Wall clock time and date at job start Tue Mar 9 2021 14:26:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 C 1.53002 * 109.46800 * 2 1 4 4 C 1.52996 * 109.47219 * 120.00133 * 2 1 3 5 5 H 1.09000 * 109.46870 * 299.99985 * 4 2 1 6 6 C 1.53002 * 109.47346 * 59.99802 * 4 2 1 7 7 C 1.52996 * 109.46972 * 179.97438 * 6 4 2 8 8 C 1.52997 * 109.47165 * 300.00293 * 7 6 4 9 9 H 1.09000 * 109.47140 * 299.99954 * 8 7 6 10 10 N 1.46506 * 109.47277 * 180.02562 * 8 7 6 11 11 S 1.65603 * 119.99883 * 94.99569 * 10 8 7 12 12 O 1.42104 * 106.39910 * 178.54161 * 11 10 8 13 13 O 1.42100 * 106.40433 * 311.46443 * 11 10 8 14 14 C 1.76202 * 107.21625 * 65.00440 * 11 10 8 15 15 C 1.33380 * 122.53992 * 269.70600 * 14 11 10 16 16 S 1.75882 * 109.59733 * 179.90648 * 15 14 11 17 17 C 1.75885 * 90.96595 * 0.30213 * 16 15 14 18 18 C 1.50706 * 125.20203 * 179.79197 * 17 16 15 19 19 O 1.42903 * 109.46963 * 120.04351 * 18 17 16 20 20 Si 1.86298 * 109.47154 * 0.04405 * 18 17 16 21 21 C 1.33387 * 109.59506 * 359.83076 * 17 16 15 22 22 C 1.52999 * 109.47592 * 60.00300 * 8 7 6 23 23 C 1.52997 * 109.46975 * 180.02562 * 4 2 1 24 24 H 1.09000 * 109.47188 * 300.00076 * 1 2 3 25 25 H 1.09002 * 109.47288 * 60.00162 * 1 2 3 26 26 H 1.09001 * 109.46630 * 179.97438 * 1 2 3 27 27 H 1.09004 * 109.46943 * 240.00383 * 2 1 3 28 28 H 1.09004 * 109.46930 * 180.02562 * 3 2 1 29 29 H 1.09002 * 109.47067 * 299.99973 * 3 2 1 30 30 H 1.09000 * 109.47312 * 60.00000 * 3 2 1 31 31 H 1.08992 * 109.46974 * 300.00318 * 6 4 2 32 32 H 1.08996 * 109.46550 * 60.00424 * 6 4 2 33 33 H 1.09000 * 109.47054 * 60.00300 * 7 6 4 34 34 H 1.09001 * 109.46997 * 180.02562 * 7 6 4 35 35 H 0.97001 * 120.00001 * 275.00161 * 10 8 7 36 36 H 1.08006 * 125.20484 * 0.02661 * 15 14 11 37 37 H 1.08995 * 109.47299 * 240.03895 * 18 17 16 38 38 H 0.96706 * 113.99955 * 300.00063 * 19 18 17 39 39 H 1.48496 * 110.00115 * 58.68169 * 20 18 17 40 40 H 1.48502 * 109.99990 * 179.97438 * 20 18 17 41 41 H 1.08009 * 122.53818 * 179.97438 * 21 17 16 42 42 H 1.08993 * 109.47839 * 180.02562 * 22 8 7 43 43 H 1.09000 * 109.47160 * 59.99666 * 22 8 7 44 44 H 1.09001 * 109.46922 * 59.99912 * 23 4 2 45 45 H 1.09000 * 109.47140 * 299.99612 * 23 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0401 -0.7213 1.2492 5 1 1.6767 -0.2074 2.1392 6 6 1.5301 -2.1638 1.2492 7 6 2.0407 -2.8851 2.4981 8 6 3.5706 -2.8851 2.4975 9 1 3.9336 -3.3988 1.6073 10 7 4.0596 -3.5763 3.6930 11 16 4.4534 -5.1831 3.6176 12 8 4.9195 -5.5431 4.9108 13 8 3.3656 -5.8331 2.9746 14 6 5.8335 -5.3314 2.5322 15 6 5.6965 -5.5279 1.2201 16 16 7.2840 -5.6217 0.4687 17 6 8.0677 -5.3909 2.0263 18 6 9.5572 -5.3498 2.2517 