1.04 16 2 O -0.36 -0.35 10.47 -39.24 -0.41 -0.76 16 3 C 0.46 0.57 7.25 36.01 0.26 0.83 16 4 O -0.51 -2.10 15.73 -18.75 -0.29 -2.40 16 5 C -0.08 0.16 2.63 -91.77 -0.24 -0.08 16 6 H 0.11 -0.41 8.14 -51.93 -0.42 -0.83 16 7 C -0.11 0.26 4.31 -26.73 -0.12 0.15 16 8 C -0.12 0.54 5.63 -26.73 -0.15 0.39 16 9 C 0.15 -0.55 2.98 -67.93 -0.20 -0.75 16 10 H 0.09 -0.45 7.38 -51.93 -0.38 -0.83 16 11 N -1.11 2.41 4.74 -4.89 -0.02 2.38 16 12 S 2.71 1.88 5.71 -107.50 -0.61 1.27 16 13 O -0.95 -4.12 17.63 -57.17 -1.01 -5.13 16 14 O -0.95 -2.66 16.90 -57.17 -0.97 -3.62 16 15 C -0.69 0.18 5.73 -41.21 -0.24 -0.06 16 16 C -0.09 0.14 10.23 29.04 0.30 0.44 16 17 S 0.16 -0.29 20.60 -107.50 -2.21 -2.51 16 18 C -0.23 0.14 5.70 -36.00 -0.21 -0.06 16 19 C -0.03 0.03 2.96 36.01 0.11 0.14 16 20 O -0.52 -0.40 12.88 -35.23 -0.45 -0.86 16 21 Si 0.65 -1.13 30.98 -169.99 -5.27 -6.40 16 22 C -0.04 -0.01 9.59 -41.21 -0.40 -0.41 16 23 C -0.14 0.43 5.64 -26.73 -0.15 0.28 16 24 C -0.11 0.24 4.98 -26.74 -0.13 0.11 16 25 H 0.06 -0.03 8.13 -51.93 -0.42 -0.45 16 26 H 0.06 -0.04 8.13 -51.93 -0.42 -0.46 16 27 H 0.10 -0.31 8.14 -51.93 -0.42 -0.73 16 28 H 0.08 -0.14 8.10 -51.93 -0.42 -0.56 16 29 H 0.07 -0.13 6.46 -51.93 -0.34 -0.46 16 30 H 0.08 -0.47 8.14 -51.93 -0.42 -0.89 16 31 H 0.08 -0.38 8.14 -51.93 -0.42 -0.80 16 32 H 0.42 -1.17 6.81 -34.47 -0.23 -1.41 16 33 H 0.19 -0.71 8.00 -52.48 -0.42 -1.13 16 34 H 0.13 -0.27 7.96 -51.93 -0.41 -0.68 16 35 H 0.38 -0.76 8.70 45.56 0.40 -0.36 16 36 H -0.23 -0.27 7.11 56.52 0.40 0.14 16 37 H -0.24 0.01 7.11 56.52 0.40 0.41 16 38 H 0.16 0.07 7.97 -52.49 -0.42 -0.35 16 39 H 0.08 -0.39 8.14 -51.93 -0.42 -0.81 16 40 H 0.09 -0.16 7.64 -51.93 -0.40 -0.55 16 41 H 0.07 -0.10 7.45 -51.93 -0.39 -0.49 16 42 H 0.08 -0.17 8.11 -51.93 -0.42 -0.60 16 LS Contribution 369.58 15.07 5.57 5.57 Total: 0.00 -10.90 369.58 -11.37 -22.27 By element: Atomic # 1 Polarization: -6.25 SS G_CDS: -5.59 Total: -11.84 kcal Atomic # 6 Polarization: 2.13 SS G_CDS: -0.10 Total: 2.03 kcal Atomic # 7 Polarization: 2.41 SS G_CDS: -0.02 Total: 2.38 kcal Atomic # 8 Polarization: -9.63 SS G_CDS: -3.13 Total: -12.76 kcal Atomic # 14 Polarization: -1.13 SS G_CDS: -5.27 Total: -6.40 kcal Atomic # 16 Polarization: 1.59 SS G_CDS: -2.83 Total: -1.24 kcal Total LS contribution 5.57 Total: 5.57 kcal Total: -10.90 -11.37 -22.27 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_40_14474854_15065232.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -135.205 kcal (2) G-P(sol) polarization free energy of solvation -10.899 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -146.105 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.369 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -22.268 kcal (6) G-S(sol) free energy of system = (1) + (5) -157.474 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.66 seconds