Wall clock time and date at job start Tue Mar 9 2021 14:28:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42898 * 1 3 3 Si 1.86302 * 109.47202 * 2 1 4 4 C 1.50699 * 109.47055 * 240.00415 * 2 1 3 5 5 C 1.33386 * 125.20520 * 313.59846 * 4 2 1 6 6 S 1.76206 * 122.53548 * 0.02852 * 5 4 2 7 7 O 1.42101 * 106.40024 * 180.39014 * 6 5 4 8 8 O 1.42102 * 106.40253 * 313.30779 * 6 5 4 9 9 N 1.65601 * 107.21943 * 66.85007 * 6 5 4 10 10 C 1.46507 * 119.99897 * 62.67516 * 9 6 5 11 11 H 1.08996 * 112.84973 * 13.65886 * 10 9 6 12 12 C 1.53779 * 113.61366 * 144.85838 * 10 9 6 13 13 C 1.53957 * 87.01942 * 139.95116 * 12 10 9 14 14 H 1.08998 * 113.61578 * 89.19656 * 13 12 10 15 15 C 1.50701 * 113.66519 * 220.06656 * 13 12 10 16 16 N 1.30503 * 125.65190 * 192.58035 * 15 13 12 17 17 C 1.34125 * 109.25640 * 180.02562 * 16 15 13 18 18 C 1.34667 * 108.01991 * 0.02562 * 17 16 15 19 19 N 1.35045 * 125.65203 * 12.28077 * 15 13 12 20 20 C 1.53787 * 113.61054 * 242.46688 * 10 9 6 21 21 C 1.38420 * 114.92631 * 179.75546 * 5 4 2 22 22 C 1.33392 * 114.92040 * 0.25336 * 21 5 4 23 23 S 1.75884 * 109.59038 * 359.97438 * 22 21 5 24 24 H 0.96696 * 114.00070 * 299.99798 * 1 2 3 25 25 H 1.09001 * 109.47252 * 120.00209 * 2 1 3 26 26 H 1.48502 * 110.00016 * 178.67904 * 3 2 1 27 27 H 1.48496 * 110.00142 * 300.00488 * 3 2 1 28 28 H 0.96993 * 120.00286 * 242.67741 * 9 6 5 29 29 H 1.09000 * 113.61062 * 254.52961 * 12 10 9 30 30 H 1.09001 * 113.61625 * 25.43037 * 12 10 9 31 31 H 1.07999 * 125.98639 * 179.97438 * 17 16 15 32 32 H 1.08007 * 126.58612 * 179.97438 * 18 17 16 33 33 H 0.96999 * 126.39050 * 359.97438 * 19 15 13 34 34 H 1.08997 * 113.61293 * 334.56134 * 20 10 9 35 35 H 1.08989 * 113.61519 * 105.47030 * 20 10 9 36 36 H 1.08005 * 122.54385 * 180.26918 * 21 5 4 37 37 H 1.08001 * 125.20298 * 180.02562 * 22 21 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0500 1.7565 0.0000 4 6 1.9313 -0.7103 -1.2305 5 6 1.4790 -1.8816 -1.6808 6 16 0.1958 -2.7768 -0.8704 7 8 -0.0050 -3.9631 -1.6265 8 8 0.5222 -2.7826 0.5126 9 7 -1.1926 -1.8866 -1.0195 10 6 -1.7518 -1.6184 -2.3469 11 1 -1.3124 -2.2422 -3.1252 12 6 -3.2891 -1.5913 -2.3737 13 6 -3.1712 -0.3960 -3.3367 14 1 -3.1213 -0.6844 -4.3866 15 6 -4.1803 0.6926 -3.0762 16 7 -4.4472 1.6894 -3.8750 17 6 -5.3950 2.4594 -3.3202 18 6 -5.7277 1.9194 -2.1322 19 7 -4.9624 0.7949 -1.9800 20 6 -1.7950 -0.1238 -2.7065 21 6 2.0899 -2.3377 -2.8361 22 6 3.0421 -1.5393 -3.3212 23 16 3.2057 -0.1232 -2.2911 24 1 -0.3933 0.4417 0.7650 25 1 1.7923 -0.5139 0.8900 26 1 3.5346 1.7703 0.0322 27 1 1.5614 2.4679 -1.2084 28 1 -1.6356 -1.5427 -0.2282 29 1 -3.7335 -2.4770 -2.8278 30 1 -3.7382 -1.3361 -1.4138 31 1 -5.8167 3.3557 -3.7504 32 1 -6.4612 2.2982 -1.4357 33 1 -4.9768 0.1867 -1.2245 34 1 -1.8349 0.5333 -1.8378 35 1 -1.0351 0.1736 -3.4290 36 1 1.8162 -3.2693 -3.3091 37 1 3.6230 -1.7326 -4.2109 There are 56 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 56 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_40_14772064_14772022.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 14:28:29 Heat of formation + Delta-G solvation = 33.726891 kcal Electronic energy + Delta-G solvation = -26355.856216 eV Core-core repulsion = 22549.218350 eV Total energy + Delta-G solvation = -3806.637866 eV No. of doubly occupied orbitals = 56 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 342.054 amu Computer time = 1.25 seconds Orbital eigenvalues (eV) -43.04813 -40.12559 -39.54290 -38.25244 -37.49348 -36.72169 -34.25615 -33.38212 -32.03311 -30.37044 -27.54281 -26.83763 -25.82999 -24.32548 -22.65023 -21.81519 -21.70064 -20.87200 -20.09790 -19.15002 -18.88592 -18.61320 -18.22615 -17.80193 -16.96644 -16.51995 -16.19338 -15.96380 -15.79822 -15.17949 -15.12954 -14.93810 -14.67152 -14.52639 -14.28161 -14.16472 -13.90516 -13.71132 -13.59226 -13.43225 -13.02371 -12.96029 -12.89957 -12.63011 -12.22564 -12.11873 -12.01564 -11.83307 -11.74025 -10.92701 -10.92232 -10.87884 -10.37271 -10.15036 -9.81920 -9.29711 -5.41525 -0.63932 -0.45212 0.27470 0.61737 0.92745 1.10811 1.11494 1.39601 1.70823 2.06478 2.18414 2.22940 2.74383 2.98563 3.26216 3.29883 3.42988 3.51300 3.56697 3.75677 3.84108 4.02376 4.14620 4.17159 4.20290 4.30464 4.49549 4.54035 4.59437 4.61590 4.69799 4.80368 4.85774 4.87366 4.97945 5.10313 5.16512 5.37233 5.83465 6.06777 6.18922 6.40250 7.19786 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.541 6.541 2 C -0.068 4.068 3 Si 0.683 3.317 4 C -0.050 4.050 5 C -0.660 4.660 6 S 2.719 3.281 7 O -0.961 6.961 8 O -0.955 6.955 9 N -1.077 6.077 10 C 0.134 3.866 11 H 0.118 0.882 12 C -0.139 4.139 13 C -0.029 4.029 14 H 0.122 0.878 15 C 0.224 3.776 16 N -0.488 5.488 17 C -0.027 4.027 18 C -0.057 4.057 19 N -0.565 5.565 20 C -0.131 4.131 21 C -0.077 4.077 22 C -0.208 4.208 23 S 0.133 5.867 24 H 0.392 0.608 25 H 0.111 0.889 26 H -0.237 1.237 27 H -0.234 1.234 28 H 0.420 0.580 29 H 0.088 0.912 30 H 0.084 0.916 31 H 0.170 0.830 32 H 0.177 0.823 33 H 0.417 0.583 34 H 0.097 0.903 35 H 0.077 0.923 36 H 0.161 0.839 37 H 0.177 0.823 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.487 3.494 3.671 5.281 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.349 6.349 2 C -0.180 4.180 3 Si 0.581 3.419 4 C -0.171 4.171 5 C -0.760 4.760 6 S 2.805 3.195 7 O -0.951 6.951 8 O -0.945 6.945 9 N -0.836 5.836 10 C 0.026 3.974 11 H 0.136 0.864 12 C -0.179 4.179 13 C -0.049 4.049 14 H 0.140 0.860 15 C -0.040 4.040 16 N -0.207 5.207 17 C -0.175 4.175 18 C -0.191 4.191 19 N -0.169 5.169 20 C -0.172 4.172 21 C -0.105 4.105 22 C -0.343 4.343 23 S 0.396 5.604 24 H 0.242 0.758 25 H 0.128 0.872 26 H -0.161 1.161 27 H -0.157 1.157 28 H 0.257 0.743 29 H 0.107 0.893 30 H 0.103 0.897 31 H 0.187 0.813 32 H 0.194 0.806 33 H 0.255 0.745 34 H 0.115 0.885 35 H 0.096 0.904 36 H 0.178 0.822 37 H 0.194 0.806 Dipole moment (debyes) X Y Z Total from point charges 0.608 4.379 2.081 4.886 hybrid contribution -1.115 -1.238 0.886 1.887 sum -0.507 3.141 2.966 4.350 Atomic orbital electron populations 1.86418 1.16066 1.81961 1.50457 1.24427 0.86698 1.11150 0.95726 0.94469 0.82152 0.77192 0.88075 1.23626 0.99006 0.95789 0.98638 1.29951 1.24306 1.09837 1.11858 1.01270 0.72480 0.72663 0.73095 1.93596 1.85133 1.42973 1.73409 1.93568 1.83531 1.86514 1.30927 1.55193 1.41766 1.73301 1.13353 1.22166 0.94124 0.96762 0.84356 0.86393 1.23453 0.96336 0.98617 0.99526 1.20892 0.92047 0.90605 1.01394 0.85959 1.22880 0.97298 0.98603 0.85266 1.70250 1.16097 1.04644 1.29758 1.22403 0.99116 1.01983 0.93993 1.22790 1.02586 0.91466 1.02262 1.43249 1.31735 1.22602 1.19314 1.23527 0.95333 0.96951 1.01355 1.19796 0.95620 1.01294 0.93791 1.25916 1.05007 0.98301 1.05075 1.84500 1.34644 1.23220 1.18036 0.75753 0.87199 1.16061 1.15701 0.74336 0.89327 0.89746 0.81299 0.80557 0.74475 0.88457 0.90424 0.82186 0.80614 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 28. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.54 2.16 8.15 -39.75 -0.32 1.83 16 2 C -0.07 0.12 2.07 36.01 0.07 0.19 16 3 Si 0.68 -1.73 31.06 -169.99 -5.28 -7.01 16 4 C -0.05 -0.05 5.78 -36.00 -0.21 -0.26 16 5 C -0.66 -1.04 5.73 -41.21 -0.24 -1.28 16 6 S 2.72 4.77 4.89 -107.50 -0.53 4.24 16 7 O -0.96 -4.47 16.97 -57.17 -0.97 -5.44 16 8 O -0.96 -3.65 16.65 -61.00 -1.02 -4.67 16 9 N -1.08 2.05 3.88 -4.19 -0.02 2.03 16 10 C 0.13 -0.29 4.39 -67.11 -0.29 -0.58 16 11 H 0.12 -0.24 7.84 -51.93 -0.41 -0.65 16 12 C -0.14 0.44 7.36 -25.83 -0.19 0.25 16 13 C -0.03 0.04 4.29 -90.86 -0.39 -0.35 16 14 H 0.12 -0.15 8.14 -51.93 -0.42 -0.58 16 15 C 0.22 0.21 7.37 -155.41 -1.14 -0.93 16 16 N -0.49 -1.93 11.25 -10.82 -0.12 -2.06 16 17 C -0.03 -0.05 11.87 -17.81 -0.21 -0.26 16 18 C -0.06 0.03 12.04 -16.57 -0.20 -0.17 16 19 N -0.57 0.76 5.94 -10.23 -0.06 0.70 16 20 C -0.13 0.23 7.43 -25.91 -0.19 0.04 16 21 C -0.08 -0.09 9.69 -41.21 -0.40 -0.49 16 22 C -0.21 -0.08 11.23 29.04 0.33 0.25 16 23 S 0.13 0.12 20.71 -107.50 -2.23 -2.10 16 24 H 0.39 -3.40 8.74 45.56 0.40 -3.01 16 25 H 0.11 -0.24 7.74 -51.93 -0.40 -0.64 16 26 H -0.24 0.03 7.11 56.52 0.40 0.43 16 27 H -0.23 -0.09 7.11 56.52 0.40 0.31 16 28 H 0.42 -1.73 7.98 -34.47 -0.28 -2.01 16 29 H 0.09 -0.29 8.14 -51.93 -0.42 -0.71 16 30 H 0.08 -0.40 6.65 -51.93 -0.35 -0.75 16 31 H 0.17 0.03 8.06 -52.49 -0.42 -0.39 16 32 H 0.18 -0.63 8.06 -52.48 -0.42 -1.06 16 33 H 0.42 -1.82 7.54 -40.82 -0.31 -2.12 16 34 H 0.10 -0.19 7.80 -51.93 -0.41 -0.59 16 35 H 0.08 -0.06 8.14 -51.94 -0.42 -0.48 16 36 H 0.16 0.03 7.74 -52.48 -0.41 -0.37 16 37 H 0.18 -0.36 8.06 -52.49 -0.42 -0.78 16 LS Contribution 333.58 15.07 5.03 5.03 Total: 0.00 -11.99 333.58 -12.46 -24.45 By element: Atomic # 1 Polarization: -9.52 SS G_CDS: -3.88 Total: -13.41 kcal Atomic # 6 Polarization: -0.53 SS G_CDS: -3.07 Total: -3.60 kcal Atomic # 7 Polarization: 0.88 SS G_CDS: -0.20 Total: 0.68 kcal Atomic # 8 Polarization: -5.97 SS G_CDS: -2.31 Total: -8.28 kcal Atomic # 14 Polarization: -1.73 SS G_CDS: -5.28 Total: -7.01 kcal Atomic # 16 Polarization: 4.89 SS G_CDS: -2.75 Total: 2.14 kcal Total LS contribution 5.03 Total: 5.03 kcal Total: -11.99 -12.46 -24.45 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_40_14772064_14772022.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.178 kcal (2) G-P(sol) polarization free energy of solvation -11.988 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 46.190 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.463 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -24.451 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.727 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.25 seconds