Wall clock time and date at job start Tue Mar 9 2021 14:20:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45206 * 1 3 3 C 1.34224 * 116.99841 * 2 1 4 4 O 1.20828 * 120.00118 * 0.02562 * 3 2 1 5 5 C 1.50701 * 120.00059 * 179.97438 * 3 2 1 6 6 H 1.09002 * 109.47060 * 60.00008 * 5 3 2 7 7 C 1.53002 * 109.47419 * 180.02562 * 5 3 2 8 8 C 1.52997 * 109.47415 * 179.97438 * 7 5 3 9 9 C 1.53002 * 109.46978 * 300.00098 * 8 7 5 10 10 H 1.08996 * 109.46698 * 179.97438 * 9 8 7 11 11 N 1.46496 * 109.46704 * 299.99603 * 9 8 7 12 12 S 1.65606 * 119.99921 * 215.00135 * 11 9 8 13 13 O 1.42100 * 106.40132 * 178.54599 * 12 11 9 14 14 O 1.42105 * 106.40005 * 311.46091 * 12 11 9 15 15 C 1.76201 * 107.21761 * 64.99989 * 12 11 9 16 16 C 1.33382 * 122.54283 * 269.71111 * 15 12 11 17 17 S 1.75878 * 109.59337 * 179.90483 * 16 15 12 18 18 C 1.75883 * 90.97061 * 0.30304 * 17 16 15 19 19 C 1.50703 * 125.19996 * 179.79358 * 18 17 16 20 20 O 1.42902 * 109.47016 * 245.03998 * 19 18 17 21 21 Si 1.86293 * 109.47377 * 5.03993 * 19 18 17 22 22 C 1.33387 * 109.59191 * 359.82790 * 18 17 16 23 23 C 1.53002 * 109.47128 * 59.99726 * 9 8 7 24 24 C 1.52992 * 109.47106 * 300.00123 * 23 9 8 25 25 H 1.09002 * 109.47195 * 300.00371 * 1 2 3 26 26 H 1.08991 * 109.46936 * 60.00159 * 1 2 3 27 27 H 1.08998 * 109.46691 * 179.97438 * 1 2 3 28 28 H 1.09000 * 109.46986 * 300.00096 * 7 5 3 29 29 H 1.09002 * 109.47075 * 59.99368 * 7 5 3 30 30 H 1.09002 * 109.47045 * 59.99931 * 8 7 5 31 31 H 1.08998 * 109.47171 * 179.97438 * 8 7 5 32 32 H 0.97000 * 120.00576 * 35.00632 * 11 9 8 33 33 H 1.08003 * 125.20320 * 0.02735 * 16 15 12 34 34 H 1.09002 * 109.46891 * 125.03898 * 19 18 17 35 35 H 0.96695 * 113.99700 * 59.99714 * 20 19 18 36 36 H 1.48505 * 110.00173 * 180.02562 * 21 19 18 37 37 H 1.48498 * 110.00092 * 301.31909 * 21 19 18 38 38 H 1.08001 * 122.53501 * 179.97438 * 22 18 17 39 39 H 1.09002 * 109.47070 * 60.00059 * 23 9 8 40 40 H 1.08996 * 109.46550 * 179.97438 * 23 9 8 41 41 H 1.09002 * 109.47103 * 299.99915 * 24 23 9 42 42 H 1.08998 * 109.46862 * 180.02562 * 24 23 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4521 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4033 2.2093 0.0005 5 6 3.5663 1.2749 0.0006 6 1 3.9564 0.7806 -0.8892 7 6 4.0002 2.7421 0.0011 8 6 5.5280 2.8222 0.0023 9 6 6.0741 2.1285 1.2520 10 1 7.1626 2.1852 1.2526 11 7 5.5493 2.7926 2.4477 12 16 6.4921 2.9241 3.8028 13 8 5.7212 3.6370 4.7603 14 8 7.0294 1.6310 4.0448 15 6 7.8561 3.9606 3.3906 16 6 9.0020 3.4797 2.9063 17 16 10.1209 4.8047 2.6137 18 6 8.9377 