Wall clock time and date at job start Tue Mar 9 2021 14:28:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42898 * 1 3 3 Si 1.86302 * 109.47202 * 2 1 4 4 C 1.50699 * 109.47055 * 240.00415 * 2 1 3 5 5 C 1.33386 * 125.20520 * 313.59846 * 4 2 1 6 6 S 1.76206 * 122.53548 * 0.02852 * 5 4 2 7 7 O 1.42101 * 106.40024 * 180.39014 * 6 5 4 8 8 O 1.42102 * 106.40253 * 313.30779 * 6 5 4 9 9 N 1.65601 * 107.21943 * 66.85007 * 6 5 4 10 10 C 1.46507 * 119.99897 * 62.67516 * 9 6 5 11 11 H 1.08996 * 112.84973 * 13.65886 * 10 9 6 12 12 C 1.53779 * 113.61366 * 144.85838 * 10 9 6 13 13 C 1.53957 * 87.01942 * 139.95116 * 12 10 9 14 14 H 1.08998 * 113.61578 * 89.19656 * 13 12 10 15 15 C 1.50701 * 113.66519 * 220.06656 * 13 12 10 16 16 N 1.30503 * 125.65190 * 192.58035 * 15 13 12 17 17 C 1.34125 * 109.25640 * 180.02562 * 16 15 13 18 18 C 1.34667 * 108.01991 * 0.02562 * 17 16 15 19 19 N 1.35045 * 125.65203 * 12.28077 * 15 13 12 20 20 C 1.53787 * 113.61054 * 242.46688 * 10 9 6 21 21 C 1.38420 * 114.92631 * 179.75546 * 5 4 2 22 22 C 1.33392 * 114.92040 * 0.25336 * 21 5 4 23 23 S 1.75884 * 109.59038 * 359.97438 * 22 21 5 24 24 H 0.96696 * 114.00070 * 299.99798 * 1 2 3 25 25 H 1.09001 * 109.47252 * 120.00209 * 2 1 3 26 26 H 1.48502 * 110.00016 * 178.67904 * 3 2 1 27 27 H 1.48496 * 110.00142 * 300.00488 * 3 2 1 28 28 H 0.96993 * 120.00286 * 242.67741 * 9 6 5 29 29 H 1.09000 * 113.61062 * 254.52961 * 12 10 9 30 30 H 1.09001 * 113.61625 * 25.43037 * 12 10 9 31 31 H 1.07999 * 125.98639 * 179.97438 * 17 16 15 32 32 H 1.08007 * 126.58612 * 179.97438 * 18 17 16 33 33 H 0.96999 * 126.39050 * 359.97438 * 19 15 13 34 34 H 1.08997 * 113.61293 * 334.56134 * 20 10 9 35 35 H 1.08989 * 113.61519 * 105.47030 * 20 10 9 36 36 H 1.08005 * 122.54385 * 180.26918 * 21 5 4 37 37 H 1.08001 * 125.20298 * 180.02562 * 22 21 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0500 1.7565 0.0000 4 6 1.9313 -0.7103 -1.2305 5 6 1.4790 -1.8816 -1.6808 6 16 0.1958 -2.7768 -0.8704 7 8 -0.0050 -3.9631 -1.6265 8 8 0.5222 -2.7826 0.5126 9 7 -1.1926 -1.8866 -1.0195 10 6 -1.7518 -1.6184 -2.3469 11 1 -1.3124 -2.2422 -3.1252 12 6 -3.2891 -1.5913 -2.3737 13 6 -3.1712 -0.3960 -3.3367 14 1 -3.1213 -0.6844 -4.3866 15 6 -4.1803 0.6926 -3.0762 16 7 -4.4472 1.6894 -3.8750 17 6 -5.3950 2.4594 -3.3202 18 6 -5.7277 1.9194 -2.1322 19 7 -4.9624 0.7949 -1.9800 20 6 -1.7950 -0.1238 -2.7065 21 6 2.0899 -2.3377 -2.8361 22 6 3.0421 -1.5393 -3.3212 23 16 3.2057 -0.1232 -2.2911 24 1 -0.3933 0.4417 0.7650 25 1 1.7923 -0.5139 0.8900 26 1 3.5346 1.7703 0.0322 27 1 1.5614 2.4679 -1.2084 28 1 -1.6356 -1.5427 -0.2282 29 1 -3.7335 -2.4770 -2.8278 30 1 -3.7382 -1.3361 -1.4138 31 1 -5.8167 3.3557 -3.7504 32 1 -6.4612 2.2982 -1.4357 33 1 -4.9768 0.1867 -1.2245 34 1 -1.8349 0.5333 -1.8378 35 1 -1.0351 0.1736 -3.4290 36 1 1.8162 -3.2693 -3.3091 37 1 3.6230 -1.7326 -4.2109 There are 56 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 56 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_40_14772064_14772022.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 14:28:29 Heat of formation + Delta-G solvation = 29.095848 kcal Electronic energy + Delta-G solvation = -26356.057033 eV Core-core repulsion = 22549.218350 eV Total energy + Delta-G solvation = -3806.838683 eV No. of doubly occupied orbitals = 56 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 342.054 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -43.02206 -40.00834 -39.50440 -38.39189 -37.38027 -36.94076 -34.19079 -33.38894 -31.99535 -30.33647 -27.51509 -26.66081 -25.75899 -24.30525 -22.61116 -21.85983 -21.68535 -20.77977 -20.13413 -19.09835 -18.77720 -18.57666 -18.16843 -17.84273 -16.95922 -16.43959 -16.12547 -15.97466 -15.78206 -15.24517 -15.03175 -14.88423 -14.64674 -14.49824 -14.24938 -14.09618 -13.82647 -13.69441 -13.51279 -13.38860 -13.25665 -13.15238 -12.81484 -12.72454 -12.19225 -11.98618 -11.97515 -11.75058 -11.73651 -10.97707 -10.95953 -10.74190 -10.26734 -10.17078 -9.84684 -9.28132 -5.24913 -0.70077 -0.52419 0.24182 0.58448 1.01628 1.10833 1.15658 1.53672 1.84362 2.06491 2.18240 2.28672 2.70748 3.09115 3.35252 3.42247 3.48907 3.63273 3.67973 3.90996 3.98839 4.05569 4.22884 4.29816 4.33767 4.40514 4.57885 4.62103 4.69628 4.75337 4.79792 4.83401 4.92728 5.01420 5.07226 5.09202 5.18845 5.50737 5.83872 6.31186 6.56800 6.75504 7.20320 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.544 6.544 2 C -0.073 4.073 3 Si 0.768 3.232 4 C -0.056 4.056 5 C -0.671 4.671 6 S 2.732 3.268 7 O -0.994 6.994 8 O -0.977 6.977 9 N -1.060 6.060 10 C 0.132 3.868 11 H 0.115 0.885 12 C -0.127 4.127 13 C -0.031 4.031 14 H 0.116 0.884 15 C 0.216 3.784 16 N -0.538 5.538 17 C -0.066 4.066 18 C -0.041 4.041 19 N -0.553 5.553 20 C -0.125 4.125 21 C -0.093 4.093 22 C -0.205 4.205 23 S 0.111 5.889 24 H 0.415 0.585 25 H 0.119 0.881 26 H -0.271 1.271 27 H -0.275 1.275 28 H 0.432 0.568 29 H 0.094 0.906 30 H 0.106 0.894 31 H 0.173 0.827 32 H 0.210 0.790 33 H 0.433 0.567 34 H 0.103 0.897 35 H 0.063 0.937 36 H 0.165 0.835 37 H 0.197 0.803 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.520 3.511 5.108 6.691 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.356 6.356 2 C -0.185 4.185 3 Si 0.670 3.330 4 C -0.177 4.177 5 C -0.771 4.771 6 S 2.819 3.181 7 O -0.984 6.984 8 O -0.967 6.967 9 N -0.823 5.823 10 C 0.024 3.976 11 H 0.133 0.867 12 C -0.167 4.167 13 C -0.052 4.052 14 H 0.134 0.866 15 C -0.048 4.048 16 N -0.258 5.258 17 C -0.213 4.213 18 C -0.175 4.175 19 N -0.158 5.158 20 C -0.166 4.166 21 C -0.121 4.121 22 C -0.340 4.340 23 S 0.374 5.626 24 H 0.269 0.731 25 H 0.136 0.864 26 H -0.197 1.197 27 H -0.201 1.201 28 H 0.272 0.728 29 H 0.112 0.888 30 H 0.125 0.875 31 H 0.190 0.810 32 H 0.226 0.774 33 H 0.274 0.726 34 H 0.121 0.879 35 H 0.082 0.918 36 H 0.183 0.817 37 H 0.214 0.786 Dipole moment (debyes) X Y Z Total from point charges -0.459 4.373 3.578 5.669 hybrid contribution -0.806 -1.172 0.397 1.477 sum -1.265 3.202 3.975 5.259 Atomic orbital electron populations 1.86363 1.14661 1.82478 1.52115 1.24519 0.88008 1.11233 0.94733 0.93564 0.78940 0.74851 0.85623 1.24002 0.98617 0.95768 0.99293 1.29954 1.24696 1.10165 1.12236 1.00630 0.72834 0.72479 0.72172 1.93555 1.85722 1.45130 1.73944 1.93528 1.84136 1.86976 1.32101 1.54864 1.40468 1.72867 1.14114 1.22218 0.95008 0.96408 0.83989 0.86702 1.23456 0.95310 0.97885 1.00042 1.20915 0.91792 0.90913 1.01600 0.86641 1.23121 0.97713 0.98391 0.85599 1.70172 1.17667 1.06260 1.31749 1.22702 1.00083 1.02965 0.95581 1.23242 1.01979 0.90732 1.01579 1.43206 1.30805 1.22565 1.19212 1.23480 0.94722 0.97230 1.01164 1.19979 0.96152 1.01821 0.94148 1.26177 1.04795 0.97562 1.05431 1.84586 1.35255 1.24011 1.18795 0.73079 0.86372 1.19723 1.20054 0.72778 0.88771 0.87542 0.80958 0.77355 0.72567 0.87874 0.91776 0.81716 0.78586 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.54 4.96 8.15 -144.66 -1.18 3.78 16 2 C -0.07 0.29 2.07 71.24 0.15 0.43 16 3 Si 0.77 -3.81 31.06 68.60 2.13 -1.68 16 4 C -0.06 -0.13 5.78 24.59 0.14 0.01 16 5 C -0.67 -2.51 5.73 21.21 0.12 -2.39 16 6 S 2.73 10.05 4.89 -56.49 -0.28 9.77 16 7 O -0.99 -9.91 16.97 -128.00 -2.17 -12.08 16 8 O -0.98 -7.35 16.65 -124.34 -2.07 -9.42 16 9 N -1.06 4.84 3.88 -167.18 -0.65 4.19 16 10 C 0.13 -0.63 4.39 45.52 0.20 -0.43 16 11 H 0.12 -0.43 7.84 -2.39 -0.02 -0.45 16 12 C -0.13 0.96 7.36 31.18 0.23 1.19 16 13 C -0.03 0.08 4.29 -10.95 -0.05 0.04 16 14 H 0.12 -0.18 8.14 -2.39 -0.02 -0.20 16 15 C 0.22 0.39 7.37 138.13 1.02 1.41 16 16 N -0.54 -4.79 11.25 -188.13 -2.12 -6.91 16 17 C -0.07 -0.30 11.87 83.52 0.99 0.69 16 18 C -0.04 0.10 12.04 83.09 1.00 1.10 16 19 N -0.55 2.29 5.94 -186.27 -1.11 1.19 16 20 C -0.13 0.44 7.43 31.13 0.23 0.67 16 21 C -0.09 -0.31 9.69 21.22 0.21 -0.10 16 22 C -0.20 -0.28 11.23 66.72 0.75 0.47 16 23 S 0.11 0.31 20.71 -56.49 -1.17 -0.86 16 24 H 0.42 -8.09 8.74 -74.06 -0.65 -8.74 16 25 H 0.12 -0.61 7.74 -2.39 -0.02 -0.63 16 26 H -0.27 -0.18 7.11 99.48 0.71 0.53 16 27 H -0.27 -0.49 7.11 99.48 0.71 0.21 16 28 H 0.43 -4.30 7.98 -96.75 -0.77 -5.07 16 29 H 0.09 -0.74 8.14 -2.39 -0.02 -0.76 16 30 H 0.11 -1.29 6.65 -2.39 -0.02 -1.31 16 31 H 0.17 0.28 8.06 -2.91 -0.02 0.26 16 32 H 0.21 -2.04 8.06 -2.91 -0.02 -2.06 16 33 H 0.43 -4.84 7.54 -92.71 -0.70 -5.54 16 34 H 0.10 -0.48 7.80 -2.39 -0.02 -0.50 16 35 H 0.06 -0.03 8.14 -2.39 -0.02 -0.05 16 36 H 0.17 0.26 7.74 -2.91 -0.02 0.23 16 37 H 0.20 -0.77 8.06 -2.91 -0.02 -0.79 16 Total: 0.00 -29.25 333.58 -4.55 -33.79 By element: Atomic # 1 Polarization: -23.94 SS G_CDS: -0.93 Total: -24.87 kcal Atomic # 6 Polarization: -1.90 SS G_CDS: 4.99 Total: 3.09 kcal Atomic # 7 Polarization: 2.34 SS G_CDS: -3.87 Total: -1.53 kcal Atomic # 8 Polarization: -12.30 SS G_CDS: -5.42 Total: -17.72 kcal Atomic # 14 Polarization: -3.81 SS G_CDS: 2.13 Total: -1.68 kcal Atomic # 16 Polarization: 10.36 SS G_CDS: -1.45 Total: 8.91 kcal Total: -29.25 -4.55 -33.79 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_40_14772064_14772022.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.890 kcal (2) G-P(sol) polarization free energy of solvation -29.246 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.644 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.548 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.794 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.096 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds