Wall clock time and date at job start Tue Mar 9 2021 14:28:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42903 * 1 3 3 Si 1.86295 * 109.46853 * 2 1 4 4 C 1.50700 * 109.46645 * 119.99515 * 2 1 3 5 5 C 1.33388 * 125.20706 * 65.00788 * 4 2 1 6 6 C 1.38416 * 114.92402 * 179.97438 * 5 4 2 7 7 S 1.76199 * 122.53902 * 179.97438 * 6 5 4 8 8 O 1.42095 * 106.40310 * 336.46154 * 7 6 5 9 9 O 1.42106 * 106.40414 * 203.54009 * 7 6 5 10 10 N 1.65603 * 107.21620 * 90.00153 * 7 6 5 11 11 C 1.46503 * 119.99772 * 65.00038 * 10 7 6 12 12 H 1.08999 * 112.90845 * 13.75206 * 11 10 7 13 13 C 1.53787 * 113.61181 * 144.99788 * 11 10 7 14 14 C 1.53784 * 87.07923 * 89.11654 * 13 11 10 15 15 H 1.09000 * 113.61578 * 270.88484 * 14 13 11 16 16 C 1.52997 * 113.61330 * 139.97966 * 14 13 11 17 17 N 1.46499 * 109.47084 * 174.99792 * 16 14 13 18 18 C 1.36876 * 126.40030 * 269.71835 * 17 16 14 19 19 C 1.34672 * 106.82038 * 179.84450 * 18 17 16 20 20 N 1.34129 * 108.01685 * 0.41133 * 19 18 17 21 21 C 1.30497 * 109.25803 * 359.74203 * 20 19 18 22 22 C 1.53778 * 113.61472 * 242.49309 * 11 10 7 23 23 C 1.33384 * 114.92265 * 0.24866 * 6 5 4 24 24 S 1.75883 * 125.20169 * 244.95906 * 4 2 1 25 25 H 0.96703 * 113.99669 * 60.00769 * 1 2 3 26 26 H 1.08994 * 109.47529 * 239.99483 * 2 1 3 27 27 H 1.48498 * 110.00580 * 59.99439 * 3 2 1 28 28 H 1.48502 * 109.99984 * 181.31660 * 3 2 1 29 29 H 1.08005 * 122.53773 * 359.97438 * 5 4 2 30 30 H 0.96997 * 120.00136 * 244.99271 * 10 7 6 31 31 H 1.09004 * 113.61202 * 203.66406 * 13 11 10 32 32 H 1.08994 * 113.61447 * 334.56838 * 13 11 10 33 33 H 1.09004 * 109.47170 * 294.99762 * 16 14 13 34 34 H 1.08995 * 109.47328 * 55.00254 * 16 14 13 35 35 H 1.08001 * 126.59059 * 359.97317 * 18 17 16 36 36 H 1.07999 * 125.99280 * 180.12416 * 19 18 17 37 37 H 1.08003 * 125.64889 * 180.02562 * 21 20 19 38 38 H 1.08999 * 113.61111 * 25.43782 * 22 11 10 39 39 H 1.09004 * 113.61682 * 156.33179 * 22 11 10 40 40 H 1.08002 * 125.20602 * 179.75597 * 23 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0499 1.7564 0.0000 4 6 1.9312 -0.7103 1.2306 5 6 1.7534 -2.0050 1.4976 6 6 2.3062 -2.4358 2.6912 7 16 2.1900 -4.1056 3.2415 8 8 1.0540 -4.6630 2.5950 9 8 2.3431 -4.0743 4.6539 10 7 3.5089 -4.9108 2.6459 11 6 4.8546 -4.5448 3.0947 12 1 4.8484 -3.9090 3.9799 13 6 5.8146 -5.7414 3.2024 14 6 6.1772 -5.4824 1.7306 15 1 5.5375 -6.0109 1.0237 16 6 7.6672 -5.6521 1.4274 17 7 7.8927 -5.5030 -0.0124 18 6 7.8720 -6.5039 -0.9458 19 6 8.1235 -5.9303 -2.1380 20 7 8.3021 -4.6163 -1.9367 21 6 8.1654 -4.3530 -0.6659 22 6 5.7591 -4.0214 1.9665 23 6 2.9285 -1.4898 3.3962 24 16 2.8427 0.0408 2.5338 25 1 -0.3933 0.4416 -0.7651 26 1 1.7924 -0.5139 -0.8899 27 1 1.5613 2.4680 1.2084 28 1 3.5345 1.7703 -0.0321 29 1 1.2185 -2.6672 0.8327 30 1 3.3904 -5.6247 2.0001 31 1 6.6427 -5.5761 3.8917 32 1 5.3094 -6.6931 3.3667 33 1 8.2361 -4.8933 1.9648 34 1 7.9921 -6.6427 1.7453 35 1 7.6872 -7.5520 -0.7618 36 1 8.1771 -6.4398 -3.0888 37 1 8.2550 -3.3771 -0.2121 38 1 5.2090 -3.5847 1.1330 39 1 6.5720 -3.3858 2.3178 40 1 3.4131 -1.6410 4.3495 There are 59 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 59 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_40_14687902_15065232.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 14:28:09 Heat of formation + Delta-G solvation = 28.627198 kcal Electronic energy + Delta-G solvation = -27133.125231 eV Core-core repulsion = 23170.728607 eV Total energy + Delta-G solvation = -3962.396624 eV No. of doubly occupied orbitals = 59 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 356.070 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -42.92903 -40.46052 -39.48842 -38.49089 -37.58554 -37.13877 -35.41429 -33.40989 -32.07294 -30.36735 -28.63320 -27.28945 -26.65317 -24.94242 -24.23456 -22.24340 -21.81141 -21.39384 -20.82857 -20.12381 -19.06658 -18.79010 -18.49304 -18.24978 -17.91075 -17.10632 -16.49211 -16.29459 -16.16748 -15.56804 -15.50173 -15.22518 -15.06801 -14.74016 -14.55926 -14.37021 -14.34135 -14.24901 -14.16250 -13.93145 -13.47269 -13.40813 -13.36021 -13.22947 -13.00574 -12.94051 -12.68205 -12.27056 -12.15568 -11.96064 -11.68730 -11.35128 -10.89398 -10.63961 -10.53142 -10.40073 -10.24927 -9.98452 -9.43489 -5.27183 -0.90301 -0.60907 0.22308 0.48046 0.85443 1.12816 1.17380 1.51385 1.80483 1.92182 1.95177 2.24502 2.56329 3.09178 3.34235 3.43241 3.51839 3.67281 3.69913 3.75318 3.82187 3.89489 4.02810 4.08793 4.14367 4.17144 4.32849 4.34774 4.47907 4.53671 4.61870 4.77416 4.78144 4.80537 4.81817 4.93487 4.98152 5.04763 5.10354 5.37067 5.46319 5.84026 5.92686 6.34217 6.77511 7.17876 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.563 6.563 2 C -0.049 4.049 3 Si 0.755 3.245 4 C -0.198 4.198 5 C -0.053 4.053 6 C -0.689 4.689 7 S 2.731 3.269 8 O -0.986 6.986 9 O -0.975 6.975 10 N -1.085 6.085 11 C 0.110 3.890 12 H 0.117 0.883 13 C -0.124 4.124 14 C -0.123 4.123 15 H 0.087 0.913 16 C 0.110 3.890 17 N -0.451 5.451 18 C -0.050 4.050 19 C -0.066 4.066 20 N -0.547 5.547 21 C 0.177 3.823 22 C -0.150 4.150 23 C -0.075 4.075 24 S 0.130 5.870 25 H 0.407 0.593 26 H 0.107 0.893 27 H -0.276 1.276 28 H -0.264 1.264 29 H 0.156 0.844 30 H 0.427 0.573 31 H 0.122 0.878 32 H 0.082 0.918 33 H 0.117 0.883 34 H 0.108 0.892 35 H 0.198 0.802 36 H 0.170 0.830 37 H 0.224 0.776 38 H 0.064 0.936 39 H 0.116 0.884 40 H 0.211 0.789 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.117 1.096 0.093 4.261 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.374 6.374 2 C -0.160 4.160 3 Si 0.658 3.342 4 C -0.315 4.315 5 C -0.082 4.082 6 C -0.789 4.789 7 S 2.818 3.182 8 O -0.976 6.976 9 O -0.965 6.965 10 N -0.847 5.847 11 C 0.003 3.997 12 H 0.135 0.865 13 C -0.163 4.163 14 C -0.142 4.142 15 H 0.106 0.894 16 C -0.011 4.011 17 N -0.133 5.133 18 C -0.184 4.184 19 C -0.213 4.213 20 N -0.267 5.267 21 C -0.106 4.106 22 C -0.190 4.190 23 C -0.214 4.214 24 S 0.393 5.607 25 H 0.259 0.741 26 H 0.125 0.875 27 H -0.203 1.203 28 H -0.189 1.189 29 H 0.173 0.827 30 H 0.264 0.736 31 H 0.141 0.859 32 H 0.100 0.900 33 H 0.136 0.864 34 H 0.127 0.873 35 H 0.214 0.786 36 H 0.187 0.813 37 H 0.240 0.760 38 H 0.083 0.917 39 H 0.134 0.866 40 H 0.228 0.772 Dipole moment (debyes) X Y Z Total from point charges 4.710 3.219 1.521 5.904 hybrid contribution -0.719 -2.147 -0.447 2.308 sum 3.991 1.072 1.073 4.270 Atomic orbital electron populations 1.86475 1.16842 1.82509 1.51575 1.24251 0.86119 1.10718 0.94962 0.93684 0.79053 0.75499 0.86008 1.24067 1.08472 0.97239 1.01710 1.19704 0.97788 0.95435 0.95226 1.29941 1.16150 1.25812 1.07032 1.00768 0.72054 0.72493 0.72896 1.93570 1.49391 1.77531 1.77153 1.93580 1.86298 1.86951 1.29680 1.55074 1.19419 1.49399 1.60768 1.21907 0.80525 0.99319 0.97986 0.86536 1.23335 0.99195 0.98410 0.95404 1.22923 0.95068 0.98013 0.98213 0.89426 1.22252 0.96801 1.06182 0.75915 1.45758 1.50938 1.07333 1.09298 1.23121 1.09944 0.96204 0.89117 1.22601 1.08783 0.90638 0.99246 1.70238 1.22013 1.17185 1.17216 1.25398 1.03937 0.93217 0.88046 1.23656 1.00165 0.96451 0.98688 1.26234 0.97835 0.94746 1.02561 1.84528 1.51021 1.12304 1.12852 0.74116 0.87536 1.20255 1.18889 0.82667 0.73552 0.85948 0.89951 0.86445 0.87336 0.78555 0.81279 0.75978 0.91741 0.86560 0.77220 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.56 -0.07 12.86 -148.98 -1.92 -1.98 16 2 C -0.05 0.05 2.95 71.24 0.21 0.26 16 3 Si 0.76 -2.31 30.98 68.60 2.13 -0.18 16 4 C -0.20 -0.77 5.73 24.59 0.14 -0.62 16 5 C -0.05 -0.24 9.59 21.21 0.20 -0.04 16 6 C -0.69 -1.73 5.86 21.21 0.12 -1.60 16 7 S 2.73 7.93 5.77 -56.49 -0.33 7.61 16 8 O -0.99 -10.17 17.63 -128.00 -2.26 -12.43 16 9 O -0.98 -7.21 17.16 -128.00 -2.20 -9.41 16 10 N -1.09 5.13 5.73 -167.19 -0.96 4.17 16 11 C 0.11 -0.95 4.51 45.52 0.21 -0.74 16 12 H 0.12 -1.17 7.77 -2.39 -0.02 -1.18 16 13 C -0.12 1.47 7.43 31.12 0.23 1.70 16 14 C -0.12 1.32 3.79 -10.27 -0.04 1.28 16 15 H 0.09 -0.69 8.11 -2.39 -0.02 -0.71 16 16 C 0.11 -1.21 5.99 86.38 0.52 -0.69 16 17 N -0.45 1.47 2.75 -529.07 -1.46 0.01 16 18 C -0.05 0.03 11.58 83.09 0.96 0.99 16 19 C -0.07 -0.36 11.87 83.52 0.99 0.64 16 20 N -0.55 -4.89 11.25 -200.30 -2.25 -7.14 16 21 C 0.18 0.20 12.56 180.26 2.26 2.47 16 22 C -0.15 1.52 7.43 31.12 0.23 1.75 16 23 C -0.08 0.01 10.70 66.72 0.71 0.72 16 24 S 0.13 0.28 20.59 -56.49 -1.16 -0.88 16 25 H 0.41 -4.39 8.74 -74.06 -0.65 -5.04 16 26 H 0.11 -0.57 7.96 -2.39 -0.02 -0.59 16 27 H -0.28 -1.06 7.11 99.48 0.71 -0.35 16 28 H -0.26 -0.23 7.11 99.48 0.71 0.47 16 29 H 0.16 0.65 7.97 -2.91 -0.02 0.63 16 30 H 0.43 -3.05 8.78 -96.75 -0.85 -3.90 16 31 H 0.12 -1.91 8.10 -2.39 -0.02 -1.93 16 32 H 0.08 -0.88 8.14 -2.39 -0.02 -0.90 16 33 H 0.12 -1.73 7.84 -2.38 -0.02 -1.74 16 34 H 0.11 -1.42 8.14 -2.39 -0.02 -1.44 16 35 H 0.20 -1.31 8.06 -2.91 -0.02 -1.33 16 36 H 0.17 0.49 8.06 -2.91 -0.02 0.46 16 37 H 0.22 -1.23 8.06 -2.91 -0.02 -1.25 16 38 H 0.06 -0.41 8.14 -2.39 -0.02 -0.43 16 39 H 0.12 -1.61 7.90 -2.38 -0.02 -1.63 16 40 H 0.21 -1.26 8.00 -2.91 -0.02 -1.29 16 Total: 0.00 -32.27 368.69 -4.01 -36.28 By element: Atomic # 1 Polarization: -21.78 SS G_CDS: -0.37 Total: -22.15 kcal Atomic # 6 Polarization: -0.65 SS G_CDS: 6.76 Total: 6.10 kcal Atomic # 7 Polarization: 1.71 SS G_CDS: -4.67 Total: -2.95 kcal Atomic # 8 Polarization: -17.46 SS G_CDS: -6.37 Total: -23.82 kcal Atomic # 14 Polarization: -2.31 SS G_CDS: 2.13 Total: -0.18 kcal Atomic # 16 Polarization: 8.21 SS G_CDS: -1.49 Total: 6.73 kcal Total: -32.27 -4.01 -36.28 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_40_14687902_15065232.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.912 kcal (2) G-P(sol) polarization free energy of solvation -32.270 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.642 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.014 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.285 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.627 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds