Wall clock time and date at job start Tue Mar 9 2021 14:27:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42903 * 1 3 3 Si 1.86293 * 109.47041 * 2 1 4 4 C 1.50699 * 109.47152 * 239.99653 * 2 1 3 5 5 C 1.33388 * 125.20187 * 299.71804 * 4 2 1 6 6 C 1.38427 * 114.91959 * 179.86174 * 5 4 2 7 7 S 1.76202 * 122.54081 * 180.20079 * 6 5 4 8 8 O 1.42106 * 106.39822 * 23.81586 * 7 6 5 9 9 O 1.42098 * 106.39986 * 156.73112 * 7 6 5 10 10 N 1.65592 * 107.22075 * 270.27518 * 7 6 5 11 11 C 1.46503 * 120.00163 * 64.99791 * 10 7 6 12 12 H 1.08994 * 112.84662 * 15.33480 * 11 10 7 13 13 C 1.53776 * 113.61184 * 146.53183 * 11 10 7 14 14 C 1.53777 * 87.08277 * 139.98166 * 13 11 10 15 15 H 1.08998 * 113.61915 * 89.11160 * 14 13 11 16 16 C 1.52996 * 113.61876 * 220.01730 * 14 13 11 17 17 N 1.46498 * 109.47672 * 184.99725 * 16 14 13 18 18 C 1.34428 * 126.82652 * 124.99848 * 17 16 14 19 19 N 1.30826 * 108.07792 * 179.97438 * 18 17 16 20 20 C 1.33241 * 109.83441 * 0.02562 * 19 18 17 21 21 N 1.30719 * 108.94065 * 359.75353 * 20 19 18 22 22 C 1.53785 * 113.61215 * 244.13950 * 11 10 7 23 23 C 1.33391 * 114.92028 * 0.43167 * 6 5 4 24 24 S 1.75876 * 125.20367 * 120.02937 * 4 2 1 25 25 H 0.96700 * 114.00311 * 300.00531 * 1 2 3 26 26 H 1.09008 * 109.46477 * 119.99697 * 2 1 3 27 27 H 1.48501 * 109.99918 * 178.67685 * 3 2 1 28 28 H 1.48506 * 109.99973 * 299.99283 * 3 2 1 29 29 H 1.08004 * 122.54341 * 0.02562 * 5 4 2 30 30 H 0.97000 * 119.99862 * 245.00463 * 10 7 6 31 31 H 1.09001 * 113.61622 * 254.52577 * 13 11 10 32 32 H 1.08996 * 113.62083 * 25.34692 * 13 11 10 33 33 H 1.09001 * 109.47275 * 305.00288 * 16 14 13 34 34 H 1.09010 * 109.47055 * 64.99835 * 16 14 13 35 35 H 1.07998 * 125.95804 * 359.93014 * 18 17 16 36 36 H 1.07997 * 125.52970 * 179.97438 * 20 19 18 37 37 H 1.08998 * 113.61310 * 334.56134 * 22 11 10 38 38 H 1.08994 * 113.61276 * 105.47560 * 22 11 10 39 39 H 1.07997 * 125.20518 * 179.79102 * 23 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0500 1.7564 0.0000 4 6 1.9314 -0.7105 -1.2304 5 6 1.6783 -1.9828 -1.5408 6 6 2.2453 -2.4178 -2.7264 7 16 2.0358 -4.0596 -3.3308 8 8 0.8368 -4.5517 -2.7480 9 8 2.2507 -4.0009 -4.7342 10 7 3.2681 -4.9728 -2.7067 11 6 3.3533 -5.1987 -1.2617 12 1 2.4290 -4.9518 -0.7396 13 6 3.9238 -6.5765 -0.8863 14 6 4.6905 -5.8645 0.2407 15 1 4.1326 -5.7990 1.1747 16 6 6.1169 -6.3829 0.4343 17 7 6.7198 -5.7308 1.5993 18 6 7.2672 -6.3356 2.6678 19 7 7.6932 -5.4076 3.4856 20 6 7.4361 -4.2035 2.9764 21 7 6.8450 -4.3494 1.8196 22 6 4.6079 -4.5877 -0.6156 23 6 2.9663 -1.5014 -3.3741 24 16 2.9474 0.0089 -2.4728 25 1 -0.3934 0.4418 0.7650 26 1 1.7923 -0.5138 0.8901 27 1 3.5346 1.7702 0.0322 28 1 1.5616 2.4678 -1.2086 29 1 1.0744 -2.6242 -0.9160 30 1 3.9337 -5.3580 -3.2979 31 1 3.1708 -7.2777 -0.5267 32 1 4.5698 -7.0052 -1.6524 33 1 6.0932 -7.4611 0.5931 34 1 6.7084 -6.1595 -0.4537 35 1 7.3417 -7.4016 2.8241 36 1 7.6801 -3.2600 3.4419 37 1 5.4424 -4.4711 -1.3071 38 1 4.4063 -3.6857 -0.0379 39 1 3.4824 -1.6620 -4.3090 There are 59 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 59 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_40_14644090_15065232.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 14:27:22 Heat of formation + Delta-G solvation = 60.293534 kcal Electronic energy + Delta-G solvation = -27250.504278 eV Core-core repulsion = 23224.054899 eV Total energy + Delta-G solvation = -4026.449379 eV No. of doubly occupied orbitals = 59 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 357.065 amu Computer time = 1.43 seconds Orbital eigenvalues (eV) -43.02196 -40.62979 -39.43005 -38.23306 -37.60275 -36.87216 -35.66249 -33.71269 -32.16050 -32.01213 -29.03520 -27.26981 -26.94596 -24.88987 -24.50417 -22.92972 -22.47290 -21.32302 -21.09914 -20.16566 -19.12541 -18.52137 -18.49324 -18.44888 -17.83118 -17.29447 -16.88319 -16.43259 -16.29044 -15.93905 -15.74829 -15.47829 -15.22799 -14.86085 -14.48989 -14.31501 -14.23914 -14.12419 -14.03625 -13.77635 -13.64862 -13.49610 -13.14157 -13.04467 -12.91202 -12.89260 -12.61549 -12.21564 -12.19669 -12.15482 -11.79510 -11.60238 -10.96124 -10.76595 -10.70545 -10.64702 -10.58060 -10.16435 -9.87609 -5.37129 -0.77739 -0.50195 0.30201 0.56355 0.64774 0.93200 1.10062 1.27279 1.45394 1.76596 1.99763 2.02560 2.69131 3.02999 3.12868 3.22755 3.32117 3.36128 3.37805 3.49104 3.64001 3.74720 3.80384 3.83323 3.93616 3.97043 4.12359 4.18988 4.26985 4.35607 4.48772 4.54572 4.57446 4.65513 4.77020 4.86208 4.87777 5.04126 5.19539 5.28580 5.45552 5.77260 5.78215 6.44064 7.11472 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.541 6.541 2 C -0.035 4.035 3 Si 0.671 3.329 4 C -0.181 4.181 5 C -0.040 4.040 6 C -0.684 4.684 7 S 2.708 3.292 8 O -0.947 6.947 9 O -0.955 6.955 10 N -1.102 6.102 11 C 0.124 3.876 12 H 0.119 0.881 13 C -0.132 4.132 14 C -0.121 4.121 15 H 0.102 0.898 16 C 0.140 3.860 17 N -0.379 5.379 18 C 0.253 3.747 19 N -0.547 5.547 20 C 0.197 3.803 21 N -0.314 5.314 22 C -0.138 4.138 23 C -0.079 4.079 24 S 0.139 5.861 25 H 0.386 0.614 26 H 0.087 0.913 27 H -0.238 1.238 28 H -0.235 1.235 29 H 0.157 0.843 30 H 0.420 0.580 31 H 0.085 0.915 32 H 0.095 0.905 33 H 0.106 0.894 34 H 0.092 0.908 35 H 0.218 0.782 36 H 0.216 0.784 37 H 0.091 0.909 38 H 0.078 0.922 39 H 0.186 0.814 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.400 -0.777 3.927 4.668 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.348 6.348 2 C -0.148 4.148 3 Si 0.569 3.431 4 C -0.299 4.299 5 C -0.069 4.069 6 C -0.784 4.784 7 S 2.794 3.206 8 O -0.937 6.937 9 O -0.946 6.946 10 N -0.860 5.860 11 C 0.017 3.983 12 H 0.137 0.863 13 C -0.172 4.172 14 C -0.141 4.141 15 H 0.120 0.880 16 C 0.018 3.982 17 N -0.170 5.170 18 C -0.044 4.044 19 N -0.274 5.274 20 C -0.106 4.106 21 N -0.141 5.141 22 C -0.178 4.178 23 C -0.218 4.218 24 S 0.402 5.598 25 H 0.234 0.766 26 H 0.104 0.896 27 H -0.161 1.161 28 H -0.158 1.158 29 H 0.175 0.825 30 H 0.256 0.744 31 H 0.104 0.896 32 H 0.114 0.886 33 H 0.124 0.876 34 H 0.110 0.890 35 H 0.234 0.766 36 H 0.232 0.768 37 H 0.110 0.890 38 H 0.097 0.903 39 H 0.204 0.796 Dipole moment (debyes) X Y Z Total from point charges 2.706 1.285 2.073 3.643 hybrid contribution 0.070 -1.625 0.187 1.638 sum 2.776 -0.340 2.260 3.596 Atomic orbital electron populations 1.86526 1.16574 1.81837 1.49894 1.23982 0.86089 1.09702 0.95048 0.94741 0.81931 0.78098 0.88288 1.23680 1.07352 0.97525 1.01312 1.19569 0.97751 0.95158 0.94391 1.30034 1.14253 1.25897 1.08192 1.01670 0.73229 0.72756 0.72898 1.93616 1.43103 1.78119 1.78846 1.93615 1.85567 1.86826 1.28551 1.55520 1.48141 1.67200 1.15158 1.22365 0.99423 0.97437 0.79115 0.86272 1.23349 0.99766 0.96539 0.97534 1.22697 0.94514 0.97891 0.99012 0.88020 1.21881 0.93433 0.96802 0.86131 1.50593 1.44309 1.04598 1.17495 1.26135 0.93385 1.00772 0.84118 1.70565 1.26365 0.98971 1.31493 1.26060 0.96276 0.97714 0.90584 1.78071 1.23977 0.92594 1.19477 1.23560 0.98124 0.97780 0.98309 1.25898 0.98250 0.95709 1.01948 1.84481 1.47015 1.13853 1.14429 0.76561 0.89561 1.16147 1.15827 0.82515 0.74418 0.89646 0.88641 0.87603 0.89029 0.76552 0.76789 0.89045 0.90300 0.79639 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 28. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.54 0.03 12.84 -35.23 -0.45 -0.42 16 2 C -0.04 0.02 2.95 36.01 0.11 0.12 16 3 Si 0.67 -0.92 30.97 -169.99 -5.26 -6.19 16 4 C -0.18 -0.34 5.75 -36.00 -0.21 -0.55 16 5 C -0.04 -0.08 9.57 -41.21 -0.39 -0.47 16 6 C -0.68 -1.03 5.86 -41.21 -0.24 -1.28 16 7 S 2.71 4.06 5.77 -107.50 -0.62 3.44 16 8 O -0.95 -4.30 17.15 -57.17 -0.98 -5.28 16 9 O -0.96 -3.97 17.64 -57.17 -1.01 -4.98 16 10 N -1.10 2.36 5.79 -4.20 -0.02 2.34 16 11 C 0.12 -0.34 4.42 -67.12 -0.30 -0.64 16 12 H 0.12 -0.30 7.76 -51.93 -0.40 -0.70 16 13 C -0.13 0.59 7.42 -25.92 -0.19 0.40 16 14 C -0.12 0.46 3.86 -89.72 -0.35 0.11 16 15 H 0.10 -0.29 8.14 -51.93 -0.42 -0.71 16 16 C 0.14 -0.58 6.39 -4.04 -0.03 -0.61 16 17 N -0.38 0.33 3.69 -62.63 -0.23 0.10 16 18 C 0.25 -0.21 12.63 -90.66 -1.14 -1.36 16 19 N -0.55 -1.17 11.19 -15.83 -0.18 -1.35 16 20 C 0.20 0.27 13.03 -91.81 -1.20 -0.92 16 21 N -0.31 -0.49 12.57 29.29 0.37 -0.12 16 22 C -0.14 0.38 7.45 -25.82 -0.19 0.19 16 23 C -0.08 -0.07 10.70 29.04 0.31 0.24 16 24 S 0.14 0.22 20.58 -107.50 -2.21 -2.00 16 25 H 0.39 -2.04 8.74 45.56 0.40 -1.64 16 26 H 0.09 -0.22 7.96 -51.92 -0.41 -0.63 16 27 H -0.24 -0.15 7.11 56.52 0.40 0.25 16 28 H -0.23 -0.41 7.11 56.52 0.40 -0.01 16 29 H 0.16 0.18 7.97 -52.48 -0.42 -0.24 16 30 H 0.42 -1.75 8.93 -34.46 -0.31 -2.06 16 31 H 0.08 -0.39 8.14 -51.93 -0.42 -0.81 16 32 H 0.10 -0.55 8.10 -51.93 -0.42 -0.97 16 33 H 0.11 -0.72 8.09 -51.93 -0.42 -1.14 16 34 H 0.09 -0.41 7.85 -51.92 -0.41 -0.81 16 35 H 0.22 -1.12 8.06 -52.49 -0.42 -1.54 16 36 H 0.22 -0.33 8.06 -52.49 -0.42 -0.75 16 37 H 0.09 -0.26 7.90 -51.93 -0.41 -0.67 16 38 H 0.08 -0.10 8.14 -51.93 -0.42 -0.53 16 39 H 0.19 -0.24 8.00 -52.49 -0.42 -0.66 16 LS Contribution 364.28 15.07 5.49 5.49 Total: 0.00 -13.89 364.28 -13.47 -27.36 By element: Atomic # 1 Polarization: -9.10 SS G_CDS: -4.53 Total: -13.63 kcal Atomic # 6 Polarization: -0.94 SS G_CDS: -3.82 Total: -4.76 kcal Atomic # 7 Polarization: 1.03 SS G_CDS: -0.06 Total: 0.97 kcal Atomic # 8 Polarization: -8.25 SS G_CDS: -2.44 Total: -10.69 kcal Atomic # 14 Polarization: -0.92 SS G_CDS: -5.26 Total: -6.19 kcal Atomic # 16 Polarization: 4.28 SS G_CDS: -2.83 Total: 1.45 kcal Total LS contribution 5.49 Total: 5.49 kcal Total: -13.89 -13.47 -27.36 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_40_14644090_15065232.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 87.655 kcal (2) G-P(sol) polarization free energy of solvation -13.895 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 73.760 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -13.467 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -27.361 kcal (6) G-S(sol) free energy of system = (1) + (5) 60.294 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.43 seconds