19 8 9.9190 -4.0873 2.8151 20 14 10.4379 -5.5798 0.6262 21 6 7.1421 -5.2587 2.9776 22 6 4.0807 -1.4426 2.4975 23 6 3.5701 -0.7207 1.2495 24 1 -0.3633 0.5138 0.8900 25 1 -0.3634 0.5138 -0.8900 26 1 -0.3632 -1.0277 -0.0005 27 1 1.8934 -0.5138 -0.8901 28 1 3.1301 1.4426 -0.0005 29 1 1.6766 1.9564 -0.8900 30 1 1.6767 1.9564 0.8900 31 1 0.4402 -2.1637 1.2492 32 1 1.8935 -2.6775 0.3593 33 1 1.6777 -2.3714 3.3883 34 1 1.6777 -3.9129 2.4979 35 1 4.1526 -3.0929 4.5288 36 1 4.7547 -5.6140 0.6984 37 1 9.8433 -6.1483 2.9362 38 1 9.6936 -3.3292 2.2586 39 1 10.0321 -4.5154 -0.3263 40 1 11.9077 -5.5406 0.8349 41 1 7.3946 -5.1068 4.0167 42 1 5.1706 -1.4425 2.4965 43 1 3.7177 -0.9289 3.3877 44 1 3.9330 0.3072 1.2497 45 1 3.9338 -1.2343 0.3595 There are 59 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 59 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_40_14589130_15065232.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 14:26:32 Heat of formation + Delta-G solvation = -93.076552 kcal Electronic energy + Delta-G solvation = -27166.618361 eV Core-core repulsion = 23403.399272 eV Total energy + Delta-G solvation = -3763.219089 eV No. of doubly occupied orbitals = 59 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 346.111 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -40.36361 -39.53587 -38.41470 -37.67502 -37.06220 -37.01750 -33.72182 -31.87881 -31.83403 -28.98984 -27.98734 -27.23898 -24.94424 -23.77932 -23.35640 -21.58598 -21.15868 -20.67694 -20.10046 -19.16500 -18.59016 -17.98974 -17.70581 -17.44853 -16.42517 -16.35833 -15.83129 -15.57733 -15.30298 -15.17552 -14.94031 -14.64909 -14.46338 -14.39630 -14.23346 -14.16741 -13.86377 -13.59111 -13.38717 -13.35265 -13.23958 -13.07913 -12.95696 -12.76972 -12.51431 -12.46873 -12.35850 -12.24330 -12.07466 -11.95817 -11.62379 -11.58890 -11.27461 -11.11710 -10.92393 -10.83419 -10.36513 -10.21560 -9.82166 -5.10159 -0.80361 -0.49366 0.33223 0.57735 0.96012 1.16653 1.48509 1.83755 2.01641 2.64671 3.18878 3.31573 3.59357 3.65576 3.72485 3.77314 3.88325 4.03150 4.12185 4.16910 4.23556 4.30515 4.38657 4.45536 4.46324 4.61426 4.62810 4.66200 4.71019 4.75713 4.84272 4.86818 4.89173 5.02468 5.04703 5.06794 5.15857 5.17941 5.24949 5.26496 5.27196 5.34924 5.42041 5.49350 5.59792 5.67362 6.01189 6.36650 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.090 4.090 3 C -0.150 4.150 4 C -0.081 4.081 5 H 0.068 0.932 6 C -0.113 4.113 7 C -0.140 4.140 8 C 0.152 3.848 9 H 0.090 0.910 10 N -1.102 6.102 11 S 2.721 3.279 12 O -0.990 6.990 13 O -0.977 6.977 14 C -0.692 4.692 15 C -0.090 4.090 16 S 0.197 5.803 17 C -0.231 4.231 18 C -0.043 4.043 19 O -0.539 6.539 20 Si 0.721 3.279 21 C -0.057 4.057 22 C -0.121 4.121 23 C -0.114 4.114 24 H 0.051 0.949 25 H 0.050 0.950 26 H 0.059 0.941 27 H 0.070 0.930 28 H 0.062 0.938 29 H 0.050 0.950 30 H 0.051 0.949 31 H 0.069 0.931 32 H 0.068 0.932 33 H 0.070 0.930 34 H 0.064 0.936 35 H 0.427 0.573 36 H 0.204 0.796 37 H 0.134 0.866 38 H 0.389 0.611 39 H -0.254 1.254 40 H -0.273 1.273 41 H 0.149 0.851 42 H 0.075 0.925 43 H 0.074 0.926 44 H 0.075 0.925 45 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.496 2.944 -5.405 6.175 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.109 4.109 3 C -0.208 4.208 4 C -0.099 4.099 5 H 0.087 0.913 6 C -0.152 4.152 7 C -0.180 4.180 8 C 0.045 3.955 9 H 0.108 0.892 10 N -0.863 5.863 11 S 2.809 3.191 12 O -0.981 6.981 13 O -0.967 6.967 14 C -0.793 4.793 15 C -0.229 4.229 16 S 0.461 5.539 17 C -0.349 4.349 18 C -0.154 4.154 19 O -0.347 6.347 20 Si 0.622 3.378 21 C -0.086 4.086 22 C -0.160 4.160 23 C -0.152 4.152 24 H 0.070 0.930 25 H 0.070 0.930 26 H 0.078 0.922 27 H 0.088 0.912 28 H 0.081 0.919 29 H 0.069 0.931 30 H 0.070 0.930 31 H 0.088 0.912 32 H 0.087 0.913 33 H 0.089 0.911 34 H 0.083 0.917 35 H 0.264 0.736 36 H 0.221 0.779 37 H 0.152 0.848 38 H 0.239 0.761 39 H -0.179 1.179 40 H -0.198 1.198 41 H 0.166 0.834 42 H 0.094 0.906 43 H 0.093 0.907 44 H 0.093 0.907 45 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 1.373 1.916 -6.722 7.123 hybrid contribution -0.229 1.640 1.884 2.508 sum 1.144 3.556 -4.837 6.112 Atomic orbital electron populations 1.21921 0.95562 1.01929 1.01516 1.21123 0.95510 0.96134 0.98110 1.21909 1.01425 0.95920 1.01515 1.21217 0.95385 0.95347 0.97984 0.91346 1.21622 1.01027 0.95077 0.97431 1.22095 0.94881 1.01436 0.99544 1.20978 0.94136 0.94545 0.85828 0.89159 1.55408 1.81144 1.29821 1.19953 1.00942 0.73043 0.72671 0.72396 1.93561 1.82592 1.82289 1.39617 1.93575 1.51699 1.73770 1.77616 1.29782 1.16735 1.22790 1.10024 1.26261 1.04428 0.96230 0.95984 1.84262 0.96044 1.65991 1.07557 1.25125 1.00690 1.12370 0.96740 1.24646 0.90325 0.89296 1.11162 1.86621 1.83697 1.15690 1.48716 0.94419 0.79937 0.89232 0.74197 1.19623 0.89208 0.98542 1.01253 1.21813 1.01252 0.93252 0.99670 1.21627 0.94899 1.01073 0.97566 0.92998 0.93040 0.92203 0.91175 0.91920 0.93111 0.92983 0.91221 0.91328 0.91083 0.91733 0.73562 0.77920 0.84822 0.76146 1.17855 1.19837 0.83350 0.90621 0.90723 0.90667 0.91269 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 0.43 8.84 71.98 0.64 1.07 16 2 C -0.09 0.35 2.51 -10.79 -0.03 0.33 16 3 C -0.15 0.55 8.84 71.98 0.64 1.19 16 4 C -0.08 0.38 1.78 -10.80 -0.02 0.36 16 5 H 0.07 -0.24 8.14 -2.39 -0.02 -0.26 16 6 C -0.11 0.43 4.85 30.59 0.15 0.58 16 7 C -0.14 0.30 5.53 30.59 0.17 0.47 16 8 C 0.15 -0.61 2.65 44.99 0.12 -0.49 16 9 H 0.09 -0.54 7.37 -2.39 -0.02 -0.55 16 10 N -1.10 2.68 5.47 -169.38 -0.93 1.75 16 11 S 2.72 9.75 5.71 -56.49 -0.32 9.43 16 12 O -0.99 -10.60 17.63 -128.00 -2.26 -12.85 16 13 O -0.98 -7.97 16.89 -128.00 -2.16 -10.14 16 14 C -0.69 -0.59 5.73 21.21 0.12 -0.47 16 15 C -0.09 0.24 10.22 66.72 0.68 0.92 16 16 S 0.20 -0.81 20.58 -56.49 -1.16 -1.98 16 17 C -0.23 0.23 5.72 24.59 0.14 0.37 16 18 C -0.04 0.08 2.96 71.24 0.21 0.29 16 19 O -0.54 -0.29 12.86 -148.98 -1.92 -2.21 16 20 Si 0.72 -2.56 30.97 68.60 2.12 -0.44 16 21 C -0.06 -0.10 9.56 21.21 0.20 0.10 16 22 C -0.12 0.75 5.45 30.58 0.17 0.92 16 23 C -0.11 0.71 4.85 30.58 0.15 0.85 16 24 H 0.05 -0.11 8.14 -2.39 -0.02 -0.13 16 25 H 0.05 -0.12 8.14 -2.39 -0.02 -0.14 16 26 H 0.06 -0.18 6.43 -2.39 -0.02 -0.19 16 27 H 0.07 -0.27 8.14 -2.39 -0.02 -0.29 16 28 H 0.06 -0.29 6.43 -2.38 -0.02 -0.31 16 29 H 0.05 -0.14 8.14 -2.39 -0.02 -0.16 16 30 H 0.05 -0.15 8.14 -2.39 -0.02 -0.17 16 31 H 0.07 -0.22 6.43 -2.39 -0.02 -0.23 16 32 H 0.07 -0.30 8.14 -2.39 -0.02 -0.32 16 33 H 0.07 -0.17 8.14 -2.39 -0.02 -0.19 16 34 H 0.06 0.08 7.64 -2.39 -0.02 0.06 16 35 H 0.43 -2.29 8.84 -96.74 -0.85 -3.15 16 36 H 0.20 -1.41 8.00 -2.91 -0.02 -1.44 16 37 H 0.13 -0.40 7.96 -2.39 -0.02 -0.42 16 38 H 0.39 -2.24 8.70 -74.05 -0.64 -2.88 16 39 H -0.25 0.32 7.11 99.48 0.71 1.03 16 40 H -0.27 -0.86 7.11 99.48 0.71 -0.15 16 41 H 0.15 0.42 7.97 -2.91 -0.02 0.39 16 42 H 0.08 -0.52 8.14 -2.39 -0.02 -0.54 16 43 H 0.07 -0.47 8.14 -2.39 -0.02 -0.49 16 44 H 0.07 -0.48 6.43 -2.39 -0.02 -0.49 16 45 H 0.07 -0.47 8.14 -2.39 -0.02 -0.49 16 Total: 0.00 -17.72 375.57 -3.75 -21.47 By element: Atomic # 1 Polarization: -11.06 SS G_CDS: -0.46 Total: -11.52 kcal Atomic # 6 Polarization: 3.15 SS G_CDS: 3.34 Total: 6.48 kcal Atomic # 7 Polarization: 2.68 SS G_CDS: -0.93 Total: 1.75 kcal Atomic # 8 Polarization: -18.86 SS G_CDS: -6.34 Total: -25.20 kcal Atomic # 14 Polarization: -2.56 SS G_CDS: 2.12 Total: -0.44 kcal Atomic # 16 Polarization: 8.94 SS G_CDS: -1.49 Total: 7.46 kcal Total: -17.72 -3.75 -21.47 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_40_14589130_15065232.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -71.610 kcal (2) G-P(sol) polarization free energy of solvation -17.719 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.329 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.748 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -21.466 kcal (6) G-S(sol) free energy of system = (1) + (5) -93.077 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds