Wall clock time and date at job start Tue Mar 9 2021 14:29:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46496 * 1 3 3 C 1.46497 * 120.00477 * 2 1 4 4 H 1.09002 * 112.85477 * 176.32164 * 3 2 1 5 5 C 1.53782 * 113.61252 * 307.52113 * 3 2 1 6 6 C 1.53785 * 87.08095 * 89.11180 * 5 3 2 7 7 H 1.08994 * 113.61827 * 270.88211 * 6 5 3 8 8 C 1.50700 * 113.61217 * 139.97769 * 6 5 3 9 9 C 1.38231 * 120.00492 * 299.72962 * 8 6 5 10 10 C 1.38238 * 120.00230 * 179.74423 * 9 8 6 11 11 C 1.38238 * 119.99714 * 0.52819 * 10 9 8 12 12 C 1.38233 * 119.99915 * 359.74864 * 11 10 9 13 13 C 1.38236 * 120.00218 * 359.97438 * 12 11 10 14 14 C 1.53778 * 113.61236 * 45.12618 * 3 2 1 15 15 S 1.65606 * 119.99760 * 180.02562 * 2 1 3 16 16 O 1.42094 * 106.40421 * 336.45434 * 15 2 1 17 17 O 1.42104 * 106.40058 * 203.53692 * 15 2 1 18 18 C 1.76204 * 107.21907 * 89.99915 * 15 2 1 19 19 C 1.33391 * 122.53513 * 270.02222 * 18 15 2 20 20 S 1.75883 * 109.59130 * 179.97438 * 19 18 15 21 21 C 1.75886 * 90.97061 * 359.97438 * 20 19 18 22 22 C 1.50702 * 125.20158 * 180.02562 * 21 20 19 23 23 O 1.42902 * 109.47139 * 119.98191 * 22 21 20 24 24 Si 1.86294 * 109.47322 * 359.97438 * 22 21 20 25 25 C 1.33393 * 109.59559 * 0.02562 * 21 20 19 26 26 H 1.09001 * 109.46749 * 276.04389 * 1 2 3 27 27 H 1.08992 * 109.47468 * 36.04324 * 1 2 3 28 28 H 1.08998 * 109.47204 * 156.04495 * 1 2 3 29 29 H 1.08998 * 113.61384 * 203.66076 * 5 3 2 30 30 H 1.08996 * 113.61632 * 334.48204 * 5 3 2 31 31 H 1.07997 * 119.99739 * 0.02562 * 9 8 6 32 32 H 1.08000 * 120.00316 * 180.29640 * 10 9 8 33 33 H 1.07996 * 119.99637 * 179.76824 * 11 10 9 34 34 H 1.07999 * 119.99703 * 180.02562 * 12 11 10 35 35 H 1.08004 * 119.99617 * 180.02562 * 13 12 11 36 36 H 1.09002 * 113.61673 * 25.43608 * 14 3 2 37 37 H 1.09004 * 113.61867 * 156.33936 * 14 3 2 38 38 H 1.08000 * 125.20527 * 359.97438 * 19 18 15 39 39 H 1.08999 * 109.47002 * 239.97482 * 22 21 20 40 40 H 0.96700 * 113.99966 * 180.02562 * 23 22 21 41 41 H 1.48500 * 110.00315 * 298.68203 * 24 22 21 42 42 H 1.48496 * 109.99883 * 60.00016 * 24 22 21 43 43 H 1.07990 * 122.53850 * 180.02562 * 25 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2686 0.0000 4 1 3.2773 1.1340 0.0644 5 6 1.7624 2.2312 -1.1176 6 6 0.7139 2.7753 -0.1329 7 1 -0.2367 2.2433 -0.1692 8 6 0.5509 4.2723 -0.1909 9 6 1.6268 5.0959 0.0827 10 6 1.4786 6.4691 0.0243 11 6 0.2516 7.0188 -0.2970 12 6 -0.8258 6.1952 -0.5650 13 6 -0.6761 4.8220 -0.5122 14 6 1.6447 2.2992 0.9985 15 16 2.2929 -1.4342 -0.0006 16 8 1.4113 -2.4068 0.5435 17 8 3.5759 -1.1571 0.5439 18 6 2.5537 -1.8852 -1.6839 19 6 1.6857 -2.6307 -2.3696 20 16 2.2803 -2.8720 -4.0072 21 6 3.7162 -1.9181 -3.6584 22 6 4.8245 -1.6267 -4.6371 23 8 4.9404 -0.2140 -4.8188 24 14 4.4381 -2.4335 -6.2712 25 6 3.6742 -1.4919 -2.3951 26 1 -0.3633 0.1082 1.0220 27 1 -0.3634 0.8309 -0.6046 28 1 -0.3633 -0.9391 -0.4172 29 1 2.5265 2.9598 -1.3884 30 1 1.3310 1.7287 -1.9832 31 1 2.5844 4.6665 0.3376 32 1 2.3205 7.1125 0.2334 33 1 0.1349 8.0916 -0.3390 34 1 -1.7843 6.6247 -0.8164 35 1 -1.5179 4.1787 -0.7220 36 1 1.1169 1.8516 1.8407 37 1 2.3766 3.0464 1.3052 38 1 0.7596 -3.0257 -1.9790 39 1 5.7640 -2.0214 -4.2502 40 1 5.6358 0.0472 -5.4380 41 1 4.3466 -3.9060 -6.1016 42 1 3.1594 -1.9038 -6.8093 43 1 4.4549 -0.8854 -1.9604 There are 61 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 61 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_40_14797360_15065232.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 14:29:18 Heat of formation + Delta-G solvation = 6.181893 kcal Electronic energy + Delta-G solvation = -28666.410445 eV Core-core repulsion = 24705.666201 eV Total energy + Delta-G solvation = -3960.744244 eV No. of doubly occupied orbitals = 61 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 366.079 amu Computer time = 1.34 seconds Orbital eigenvalues (eV) -41.44093 -39.43445 -39.33136 -38.29179 -37.60946 -36.85921 -35.18011 -32.01778 -31.92436 -31.58864 -28.42643 -27.24933 -26.76124 -25.29490 -24.80069 -23.58311 -22.26386 -21.18950 -20.81014 -19.50507 -19.05145 -18.67969 -18.50687 -17.81709 -17.79648 -17.15315 -16.42472 -16.28669 -16.08646 -15.71711 -15.51068 -15.22716 -15.13629 -14.52385 -14.41495 -14.30112 -14.19830 -14.17087 -14.14427 -14.08372 -13.57175 -13.38899 -13.29569 -13.14373 -13.07508 -12.99178 -12.88587 -12.64193 -12.44412 -12.21729 -12.07996 -11.89046 -11.71886 -11.42427 -11.16532 -10.64718 -10.23995 -10.07586 -9.87282 -9.79695 -9.53228 -5.37968 -0.80821 -0.49989 0.28408 0.45417 0.52112 0.55670 0.97439 1.06946 1.44432 1.75053 1.92105 2.70719 2.85273 3.09852 3.26707 3.40810 3.59661 3.61967 3.66713 3.74577 3.79949 3.89851 3.98163 4.12405 4.13138 4.16231 4.25120 4.27034 4.35597 4.43778 4.56538 4.59495 4.63500 4.70001 4.71847 4.75458 4.86858 4.91606 4.98900 5.00091 5.05223 5.12690 5.16977 5.25889 5.53066 5.60122 5.65899 5.75917 6.12253 6.41702 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.077 3.923 2 N -0.978 5.978 3 C 0.119 3.881 4 H 0.117 0.883 5 C -0.139 4.139 6 C -0.084 4.084 7 H 0.108 0.892 8 C -0.071 4.071 9 C -0.118 4.118 10 C -0.117 4.117 11 C -0.125 4.125 12 C -0.118 4.118 13 C -0.118 4.118 14 C -0.136 4.136 15 S 2.708 3.292 16 O -0.949 6.949 17 O -0.945 6.945 18 C -0.685 4.685 19 C -0.083 4.083 20 S 0.136 5.864 21 C -0.182 4.182 22 C -0.035 4.035 23 O -0.542 6.542 24 Si 0.672 3.328 25 C -0.037 4.037 26 H 0.067 0.933 27 H 0.084 0.916 28 H 0.075 0.925 29 H 0.097 0.903 30 H 0.076 0.924 31 H 0.123 0.877 32 H 0.122 0.878 33 H 0.121 0.879 34 H 0.121 0.879 35 H 0.119 0.881 36 H 0.079 0.921 37 H 0.099 0.901 38 H 0.186 0.814 39 H 0.087 0.913 40 H 0.386 0.614 41 H -0.238 1.238 42 H -0.235 1.235 43 H 0.158 0.842 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.874 2.385 -4.785 5.417 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 N -0.815 5.815 3 C 0.013 3.987 4 H 0.135 0.865 5 C -0.178 4.178 6 C -0.102 4.102 7 H 0.126 0.874 8 C -0.071 4.071 9 C -0.136 4.136 10 C -0.135 4.135 11 C -0.143 4.143 12 C -0.136 4.136 13 C -0.136 4.136 14 C -0.176 4.176 15 S 2.795 3.205 16 O -0.940 6.940 17 O -0.936 6.936 18 C -0.784 4.784 19 C -0.221 4.221 20 S 0.399 5.601 21 C -0.300 4.300 22 C -0.148 4.148 23 O -0.349 6.349 24 Si 0.570 3.430 25 C -0.066 4.066 26 H 0.085 0.915 27 H 0.102 0.898 28 H 0.094 0.906 29 H 0.115 0.885 30 H 0.095 0.905 31 H 0.141 0.859 32 H 0.140 0.860 33 H 0.139 0.861 34 H 0.139 0.861 35 H 0.137 0.863 36 H 0.098 0.902 37 H 0.117 0.883 38 H 0.203 0.797 39 H 0.105 0.895 40 H 0.234 0.766 41 H -0.162 1.162 42 H -0.159 1.159 43 H 0.176 0.824 Dipole moment (debyes) X Y Z Total from point charges -0.474 0.612 -5.405 5.460 hybrid contribution 0.318 0.905 0.867 1.293 sum -0.157 1.518 -4.538 4.788 Atomic orbital electron populations 1.21844 0.78115 1.03580 1.03251 1.57237 1.15206 1.20363 1.88682 1.21856 0.96624 0.82661 0.97568 0.86507 1.23465 0.98873 0.98391 0.97107 1.21993 0.99272 0.91541 0.97384 0.87379 1.19727 0.93583 0.94773 0.99001 1.21032 0.98649 0.93402 1.00471 1.21182 0.97584 0.95125 0.99646 1.21192 0.93221 0.99928 0.99973 1.21178 0.98922 0.93695 0.99827 1.21061 0.96961 0.95124 1.00411 1.23477 0.99219 0.97868 0.96988 1.01799 0.73251 0.72257 0.73173 1.93604 1.66166 1.58377 1.75807 1.93589 1.39955 1.84226 1.75788 1.30164 1.04211 1.15687 1.28359 1.25904 1.01894 0.97521 0.96813 1.84458 1.14382 1.49667 1.11562 1.23683 1.00384 1.07667 0.98218 1.23986 0.97319 0.88030 1.05492 1.86496 1.60247 1.19433 1.68698 0.94736 0.86645 0.80509 0.81064 1.19567 0.96625 0.98423 0.91991 0.91469 0.89791 0.90632 0.88472 0.90498 0.85919 0.86030 0.86138 0.86104 0.86254 0.90222 0.88270 0.79703 0.89496 0.76564 1.16218 1.15856 0.82417 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 22. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 -0.14 9.01 59.84 0.54 0.40 16 2 N -0.98 0.08 3.40 -113.75 -0.39 -0.31 16 3 C 0.12 -0.07 4.51 -67.12 -0.30 -0.37 16 4 H 0.12 -0.06 7.13 -51.93 -0.37 -0.43 16 5 C -0.14 0.16 6.90 -25.92 -0.18 -0.02 16 6 C -0.08 0.10 3.34 -90.81 -0.30 -0.20 16 7 H 0.11 -0.23 5.05 -51.93 -0.26 -0.49 16 8 C -0.07 -0.02 5.29 -104.62 -0.55 -0.57 16 9 C -0.12 -0.04 8.63 -39.58 -0.34 -0.38 16 10 C -0.12 -0.07 10.05 -39.58 -0.40 -0.46 16 11 C -0.13 -0.09 10.05 -39.58 -0.40 -0.49 16 12 C -0.12 -0.08 10.05 -39.58 -0.40 -0.48 16 13 C -0.12 -0.06 9.71 -39.58 -0.38 -0.45 16 14 C -0.14 0.15 6.88 -25.78 -0.18 -0.03 16 15 S 2.71 6.40 5.70 -107.50 -0.61 5.79 16 16 O -0.95 -4.33 16.59 -57.17 -0.95 -5.27 16 17 O -0.95 -4.58 16.29 -57.17 -0.93 -5.51 16 18 C -0.69 -1.28 5.89 -41.21 -0.24 -1.53 16 19 C -0.08 -0.08 10.70 29.04 0.31 0.23 16 20 S 0.14 0.20 20.58 -107.50 -2.21 -2.01 16 21 C -0.18 -0.35 5.76 -36.00 -0.21 -0.55 16 22 C -0.04 0.02 2.95 36.01 0.11 0.13 16 23 O -0.54 0.43 12.83 -35.23 -0.45 -0.03 16 24 Si 0.67 -1.07 30.97 -169.99 -5.26 -6.33 16 25 C -0.04 -0.08 9.56 -41.21 -0.39 -0.48 16 26 H 0.07 -0.14 8.14 -51.93 -0.42 -0.56 16 27 H 0.08 -0.27 4.89 -51.93 -0.25 -0.52 16 28 H 0.08 -0.18 7.57 -51.93 -0.39 -0.58 16 29 H 0.10 -0.13 7.73 -51.93 -0.40 -0.53 16 30 H 0.08 -0.07 8.12 -51.93 -0.42 -0.49 16 31 H 0.12 -0.15 6.64 -52.49 -0.35 -0.50 16 32 H 0.12 -0.12 8.06 -52.49 -0.42 -0.55 16 33 H 0.12 -0.10 8.06 -52.49 -0.42 -0.52 16 34 H 0.12 -0.11 8.06 -52.49 -0.42 -0.53 16 35 H 0.12 -0.12 8.06 -52.48 -0.42 -0.54 16 36 H 0.08 -0.07 8.10 -51.93 -0.42 -0.49 16 37 H 0.10 -0.17 6.30 -51.93 -0.33 -0.49 16 38 H 0.19 -0.26 8.00 -52.49 -0.42 -0.68 16 39 H 0.09 -0.20 7.96 -51.93 -0.41 -0.61 16 40 H 0.39 -2.25 8.74 45.56 0.40 -1.86 16 41 H -0.24 -0.16 7.11 56.52 0.40 0.25 16 42 H -0.24 -0.30 7.11 56.52 0.40 0.10 16 43 H 0.16 0.23 7.96 -52.49 -0.42 -0.19 16 LS Contribution 374.42 15.07 5.64 5.64 Total: 0.00 -9.63 374.42 -13.85 -23.48 By element: Atomic # 1 Polarization: -4.84 SS G_CDS: -5.36 Total: -10.21 kcal Atomic # 6 Polarization: -1.92 SS G_CDS: -3.32 Total: -5.24 kcal Atomic # 7 Polarization: 0.08 SS G_CDS: -0.39 Total: -0.31 kcal Atomic # 8 Polarization: -8.48 SS G_CDS: -2.33 Total: -10.81 kcal Atomic # 14 Polarization: -1.07 SS G_CDS: -5.26 Total: -6.33 kcal Atomic # 16 Polarization: 6.60 SS G_CDS: -2.83 Total: 3.78 kcal Total LS contribution 5.64 Total: 5.64 kcal Total: -9.63 -13.85 -23.48 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_40_14797360_15065232.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.662 kcal (2) G-P(sol) polarization free energy of solvation -9.628 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.033 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -13.851 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -23.480 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.182 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.34 seconds