Wall clock time and date at job start Tue Mar 9 2021 14:26:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 C 1.53002 * 109.46800 * 2 1 4 4 C 1.52996 * 109.47219 * 120.00133 * 2 1 3 5 5 H 1.09000 * 109.46870 * 299.99985 * 4 2 1 6 6 C 1.53002 * 109.47346 * 59.99802 * 4 2 1 7 7 C 1.52996 * 109.46972 * 179.97438 * 6 4 2 8 8 C 1.52997 * 109.47165 * 300.00293 * 7 6 4 9 9 H 1.09000 * 109.47140 * 299.99954 * 8 7 6 10 10 N 1.46506 * 109.47277 * 180.02562 * 8 7 6 11 11 S 1.65603 * 119.99883 * 94.99569 * 10 8 7 12 12 O 1.42104 * 106.39910 * 178.54161 * 11 10 8 13 13 O 1.42100 * 106.40433 * 311.46443 * 11 10 8 14 14 C 1.76202 * 107.21625 * 65.00440 * 11 10 8 15 15 C 1.33380 * 122.53992 * 269.70600 * 14 11 10 16 16 S 1.75882 * 109.59733 * 179.90648 * 15 14 11 17 17 C 1.75885 * 90.96595 * 0.30213 * 16 15 14 18 18 C 1.50706 * 125.20203 * 179.79197 * 17 16 15 19 19 O 1.42903 * 109.46963 * 120.04351 * 18 17 16 20 20 Si 1.86298 * 109.47154 * 0.04405 * 18 17 16 21 21 C 1.33387 * 109.59506 * 359.83076 * 17 16 15 22 22 C 1.52999 * 109.47592 * 60.00300 * 8 7 6 23 23 C 1.52997 * 109.46975 * 180.02562 * 4 2 1 24 24 H 1.09000 * 109.47188 * 300.00076 * 1 2 3 25 25 H 1.09002 * 109.47288 * 60.00162 * 1 2 3 26 26 H 1.09001 * 109.46630 * 179.97438 * 1 2 3 27 27 H 1.09004 * 109.46943 * 240.00383 * 2 1 3 28 28 H 1.09004 * 109.46930 * 180.02562 * 3 2 1 29 29 H 1.09002 * 109.47067 * 299.99973 * 3 2 1 30 30 H 1.09000 * 109.47312 * 60.00000 * 3 2 1 31 31 H 1.08992 * 109.46974 * 300.00318 * 6 4 2 32 32 H 1.08996 * 109.46550 * 60.00424 * 6 4 2 33 33 H 1.09000 * 109.47054 * 60.00300 * 7 6 4 34 34 H 1.09001 * 109.46997 * 180.02562 * 7 6 4 35 35 H 0.97001 * 120.00001 * 275.00161 * 10 8 7 36 36 H 1.08006 * 125.20484 * 0.02661 * 15 14 11 37 37 H 1.08995 * 109.47299 * 240.03895 * 18 17 16 38 38 H 0.96706 * 113.99955 * 300.00063 * 19 18 17 39 39 H 1.48496 * 110.00115 * 58.68169 * 20 18 17 40 40 H 1.48502 * 109.99990 * 179.97438 * 20 18 17 41 41 H 1.08009 * 122.53818 * 179.97438 * 21 17 16 42 42 H 1.08993 * 109.47839 * 180.02562 * 22 8 7 43 43 H 1.09000 * 109.47160 * 59.99666 * 22 8 7 44 44 H 1.09001 * 109.46922 * 59.99912 * 23 4 2 45 45 H 1.09000 * 109.47140 * 299.99612 * 23 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0401 -0.7213 1.2492 5 1 1.6767 -0.2074 2.1392 6 6 1.5301 -2.1638 1.2492 7 6 2.0407 -2.8851 2.4981 8 6 3.5706 -2.8851 2.4975 9 1 3.9336 -3.3988 1.6073 10 7 4.0596 -3.5763 3.6930 11 16 4.4534 -5.1831 3.6176 12 8 4.9195 -5.5431 4.9108 13 8 3.3656 -5.8331 2.9746 14 6 5.8335 -5.3314 2.5322 15 6 5.6965 -5.5279 1.2201 16 16 7.2840 -5.6217 0.4687 17 6 8.0677 -5.3909 2.0263 18 6 9.5572 -5.3498 2.2517 19 8 9.9190 -4.0873 2.8151 20 14 10.4379 -5.5798 0.6262 21 6 7.1421 -5.2587 2.9776 22 6 4.0807 -1.4426 2.4975 23 6 3.5701 -0.7207 1.2495 24 1 -0.3633 0.5138 0.8900 25 1 -0.3634 0.5138 -0.8900 26 1 -0.3632 -1.0277 -0.0005 27 1 1.8934 -0.5138 -0.8901 28 1 3.1301 1.4426 -0.0005 29 1 1.6766 1.9564 -0.8900 30 1 1.6767 1.9564 0.8900 31 1 0.4402 -2.1637 1.2492 32 1 1.8935 -2.6775 0.3593 33 1 1.6777 -2.3714 3.3883 34 1 1.6777 -3.9129 2.4979 35 1 4.1526 -3.0929 4.5288 36 1 4.7547 -5.6140 0.6984 37 1 9.8433 -6.1483 2.9362 38 1 9.6936 -3.3292 2.2586 39 1 10.0321 -4.5154 -0.3263 40 1 11.9077 -5.5406 0.8349 41 1 7.3946 -5.1068 4.0167 42 1 5.1706 -1.4425 2.4965 43 1 3.7177 -0.9289 3.3877 44 1 3.9330 0.3072 1.2497 45 1 3.9338 -1.2343 0.3595 There are 59 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 59 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_40_14589130_15065232.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 14:26:33 Heat of formation + Delta-G solvation = -94.377168 kcal Electronic energy + Delta-G solvation = -27166.674760 eV Core-core repulsion = 23403.399272 eV Total energy + Delta-G solvation = -3763.275488 eV No. of doubly occupied orbitals = 59 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 346.111 amu Computer time = 1.64 seconds Orbital eigenvalues (eV) -40.50533 -39.56930 -38.21912 -37.70545 -37.14068 -36.82809 -33.82115 -32.01370 -31.89833 -29.10947 -28.11497 -27.28667 -24.96129 -23.90968 -23.51586 -21.62538 -21.25432 -20.80878 -20.09342 -19.21106 -18.52432 -18.00979 -17.71494 -17.49084 -16.48326 -16.39258 -15.84623 -15.58575 -15.41106 -15.32627 -14.97930 -14.76581 -14.58536 -14.50418 -14.26869 -14.20238 -13.87582 -13.56833 -13.48491 -13.22635 -13.15052 -13.01553 -12.90754 -12.88846 -12.56481 -12.49505 -12.38159 -12.37025 -12.20902 -12.11820 -11.73386 -11.64155 -11.43115 -11.24934 -11.04652 -10.89016 -10.46972 -10.26886 -9.89174 -5.20842 -0.75419 -0.51877 0.26612 0.52757 0.96359 1.08872 1.40950 1.76938 2.02106 2.72415 3.12448 3.29663 3.49505 3.54048 3.59168 3.63636 3.76406 3.87761 3.99495 4.05534 4.12456 4.19906 4.26261 4.29951 4.36968 4.45083 4.51351 4.55911 4.58319 4.64217 4.71685 4.72235 4.85631 4.89694 4.92223 4.99685 5.02640 5.03121 5.07703 5.12195 5.13295 5.21206 5.29617 5.35498 5.44993 5.52163 5.86753 6.17752 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.092 4.092 3 C -0.151 4.151 4 C -0.085 4.085 5 H 0.073 0.927 6 C -0.115 4.115 7 C -0.140 4.140 8 C 0.155 3.845 9 H 0.081 0.919 10 N -1.111 6.111 11 S 2.706 3.294 12 O -0.952 6.952 13 O -0.950 6.950 14 C -0.685 4.685 15 C -0.088 4.088 16 S 0.160 5.840 17 C -0.227 4.227 18 C -0.034 4.034 19 O -0.521 6.521 20 Si 0.652 3.348 21 C -0.042 4.042 22 C -0.125 4.125 23 C -0.115 4.115 24 H 0.054 0.946 25 H 0.053 0.947 26 H 0.058 0.942 27 H 0.069 0.931 28 H 0.057 0.943 29 H 0.053 0.947 30 H 0.054 0.946 31 H 0.072 0.928 32 H 0.064 0.936 33 H 0.070 0.930 34 H 0.080 0.920 35 H 0.420 0.580 36 H 0.185 0.815 37 H 0.130 0.870 38 H 0.377 0.623 39 H -0.240 1.240 40 H -0.232 1.232 41 H 0.157 0.843 42 H 0.069 0.931 43 H 0.072 0.928 44 H 0.072 0.928 45 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.203 2.592 -4.249 4.981 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.111 4.111 3 C -0.208 4.208 4 C -0.104 4.104 5 H 0.091 0.909 6 C -0.153 4.153 7 C -0.179 4.179 8 C 0.049 3.951 9 H 0.099 0.901 10 N -0.870 5.870 11 S 2.793 3.207 12 O -0.943 6.943 13 O -0.940 6.940 14 C -0.785 4.785 15 C -0.227 4.227 16 S 0.424 5.576 17 C -0.345 4.345 18 C -0.146 4.146 19 O -0.327 6.327 20 Si 0.551 3.449 21 C -0.071 4.071 22 C -0.164 4.164 23 C -0.153 4.153 24 H 0.073 0.927 25 H 0.072 0.928 26 H 0.077 0.923 27 H 0.087 0.913 28 H 0.076 0.924 29 H 0.072 0.928 30 H 0.073 0.927 31 H 0.091 0.909 32 H 0.083 0.917 33 H 0.089 0.911 34 H 0.098 0.902 35 H 0.255 0.745 36 H 0.203 0.797 37 H 0.148 0.852 38 H 0.225 0.775 39 H -0.164 1.164 40 H -0.155 1.155 41 H 0.175 0.825 42 H 0.088 0.912 43 H 0.091 0.909 44 H 0.090 0.910 45 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 1.117 1.558 -5.590 5.909 hybrid contribution -0.172 1.715 1.566 2.329 sum 0.944 3.272 -4.023 5.271 Atomic orbital electron populations 1.21915 0.95178 1.01965 1.01802 1.21142 0.95844 0.96128 0.97952 1.21914 1.01104 0.95977 1.01827 1.21274 0.94940 0.95808 0.98366 0.90907 1.21640 1.01175 0.94872 0.97659 1.22105 0.94327 1.02314 0.99129 1.20839 0.94578 0.93877 0.85851 0.90111 1.55652 1.81367 1.30827 1.19203 1.01706 0.73360 0.72384 0.73262 1.93616 1.82018 1.81214 1.37414 1.93612 1.50401 1.72617 1.77362 1.30066 1.17513 1.21175 1.09734 1.25939 1.03101 0.97416 0.96265 1.84385 0.97092 1.67062 1.09071 1.25016 1.00575 1.12812 0.96057 1.24426 0.90447 0.89432 1.10344 1.86653 1.83527 1.14861 1.47698 0.95215 0.83304 0.90550 0.75875 1.19603 0.88759 0.97510 1.01223 1.21840 1.00942 0.94090 0.99525 1.21634 0.95459 1.00835 0.97412 0.92692 0.92782 0.92279 0.91254 0.92439 0.92774 0.92694 0.90927 0.91716 0.91088 0.90181 0.74461 0.79747 0.85200 0.77483 1.16373 1.15529 0.82549 0.91208 0.90928 0.90976 0.91744 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 30. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 0.22 8.84 37.16 0.33 0.55 16 2 C -0.09 0.17 2.51 -90.62 -0.23 -0.06 16 3 C -0.15 0.25 8.84 37.16 0.33 0.58 16 4 C -0.09 0.18 1.78 -90.62 -0.16 0.02 16 5 H 0.07 -0.12 8.14 -51.93 -0.42 -0.54 16 6 C -0.12 0.21 4.85 -26.73 -0.13 0.08 16 7 C -0.14 0.17 5.53 -26.73 -0.15 0.02 16 8 C 0.16 -0.29 2.65 -67.93 -0.18 -0.47 16 9 H 0.08 -0.21 7.37 -51.93 -0.38 -0.59 16 10 N -1.11 1.58 5.47 -4.89 -0.03 1.55 16 11 S 2.71 3.62 5.71 -107.50 -0.61 3.01 16 12 O -0.95 -4.34 17.63 -57.17 -1.01 -5.34 16 13 O -0.95 -3.46 16.89 -57.17 -0.97 -4.43 16 14 C -0.69 -0.26 5.73 -41.21 -0.24 -0.49 16 15 C -0.09 0.08 10.22 29.03 0.30 0.37 16 16 S 0.16 -0.23 20.58 -107.50 -2.21 -2.44 16 17 C -0.23 0.07 5.72 -36.00 -0.21 -0.14 16 18 C -0.03 0.03 2.96 36.01 0.11 0.14 16 19 O -0.52 -0.13 12.86 -35.23 -0.45 -0.58 16 20 Si 0.65 -1.01 30.97 -169.99 -5.26 -6.28 16 21 C -0.04 -0.03 9.56 -41.21 -0.39 -0.42 16 22 C -0.12 0.34 5.45 -26.76 -0.15 0.19 16 23 C -0.12 0.30 4.85 -26.76 -0.13 0.17 16 24 H 0.05 -0.07 8.14 -51.93 -0.42 -0.49 16 25 H 0.05 -0.07 8.14 -51.93 -0.42 -0.49 16 26 H 0.06 -0.09 6.43 -51.93 -0.33 -0.43 16 27 H 0.07 -0.11 8.14 -51.93 -0.42 -0.53 16 28 H 0.06 -0.11 6.43 -51.93 -0.33 -0.45 16 29 H 0.05 -0.07 8.14 -51.93 -0.42 -0.50 16 30 H 0.05 -0.08 8.14 -51.93 -0.42 -0.50 16 31 H 0.07 -0.12 6.43 -51.93 -0.33 -0.45 16 32 H 0.06 -0.13 8.14 -51.93 -0.42 -0.55 16 33 H 0.07 -0.10 8.14 -51.93 -0.42 -0.52 16 34 H 0.08 0.02 7.64 -51.93 -0.40 -0.38 16 35 H 0.42 -1.23 8.84 -34.47 -0.30 -1.54 16 36 H 0.19 -0.53 8.00 -52.48 -0.42 -0.95 16 37 H 0.13 -0.20 7.96 -51.93 -0.41 -0.61 16 38 H 0.38 -1.05 8.70 45.56 0.40 -0.65 16 39 H -0.24 0.02 7.11 56.52 0.40 0.42 16 40 H -0.23 -0.28 7.11 56.52 0.40 0.12 16 41 H 0.16 0.12 7.97 -52.48 -0.42 -0.30 16 42 H 0.07 -0.20 8.14 -51.93 -0.42 -0.62 16 43 H 0.07 -0.20 8.14 -51.93 -0.42 -0.63 16 44 H 0.07 -0.19 6.43 -51.93 -0.33 -0.52 16 45 H 0.06 -0.17 8.14 -51.93 -0.42 -0.59 16 LS Contribution 375.57 15.07 5.66 5.66 Total: 0.00 -7.71 375.57 -12.90 -20.61 By element: Atomic # 1 Polarization: -5.17 SS G_CDS: -7.12 Total: -12.30 kcal Atomic # 6 Polarization: 1.43 SS G_CDS: -0.90 Total: 0.54 kcal Atomic # 7 Polarization: 1.58 SS G_CDS: -0.03 Total: 1.55 kcal Atomic # 8 Polarization: -7.92 SS G_CDS: -2.43 Total: -10.35 kcal Atomic # 14 Polarization: -1.01 SS G_CDS: -5.26 Total: -6.28 kcal Atomic # 16 Polarization: 3.39 SS G_CDS: -2.83 Total: 0.57 kcal Total LS contribution 5.66 Total: 5.66 kcal Total: -7.71 -12.90 -20.61 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_40_14589130_15065232.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -73.767 kcal (2) G-P(sol) polarization free energy of solvation -7.707 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.474 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.903 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -20.610 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.377 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.64 seconds