Wall clock time and date at job start Tue Mar 9 2021 14:28:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42903 * 1 3 3 Si 1.86295 * 109.46853 * 2 1 4 4 C 1.50700 * 109.46645 * 119.99515 * 2 1 3 5 5 C 1.33388 * 125.20706 * 65.00788 * 4 2 1 6 6 C 1.38416 * 114.92402 * 179.97438 * 5 4 2 7 7 S 1.76199 * 122.53902 * 179.97438 * 6 5 4 8 8 O 1.42095 * 106.40310 * 336.46154 * 7 6 5 9 9 O 1.42106 * 106.40414 * 203.54009 * 7 6 5 10 10 N 1.65603 * 107.21620 * 90.00153 * 7 6 5 11 11 C 1.46503 * 119.99772 * 65.00038 * 10 7 6 12 12 H 1.08999 * 112.90845 * 13.75206 * 11 10 7 13 13 C 1.53787 * 113.61181 * 144.99788 * 11 10 7 14 14 C 1.53784 * 87.07923 * 89.11654 * 13 11 10 15 15 H 1.09000 * 113.61578 * 270.88484 * 14 13 11 16 16 C 1.52997 * 113.61330 * 139.97966 * 14 13 11 17 17 N 1.46499 * 109.47084 * 174.99792 * 16 14 13 18 18 C 1.36876 * 126.40030 * 269.71835 * 17 16 14 19 19 C 1.34672 * 106.82038 * 179.84450 * 18 17 16 20 20 N 1.34129 * 108.01685 * 0.41133 * 19 18 17 21 21 C 1.30497 * 109.25803 * 359.74203 * 20 19 18 22 22 C 1.53778 * 113.61472 * 242.49309 * 11 10 7 23 23 C 1.33384 * 114.92265 * 0.24866 * 6 5 4 24 24 S 1.75883 * 125.20169 * 244.95906 * 4 2 1 25 25 H 0.96703 * 113.99669 * 60.00769 * 1 2 3 26 26 H 1.08994 * 109.47529 * 239.99483 * 2 1 3 27 27 H 1.48498 * 110.00580 * 59.99439 * 3 2 1 28 28 H 1.48502 * 109.99984 * 181.31660 * 3 2 1 29 29 H 1.08005 * 122.53773 * 359.97438 * 5 4 2 30 30 H 0.96997 * 120.00136 * 244.99271 * 10 7 6 31 31 H 1.09004 * 113.61202 * 203.66406 * 13 11 10 32 32 H 1.08994 * 113.61447 * 334.56838 * 13 11 10 33 33 H 1.09004 * 109.47170 * 294.99762 * 16 14 13 34 34 H 1.08995 * 109.47328 * 55.00254 * 16 14 13 35 35 H 1.08001 * 126.59059 * 359.97317 * 18 17 16 36 36 H 1.07999 * 125.99280 * 180.12416 * 19 18 17 37 37 H 1.08003 * 125.64889 * 180.02562 * 21 20 19 38 38 H 1.08999 * 113.61111 * 25.43782 * 22 11 10 39 39 H 1.09004 * 113.61682 * 156.33179 * 22 11 10 40 40 H 1.08002 * 125.20602 * 179.75597 * 23 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0499 1.7564 0.0000 4 6 1.9312 -0.7103 1.2306 5 6 1.7534 -2.0050 1.4976 6 6 2.3062 -2.4358 2.6912 7 16 2.1900 -4.1056 3.2415 8 8 1.0540 -4.6630 2.5950 9 8 2.3431 -4.0743 4.6539 10 7 3.5089 -4.9108 2.6459 11 6 4.8546 -4.5448 3.0947 12 1 4.8484 -3.9090 3.9799 13 6 5.8146 -5.7414 3.2024 14 6 6.1772 -5.4824 1.7306 15 1 5.5375 -6.0109 1.0237 16 6 7.6672 -5.6521 1.4274 17 7 7.8927 -5.5030 -0.0124 18 6 7.8720 -6.5039 -0.9458 19 6 8.1235 -5.9303 -2.1380 20 7 8.3021 -4.6163 -1.9367 21 6 8.1654 -4.3530 -0.6659 22 6 5.7591 -4.0214 1.9665 23 6 2.9285 -1.4898 3.3962 24 16 2.8427 0.0408 2.5338 25 1 -0.3933 0.4416 -0.7651 26 1 1.7924 -0.5139 -0.8899 27 1 1.5613 2.4680 1.2084 28 1 3.5345 1.7703 -0.0321 29 1 1.2185 -2.6672 0.8327 30 1 3.3904 -5.6247 2.0001 31 1 6.6427 -5.5761 3.8917 32 1 5.3094 -6.6931 3.3667 33 1 8.2361 -4.8933 1.9648 34 1 7.9921 -6.6427 1.7453 35 1 7.6872 -7.5520 -0.7618 36 1 8.1771 -6.4398 -3.0888 37 1 8.2550 -3.3771 -0.2121 38 1 5.2090 -3.5847 1.1330 39 1 6.5720 -3.3858 2.3178 40 1 3.4131 -1.6410 4.3495 There are 59 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 59 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_40_14687902_15065232.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 14:28:10 Heat of formation + Delta-G solvation = 33.035190 kcal Electronic energy + Delta-G solvation = -27132.934086 eV Core-core repulsion = 23170.728607 eV Total energy + Delta-G solvation = -3962.205479 eV No. of doubly occupied orbitals = 59 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 356.070 amu Computer time = 1.45 seconds Orbital eigenvalues (eV) -42.98364 -40.76443 -39.46460 -38.29225 -37.62623 -36.93245 -35.56406 -33.53434 -32.05751 -30.38704 -28.85428 -27.28679 -27.03793 -24.91487 -24.48685 -22.25618 -21.90203 -21.38074 -21.00198 -20.22525 -19.07672 -18.76520 -18.55633 -18.35253 -17.83182 -17.27865 -16.67793 -16.31011 -16.21807 -15.70353 -15.55603 -15.34288 -15.20454 -14.77906 -14.55861 -14.50858 -14.31150 -14.23225 -14.15520 -14.06090 -13.75254 -13.33147 -13.30516 -13.19348 -13.10541 -12.92833 -12.64128 -12.42035 -12.24608 -12.06331 -11.82002 -11.67601 -10.86157 -10.80107 -10.60652 -10.49935 -10.23921 -9.92263 -9.43964 -5.38195 -0.84555 -0.56083 0.26668 0.52211 0.90894 1.06227 1.12124 1.43516 1.73650 1.76966 1.89200 2.30263 2.63087 3.02840 3.11114 3.17307 3.29543 3.35177 3.42738 3.59380 3.73971 3.75187 3.80645 3.85427 3.94063 3.98541 4.10171 4.15233 4.23968 4.36184 4.40911 4.54681 4.55145 4.63761 4.69145 4.72335 4.81037 4.83297 5.00240 5.09433 5.30325 5.70112 5.82427 6.23204 6.43252 7.17876 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.542 6.542 2 C -0.037 4.037 3 Si 0.672 3.328 4 C -0.181 4.181 5 C -0.039 4.039 6 C -0.684 4.684 7 S 2.711 3.289 8 O -0.947 6.947 9 O -0.950 6.950 10 N -1.096 6.096 11 C 0.125 3.875 12 H 0.109 0.891 13 C -0.133 4.133 14 C -0.128 4.128 15 H 0.100 0.900 16 C 0.113 3.887 17 N -0.457 5.457 18 C -0.058 4.058 19 C -0.029 4.029 20 N -0.496 5.496 21 C 0.182 3.818 22 C -0.153 4.153 23 C -0.084 4.084 24 S 0.141 5.859 25 H 0.386 0.614 26 H 0.087 0.913 27 H -0.234 1.234 28 H -0.239 1.239 29 H 0.158 0.842 30 H 0.421 0.579 31 H 0.101 0.899 32 H 0.084 0.916 33 H 0.097 0.903 34 H 0.095 0.905 35 H 0.173 0.827 36 H 0.169 0.831 37 H 0.201 0.799 38 H 0.079 0.921 39 H 0.097 0.903 40 H 0.186 0.814 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.162 1.241 -0.729 3.475 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.349 6.349 2 C -0.150 4.150 3 Si 0.571 3.429 4 C -0.298 4.298 5 C -0.067 4.067 6 C -0.783 4.783 7 S 2.797 3.203 8 O -0.938 6.938 9 O -0.940 6.940 10 N -0.855 5.855 11 C 0.017 3.983 12 H 0.127 0.873 13 C -0.173 4.173 14 C -0.147 4.147 15 H 0.118 0.882 16 C -0.010 4.010 17 N -0.140 5.140 18 C -0.190 4.190 19 C -0.177 4.177 20 N -0.214 5.214 21 C -0.100 4.100 22 C -0.193 4.193 23 C -0.223 4.223 24 S 0.405 5.595 25 H 0.235 0.765 26 H 0.105 0.895 27 H -0.158 1.158 28 H -0.162 1.162 29 H 0.176 0.824 30 H 0.256 0.744 31 H 0.120 0.880 32 H 0.103 0.897 33 H 0.115 0.885 34 H 0.113 0.887 35 H 0.190 0.810 36 H 0.186 0.814 37 H 0.217 0.783 38 H 0.098 0.902 39 H 0.115 0.885 40 H 0.204 0.796 Dipole moment (debyes) X Y Z Total from point charges 3.779 3.392 0.712 5.127 hybrid contribution -0.441 -2.206 -0.224 2.261 sum 3.338 1.185 0.489 3.576 Atomic orbital electron populations 1.86529 1.16568 1.81872 1.49885 1.24002 0.86126 1.09796 0.95046 0.94649 0.81866 0.78035 0.88350 1.23695 1.08310 0.97021 1.00805 1.19585 0.97297 0.95132 0.94715 1.30014 1.15517 1.25826 1.06960 1.01616 0.72232 0.72706 0.73697 1.93627 1.46852 1.76656 1.76625 1.93618 1.85788 1.86526 1.28035 1.55373 1.19531 1.49816 1.60737 1.21609 0.81309 0.98084 0.97321 0.87308 1.23320 0.99228 0.99235 0.95494 1.23017 0.95311 0.98305 0.98109 0.88209 1.21971 0.96567 1.04589 0.77839 1.45581 1.52144 1.08172 1.08140 1.22761 1.11628 0.95044 0.89614 1.22353 1.06827 0.90586 0.97947 1.70316 1.20018 1.16023 1.15068 1.24968 1.04651 0.91876 0.88542 1.23620 0.99997 0.96100 0.99538 1.25921 0.98636 0.95647 1.02070 1.84488 1.50837 1.11641 1.12530 0.76538 0.89530 1.15766 1.16234 0.82438 0.74382 0.88014 0.89729 0.88494 0.88677 0.80993 0.81406 0.78283 0.90241 0.88485 0.79647 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 28. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.54 0.01 12.86 -35.23 -0.45 -0.44 16 2 C -0.04 0.02 2.95 36.01 0.11 0.13 16 3 Si 0.67 -1.10 30.98 -169.99 -5.27 -6.36 16 4 C -0.18 -0.29 5.73 -36.00 -0.21 -0.50 16 5 C -0.04 -0.07 9.59 -41.21 -0.40 -0.46 16 6 C -0.68 -0.66 5.86 -41.21 -0.24 -0.90 16 7 S 2.71 2.97 5.77 -107.50 -0.62 2.35 16 8 O -0.95 -4.19 17.63 -57.17 -1.01 -5.20 16 9 O -0.95 -3.36 17.16 -57.17 -0.98 -4.35 16 10 N -1.10 2.61 5.73 -4.20 -0.02 2.58 16 11 C 0.12 -0.47 4.51 -67.12 -0.30 -0.77 16 12 H 0.11 -0.47 7.77 -51.93 -0.40 -0.87 16 13 C -0.13 0.66 7.43 -25.91 -0.19 0.47 16 14 C -0.13 0.59 3.79 -89.81 -0.34 0.25 16 15 H 0.10 -0.35 8.11 -51.93 -0.42 -0.78 16 16 C 0.11 -0.50 5.99 -4.04 -0.02 -0.52 16 17 N -0.46 0.52 2.75 -118.58 -0.33 0.19 16 18 C -0.06 0.01 11.58 -16.56 -0.19 -0.18 16 19 C -0.03 -0.06 11.87 -17.81 -0.21 -0.27 16 20 N -0.50 -1.95 11.25 -14.66 -0.16 -2.11 16 21 C 0.18 0.12 12.56 -90.37 -1.14 -1.01 16 22 C -0.15 0.68 7.43 -25.92 -0.19 0.48 16 23 C -0.08 0.00 10.70 29.04 0.31 0.31 16 24 S 0.14 0.12 20.59 -107.50 -2.21 -2.09 16 25 H 0.39 -2.03 8.74 45.56 0.40 -1.63 16 26 H 0.09 -0.21 7.96 -51.93 -0.41 -0.63 16 27 H -0.23 -0.31 7.11 56.52 0.40 0.09 16 28 H -0.24 -0.07 7.11 56.52 0.40 0.33 16 29 H 0.16 0.21 7.97 -52.48 -0.42 -0.21 16 30 H 0.42 -1.57 8.78 -34.47 -0.30 -1.87 16 31 H 0.10 -0.63 8.10 -51.93 -0.42 -1.05 16 32 H 0.08 -0.39 8.14 -51.93 -0.42 -0.81 16 33 H 0.10 -0.56 7.84 -51.93 -0.41 -0.97 16 34 H 0.09 -0.49 8.14 -51.93 -0.42 -0.92 16 35 H 0.17 -0.47 8.06 -52.49 -0.42 -0.89 16 36 H 0.17 0.08 8.06 -52.49 -0.42 -0.35 16 37 H 0.20 -0.47 8.06 -52.48 -0.42 -0.89 16 38 H 0.08 -0.24 8.14 -51.93 -0.42 -0.67 16 39 H 0.10 -0.56 7.90 -51.93 -0.41 -0.97 16 40 H 0.19 -0.48 8.00 -52.49 -0.42 -0.90 16 LS Contribution 368.69 15.07 5.56 5.56 Total: 0.00 -13.36 368.69 -13.47 -26.83 By element: Atomic # 1 Polarization: -9.01 SS G_CDS: -4.95 Total: -13.96 kcal Atomic # 6 Polarization: 0.02 SS G_CDS: -3.02 Total: -3.00 kcal Atomic # 7 Polarization: 1.18 SS G_CDS: -0.52 Total: 0.66 kcal Atomic # 8 Polarization: -7.54 SS G_CDS: -2.44 Total: -9.99 kcal Atomic # 14 Polarization: -1.10 SS G_CDS: -5.27 Total: -6.36 kcal Atomic # 16 Polarization: 3.10 SS G_CDS: -2.83 Total: 0.26 kcal Total LS contribution 5.56 Total: 5.56 kcal Total: -13.36 -13.47 -26.83 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_40_14687902_15065232.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.862 kcal (2) G-P(sol) polarization free energy of solvation -13.356 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 46.506 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -13.470 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -26.827 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.035 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.45 seconds