5.9709 3.1911 19 6 9.1525 7.4605 3.2687 20 8 9.1292 7.8745 4.6363 21 14 10.8024 7.8901 2.5179 22 6 7.8216 5.3351 3.5505 23 6 5.6403 0.6613 1.2514 24 6 4.1124 0.5812 1.2502 25 1 -0.3634 0.5139 0.8900 26 1 -0.3633 0.5138 -0.8899 27 1 -0.3633 -1.0277 -0.0005 28 1 3.6108 3.2364 -0.8889 29 1 3.6100 3.2360 0.8910 30 1 5.9185 2.3282 -0.8874 31 1 5.8371 3.8675 0.0023 32 1 4.6496 3.1551 2.4458 33 1 9.2102 2.4364 2.7202 34 1 8.3602 7.9708 2.7210 35 1 9.8089 7.4593 5.1845 36 1 11.0265 9.3564 2.5888 37 1 11.8885 7.1756 3.2356 38 1 6.9567 5.8535 3.9374 39 1 6.0307 0.1673 0.3617 40 1 6.0297 0.1671 2.1414 41 1 3.7220 1.0753 2.1399 42 1 3.8034 -0.4640 1.2503 There are 61 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 61 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_40_14474854_15065232.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 14:20:25 Heat of formation + Delta-G solvation = -160.594765 kcal Electronic energy + Delta-G solvation = -28946.484577 eV Core-core repulsion = 24725.822392 eV Total energy + Delta-G solvation = -4220.662185 eV No. of doubly occupied orbitals = 61 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 362.078 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -41.79580 -39.82631 -39.50159 -38.35359 -37.67855 -37.55347 -37.00553 -34.79723 -31.85681 -31.75093 -30.81964 -28.54342 -27.20206 -24.96514 -24.79521 -23.61617 -21.89546 -21.53037 -20.88833 -19.86957 -19.07152 -18.75434 -18.62139 -17.92461 -17.78132 -17.69811 -17.51445 -16.82779 -16.40908 -16.06134 -15.75478 -15.49602 -15.22441 -14.91090 -14.88801 -14.44752 -14.24038 -14.14048 -13.87316 -13.83266 -13.80855 -13.64417 -13.34359 -13.23021 -13.09538 -12.94586 -12.92062 -12.57319 -12.51920 -12.34676 -12.14910 -12.00119 -11.84679 -11.62646 -11.53364 -11.40751 -11.09053 -10.81904 -10.42170 -10.21201 -9.80193 -5.09587 -0.76265 -0.46293 0.36897 0.60829 0.96896 1.12934 1.19568 1.50128 1.75775 1.86167 2.08054 2.68693 3.20980 3.32838 3.53211 3.63037 3.67371 3.76676 3.92311 3.96587 4.11806 4.19406 4.21810 4.26180 4.27608 4.37127 4.43335 4.46437 4.47707 4.56304 4.65721 4.68590 4.85199 4.91887 4.92257 5.04656 5.13294 5.17998 5.23211 5.25999 5.39693 5.41980 5.48817 6.00600 6.34460 6.68078 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.363 6.363 3 C 0.458 3.542 4 O -0.542 6.542 5 C -0.075 4.075 6 H 0.137 0.863 7 C -0.107 4.107 8 C -0.115 4.115 9 C 0.144 3.856 10 H 0.110 0.890 11 N -1.101 6.101 12 S 2.720 3.280 13 O -0.997 6.997 14 O -0.974 6.974 15 C -0.692 4.692 16 C -0.085 4.085 17 S 0.195 5.805 18 C -0.233 4.233 19 C -0.046 4.046 20 O -0.543 6.543 21 Si 0.729 3.271 22 C -0.057 4.057 23 C -0.137 4.137 24 C -0.111 4.111 25 H 0.057 0.943 26 H 0.061 0.939 27 H 0.128 0.872 28 H 0.072 0.928 29 H 0.059 0.941 30 H 0.107 0.893 31 H 0.087 0.913 32 H 0.422 0.578 33 H 0.210 0.790 34 H 0.138 0.862 35 H 0.388 0.612 36 H -0.276 1.276 37 H -0.258 1.258 38 H 0.146 0.854 39 H 0.107 0.893 40 H 0.075 0.925 41 H 0.056 0.944 42 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.472 -2.959 -8.097 9.712 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.279 6.279 3 C 0.303 3.697 4 O -0.432 6.432 5 C -0.094 4.094 6 H 0.155 0.845 7 C -0.145 4.145 8 C -0.154 4.154 9 C 0.037 3.963 10 H 0.128 0.872 11 N -0.865 5.865 12 S 2.809 3.191 13 O -0.987 6.987 14 O -0.964 6.964 15 C -0.793 4.793 16 C -0.224 4.224 17 S 0.459 5.541 18 C -0.350 4.350 19 C -0.157 4.157 20 O -0.352 6.352 21 Si 0.631 3.369 22 C -0.086 4.086 23 C -0.175 4.175 24 C -0.149 4.149 25 H 0.076 0.924 26 H 0.079 0.921 27 H 0.146 0.854 28 H 0.090 0.910 29 H 0.078 0.922 30 H 0.125 0.875 31 H 0.106 0.894 32 H 0.260 0.740 33 H 0.227 0.773 34 H 0.155 0.845 35 H 0.237 0.763 36 H -0.201 1.201 37 H -0.184 1.184 38 H 0.163 0.837 39 H 0.125 0.875 40 H 0.093 0.907 41 H 0.074 0.926 42 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges 6.052 -2.310 -7.920 10.232 hybrid contribution -2.155 0.577 1.689 2.798 sum 3.897 -1.733 -6.232 7.551 Atomic orbital electron populations 1.23489 0.75365 1.05485 1.02256 1.86512 1.24490 1.33359 1.83581 1.24586 0.93377 0.80896 0.70884 1.90672 1.68258 1.37448 1.46792 1.21293 0.84533 1.00148 1.03406 0.84515 1.21457 0.97081 0.92859 1.03125 1.21835 0.93354 1.02650 0.97569 1.21140 0.99253 0.91821 0.84036 0.87227 1.55509 1.27848 1.72896 1.30211 1.00951 0.72782 0.72944 0.72400 1.93559 1.70317 1.75147 1.59679 1.93575 1.80421 1.38347 1.84017 1.29768 1.18687 1.09167 1.21689 1.26293 0.94682 1.05478 0.95944 1.84335 1.15628 0.95387 1.58784 1.25086 0.98488 1.00724 1.10743 1.24707 1.14613 0.89169 0.87213 1.86621 1.58992 1.69831 1.19723 0.94470 0.72832 0.80916 0.88713 1.19633 0.99453 0.91134 0.98356 1.22113 0.94319 0.96167 1.04948 1.21492 0.96958 1.01232 0.95183 0.92415 0.92063 0.85427 0.90954 0.92183 0.87504 0.89440 0.74008 0.77340 0.84490 0.76272 1.20131 1.18358 0.83667 0.87487 0.90662 0.92564 0.90011 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 -0.02 10.56 113.37 1.20 1.18 16 2 O -0.36 -0.90 10.47 -51.36 -0.54 -1.44 16 3 C 0.46 1.53 7.25 71.24 0.52 2.05 16 4 O -0.54 -5.41 15.73 21.96 0.35 -5.06 16 5 C -0.08 0.32 2.63 -11.54 -0.03 0.29 16 6 H 0.14 -1.24 8.14 -2.39 -0.02 -1.26 16 7 C -0.11 0.54 4.31 30.59 0.13 0.67 16 8 C -0.12 1.20 5.63 30.59 0.17 1.37 16 9 C 0.14 -1.21 2.98 44.99 0.13 -1.08 16 10 H 0.11 -1.37 7.38 -2.39 -0.02 -1.39 16 11 N -1.10 4.30 4.74 -169.39 -0.80 3.50 16 12 S 2.72 6.25 5.71 -56.49 -0.32 5.93 16 13 O -1.00 -10.79 17.63 -128.00 -2.26 -13.05 16 14 O -0.97 -5.89 16.90 -128.00 -2.16 -8.05 16 15 C -0.69 0.43 5.73 21.21 0.12 0.55 16 16 C -0.08 0.40 10.23 66.72 0.68 1.08 16 17 S 0.19 -1.02 20.60 -56.49 -1.16 -2.18 16 18 C -0.23 0.36 5.70 24.59 0.14 0.50 16 19 C -0.05 0.09 2.96 71.24 0.21 0.30 16 20 O -0.54 -1.19 12.88 -148.98 -1.92 -3.11 16 21 Si 0.73 -2.79 30.98 68.60 2.13 -0.67 16 22 C -0.06 -0.06 9.59 21.21 0.20 0.14 16 23 C -0.14 1.01 5.64 30.59 0.17 1.18 16 24 C -0.11 0.49 4.98 30.59 0.15 0.64 16 25 H 0.06 0.03 8.13 -2.39 -0.02 0.01 16 26 H 0.06 -0.01 8.13 -2.39 -0.02 -0.03 16 27 H 0.13 -0.79 8.14 -2.39 -0.02 -0.81 16 28 H 0.07 -0.24 8.10 -2.39 -0.02 -0.26 16 29 H 0.06 -0.13 6.46 -2.39 -0.02 -0.15 16 30 H 0.11 -1.53 8.14 -2.39 -0.02 -1.55 16 31 H 0.09 -0.96 8.14 -2.39 -0.02 -0.98 16 32 H 0.42 -1.80 6.81 -96.75 -0.66 -2.46 16 33 H 0.21 -2.09 8.00 -2.91 -0.02 -2.11 16 34 H 0.14 -0.55 7.96 -2.39 -0.02 -0.57 16 35 H 0.39 -1.33 8.70 -74.06 -0.64 -1.97 16 36 H -0.28 -0.87 7.11 99.48 0.71 -0.17 16 37 H -0.26 0.21 7.11 99.48 0.71 0.91 16 38 H 0.15 0.40 7.97 -2.91 -0.02 0.37 16 39 H 0.11 -1.29 8.14 -2.39 -0.02 -1.31 16 40 H 0.07 -0.30 7.64 -2.39 -0.02 -0.32 16 41 H 0.06 -0.09 7.45 -2.39 -0.02 -0.11 16 42 H 0.08 -0.35 8.11 -2.39 -0.02 -0.37 16 Total: 0.00 -26.69 369.58 -3.09 -29.78 By element: Atomic # 1 Polarization: -14.31 SS G_CDS: -0.20 Total: -14.51 kcal Atomic # 6 Polarization: 5.07 SS G_CDS: 3.80 Total: 8.87 kcal Atomic # 7 Polarization: 4.30 SS G_CDS: -0.80 Total: 3.50 kcal Atomic # 8 Polarization: -24.19 SS G_CDS: -6.53 Total: -30.72 kcal Atomic # 14 Polarization: -2.79 SS G_CDS: 2.13 Total: -0.67 kcal Atomic # 16 Polarization: 5.23 SS G_CDS: -1.49 Total: 3.74 kcal Total: -26.69 -3.09 -29.78 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_40_14474854_15065232.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -130.816 kcal (2) G-P(sol) polarization free energy of solvation -26.690 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -157.506 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.089 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -29.779 kcal (6) G-S(sol) free energy of system = (1) + (5) -160.595 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds