Wall clock time and date at job start Tue Mar 9 2021 14:27:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42903 * 1 3 3 Si 1.86293 * 109.47041 * 2 1 4 4 C 1.50699 * 109.47152 * 239.99653 * 2 1 3 5 5 C 1.33388 * 125.20187 * 299.71804 * 4 2 1 6 6 C 1.38427 * 114.91959 * 179.86174 * 5 4 2 7 7 S 1.76202 * 122.54081 * 180.20079 * 6 5 4 8 8 O 1.42106 * 106.39822 * 23.81586 * 7 6 5 9 9 O 1.42098 * 106.39986 * 156.73112 * 7 6 5 10 10 N 1.65592 * 107.22075 * 270.27518 * 7 6 5 11 11 C 1.46503 * 120.00163 * 64.99791 * 10 7 6 12 12 H 1.08994 * 112.84662 * 15.33480 * 11 10 7 13 13 C 1.53776 * 113.61184 * 146.53183 * 11 10 7 14 14 C 1.53777 * 87.08277 * 139.98166 * 13 11 10 15 15 H 1.08998 * 113.61915 * 89.11160 * 14 13 11 16 16 C 1.52996 * 113.61876 * 220.01730 * 14 13 11 17 17 N 1.46498 * 109.47672 * 184.99725 * 16 14 13 18 18 C 1.34428 * 126.82652 * 124.99848 * 17 16 14 19 19 N 1.30826 * 108.07792 * 179.97438 * 18 17 16 20 20 C 1.33241 * 109.83441 * 0.02562 * 19 18 17 21 21 N 1.30719 * 108.94065 * 359.75353 * 20 19 18 22 22 C 1.53785 * 113.61215 * 244.13950 * 11 10 7 23 23 C 1.33391 * 114.92028 * 0.43167 * 6 5 4 24 24 S 1.75876 * 125.20367 * 120.02937 * 4 2 1 25 25 H 0.96700 * 114.00311 * 300.00531 * 1 2 3 26 26 H 1.09008 * 109.46477 * 119.99697 * 2 1 3 27 27 H 1.48501 * 109.99918 * 178.67685 * 3 2 1 28 28 H 1.48506 * 109.99973 * 299.99283 * 3 2 1 29 29 H 1.08004 * 122.54341 * 0.02562 * 5 4 2 30 30 H 0.97000 * 119.99862 * 245.00463 * 10 7 6 31 31 H 1.09001 * 113.61622 * 254.52577 * 13 11 10 32 32 H 1.08996 * 113.62083 * 25.34692 * 13 11 10 33 33 H 1.09001 * 109.47275 * 305.00288 * 16 14 13 34 34 H 1.09010 * 109.47055 * 64.99835 * 16 14 13 35 35 H 1.07998 * 125.95804 * 359.93014 * 18 17 16 36 36 H 1.07997 * 125.52970 * 179.97438 * 20 19 18 37 37 H 1.08998 * 113.61310 * 334.56134 * 22 11 10 38 38 H 1.08994 * 113.61276 * 105.47560 * 22 11 10 39 39 H 1.07997 * 125.20518 * 179.79102 * 23 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0500 1.7564 0.0000 4 6 1.9314 -0.7105 -1.2304 5 6 1.6783 -1.9828 -1.5408 6 6 2.2453 -2.4178 -2.7264 7 16 2.0358 -4.0596 -3.3308 8 8 0.8368 -4.5517 -2.7480 9 8 2.2507 -4.0009 -4.7342 10 7 3.2681 -4.9728 -2.7067 11 6 3.3533 -5.1987 -1.2617 12 1 2.4290 -4.9518 -0.7396 13 6 3.9238 -6.5765 -0.8863 14 6 4.6905 -5.8645 0.2407 15 1 4.1326 -5.7990 1.1747 16 6 6.1169 -6.3829 0.4343 17 7 6.7198 -5.7308 1.5993 18 6 7.2672 -6.3356 2.6678 19 7 7.6932 -5.4076 3.4856 20 6 7.4361 -4.2035 2.9764 21 7 6.8450 -4.3494 1.8196 22 6 4.6079 -4.5877 -0.6156 23 6 2.9663 -1.5014 -3.3741 24 16 2.9474 0.0089 -2.4728 25 1 -0.3934 0.4418 0.7650 26 1 1.7923 -0.5138 0.8901 27 1 3.5346 1.7702 0.0322 28 1 1.5616 2.4678 -1.2086 29 1 1.0744 -2.6242 -0.9160 30 1 3.9337 -5.3580 -3.2979 31 1 3.1708 -7.2777 -0.5267 32 1 4.5698 -7.0052 -1.6524 33 1 6.0932 -7.4611 0.5931 34 1 6.7084 -6.1595 -0.4537 35 1 7.3417 -7.4016 2.8241 36 1 7.6801 -3.2600 3.4419 37 1 5.4424 -4.4711 -1.3071 38 1 4.4063 -3.6857 -0.0379 39 1 3.4824 -1.6620 -4.3090 There are 59 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 59 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_40_14644090_15065232.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 14:27:21 Heat of formation + Delta-G solvation = 55.211351 kcal Electronic energy + Delta-G solvation = -27250.724658 eV Core-core repulsion = 23224.054899 eV Total energy + Delta-G solvation = -4026.669759 eV No. of doubly occupied orbitals = 59 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 357.065 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -42.94329 -40.40014 -39.49096 -38.46952 -37.58143 -37.11902 -35.51167 -33.60670 -32.12186 -32.06824 -28.83393 -27.31053 -26.66979 -24.95848 -24.35921 -22.83133 -22.36124 -21.33235 -20.96334 -20.18105 -19.17831 -18.55993 -18.46398 -18.35346 -17.88423 -17.22415 -16.70804 -16.46624 -16.24179 -15.93912 -15.63954 -15.50467 -15.05798 -14.69418 -14.54617 -14.37088 -14.29319 -14.17193 -13.97959 -13.59829 -13.47596 -13.39272 -13.34276 -13.28914 -12.99861 -12.78989 -12.69564 -12.26178 -12.06308 -11.94409 -11.85084 -11.34754 -10.94642 -10.75586 -10.66122 -10.53990 -10.45500 -10.22290 -9.98563 -5.29907 -0.88271 -0.60945 0.20539 0.46474 0.73811 0.85231 1.12566 1.48756 1.49584 1.80300 1.96877 2.04568 2.58100 3.08468 3.31635 3.36833 3.49318 3.56899 3.62805 3.66095 3.73861 3.81310 3.96141 4.01701 4.12229 4.14841 4.31210 4.34700 4.42132 4.51404 4.60615 4.76137 4.80273 4.85563 4.86653 4.94307 5.04693 5.10159 5.34357 5.49205 5.50064 5.97783 6.00839 6.77939 7.17231 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.562 6.562 2 C -0.044 4.044 3 Si 0.754 3.246 4 C -0.195 4.195 5 C -0.051 4.051 6 C -0.689 4.689 7 S 2.726 3.274 8 O -0.980 6.980 9 O -0.984 6.984 10 N -1.086 6.086 11 C 0.114 3.886 12 H 0.114 0.886 13 C -0.119 4.119 14 C -0.114 4.114 15 H 0.091 0.909 16 C 0.133 3.867 17 N -0.378 5.378 18 C 0.255 3.745 19 N -0.587 5.587 20 C 0.183 3.817 21 N -0.341 5.341 22 C -0.138 4.138 23 C -0.078 4.078 24 S 0.119 5.881 25 H 0.407 0.593 26 H 0.110 0.890 27 H -0.265 1.265 28 H -0.280 1.280 29 H 0.161 0.839 30 H 0.432 0.568 31 H 0.091 0.909 32 H 0.115 0.885 33 H 0.141 0.859 34 H 0.098 0.902 35 H 0.257 0.743 36 H 0.229 0.771 37 H 0.094 0.906 38 H 0.060 0.940 39 H 0.206 0.794 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.881 -2.216 4.328 5.652 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.372 6.372 2 C -0.156 4.156 3 Si 0.657 3.343 4 C -0.312 4.312 5 C -0.080 4.080 6 C -0.789 4.789 7 S 2.814 3.186 8 O -0.970 6.970 9 O -0.974 6.974 10 N -0.848 5.848 11 C 0.007 3.993 12 H 0.132 0.868 13 C -0.159 4.159 14 C -0.134 4.134 15 H 0.110 0.890 16 C 0.012 3.988 17 N -0.168 5.168 18 C -0.041 4.041 19 N -0.315 5.315 20 C -0.120 4.120 21 N -0.169 5.169 22 C -0.178 4.178 23 C -0.216 4.216 24 S 0.382 5.618 25 H 0.259 0.741 26 H 0.128 0.872 27 H -0.191 1.191 28 H -0.206 1.206 29 H 0.178 0.822 30 H 0.270 0.730 31 H 0.110 0.890 32 H 0.133 0.867 33 H 0.158 0.842 34 H 0.116 0.884 35 H 0.273 0.727 36 H 0.245 0.755 37 H 0.112 0.888 38 H 0.078 0.922 39 H 0.223 0.777 Dipole moment (debyes) X Y Z Total from point charges 3.165 -0.175 2.477 4.024 hybrid contribution -0.070 -1.175 0.050 1.178 sum 3.095 -1.350 2.528 4.218 Atomic orbital electron populations 1.86471 1.16672 1.82453 1.51635 1.24184 0.86197 1.10340 0.94921 0.93815 0.78981 0.75681 0.85798 1.24062 1.07350 0.97747 1.02086 1.19708 0.98078 0.95428 0.94747 1.30029 1.14565 1.25983 1.08284 1.00880 0.73142 0.72630 0.71985 1.93572 1.45357 1.78773 1.79254 1.93569 1.86068 1.87261 1.30501 1.55193 1.47573 1.66306 1.15735 1.22552 0.99372 0.99113 0.78273 0.86835 1.23340 0.99772 0.95385 0.97390 1.22581 0.94954 0.97265 0.98592 0.89039 1.22215 0.92684 0.98435 0.85418 1.50773 1.44013 1.03809 1.18240 1.26872 0.91915 1.01968 0.83327 1.70541 1.28043 0.99738 1.33137 1.26422 0.96370 0.98396 0.90778 1.77992 1.24637 0.94475 1.19803 1.23543 0.98122 0.97671 0.98442 1.26165 0.97978 0.95063 1.02408 1.84543 1.47498 1.14619 1.15095 0.74058 0.87234 1.19074 1.20625 0.82204 0.72968 0.89043 0.86688 0.84157 0.88423 0.72743 0.75510 0.88753 0.92152 0.77744 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.56 0.05 12.84 -148.98 -1.91 -1.86 16 2 C -0.04 0.03 2.95 71.24 0.21 0.24 16 3 Si 0.75 -1.64 30.97 68.60 2.12 0.48 16 4 C -0.20 -0.91 5.75 24.59 0.14 -0.77 16 5 C -0.05 -0.25 9.57 21.22 0.20 -0.05 16 6 C -0.69 -2.76 5.86 21.22 0.12 -2.64 16 7 S 2.73 10.28 5.77 -56.49 -0.33 9.95 16 8 O -0.98 -9.96 17.15 -128.00 -2.20 -12.15 16 9 O -0.98 -8.86 17.64 -128.00 -2.26 -11.12 16 10 N -1.09 4.79 5.79 -167.20 -0.97 3.82 16 11 C 0.11 -0.65 4.42 45.52 0.20 -0.45 16 12 H 0.11 -0.50 7.76 -2.39 -0.02 -0.52 16 13 C -0.12 1.26 7.42 31.12 0.23 1.49 16 14 C -0.11 0.97 3.86 -10.21 -0.04 0.93 16 15 H 0.09 -0.55 8.14 -2.39 -0.02 -0.57 16 16 C 0.13 -1.34 6.39 86.38 0.55 -0.79 16 17 N -0.38 0.96 3.69 -352.07 -1.30 -0.34 16 18 C 0.26 -0.70 12.63 180.36 2.28 1.58 16 19 N -0.59 -2.61 11.19 -204.01 -2.28 -4.89 16 20 C 0.18 0.66 13.03 180.76 2.36 3.01 16 21 N -0.34 -1.22 12.57 -61.24 -0.77 -1.99 16 22 C -0.14 0.76 7.45 31.18 0.23 0.99 16 23 C -0.08 -0.21 10.70 66.72 0.71 0.51 16 24 S 0.12 0.52 20.58 -56.49 -1.16 -0.64 16 25 H 0.41 -4.51 8.74 -74.06 -0.65 -5.16 16 26 H 0.11 -0.61 7.96 -2.38 -0.02 -0.63 16 27 H -0.27 -0.58 7.11 99.48 0.71 0.13 16 28 H -0.28 -1.46 7.11 99.48 0.71 -0.75 16 29 H 0.16 0.57 7.97 -2.91 -0.02 0.55 16 30 H 0.43 -3.92 8.93 -96.75 -0.86 -4.79 16 31 H 0.09 -1.00 8.14 -2.39 -0.02 -1.02 16 32 H 0.11 -1.63 8.10 -2.39 -0.02 -1.65 16 33 H 0.14 -2.37 8.09 -2.39 -0.02 -2.39 16 34 H 0.10 -1.05 7.85 -2.38 -0.02 -1.07 16 35 H 0.26 -3.25 8.06 -2.91 -0.02 -3.27 16 36 H 0.23 -0.40 8.06 -2.91 -0.02 -0.42 16 37 H 0.09 -0.57 7.90 -2.39 -0.02 -0.59 16 38 H 0.06 -0.09 8.14 -2.39 -0.02 -0.11 16 39 H 0.21 -0.46 8.00 -2.91 -0.02 -0.48 16 Total: 0.00 -33.22 364.28 -4.21 -37.43 By element: Atomic # 1 Polarization: -22.38 SS G_CDS: -0.36 Total: -22.75 kcal Atomic # 6 Polarization: -3.15 SS G_CDS: 7.20 Total: 4.05 kcal Atomic # 7 Polarization: 1.93 SS G_CDS: -5.32 Total: -3.39 kcal Atomic # 8 Polarization: -18.76 SS G_CDS: -6.37 Total: -25.13 kcal Atomic # 14 Polarization: -1.64 SS G_CDS: 2.12 Total: 0.48 kcal Atomic # 16 Polarization: 10.80 SS G_CDS: -1.49 Total: 9.31 kcal Total: -33.22 -4.21 -37.43 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_40_14644090_15065232.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 92.641 kcal (2) G-P(sol) polarization free energy of solvation -33.220 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 59.421 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.210 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.430 kcal (6) G-S(sol) free energy of system = (1) + (5) 55.211 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds