Wall clock time and date at job start Tue Mar 9 2021 14:29:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46496 * 1 3 3 C 1.46497 * 120.00477 * 2 1 4 4 H 1.09002 * 112.85477 * 176.32164 * 3 2 1 5 5 C 1.53782 * 113.61252 * 307.52113 * 3 2 1 6 6 C 1.53785 * 87.08095 * 89.11180 * 5 3 2 7 7 H 1.08994 * 113.61827 * 270.88211 * 6 5 3 8 8 C 1.50700 * 113.61217 * 139.97769 * 6 5 3 9 9 C 1.38231 * 120.00492 * 299.72962 * 8 6 5 10 10 C 1.38238 * 120.00230 * 179.74423 * 9 8 6 11 11 C 1.38238 * 119.99714 * 0.52819 * 10 9 8 12 12 C 1.38233 * 119.99915 * 359.74864 * 11 10 9 13 13 C 1.38236 * 120.00218 * 359.97438 * 12 11 10 14 14 C 1.53778 * 113.61236 * 45.12618 * 3 2 1 15 15 S 1.65606 * 119.99760 * 180.02562 * 2 1 3 16 16 O 1.42094 * 106.40421 * 336.45434 * 15 2 1 17 17 O 1.42104 * 106.40058 * 203.53692 * 15 2 1 18 18 C 1.76204 * 107.21907 * 89.99915 * 15 2 1 19 19 C 1.33391 * 122.53513 * 270.02222 * 18 15 2 20 20 S 1.75883 * 109.59130 * 179.97438 * 19 18 15 21 21 C 1.75886 * 90.97061 * 359.97438 * 20 19 18 22 22 C 1.50702 * 125.20158 * 180.02562 * 21 20 19 23 23 O 1.42902 * 109.47139 * 119.98191 * 22 21 20 24 24 Si 1.86294 * 109.47322 * 359.97438 * 22 21 20 25 25 C 1.33393 * 109.59559 * 0.02562 * 21 20 19 26 26 H 1.09001 * 109.46749 * 276.04389 * 1 2 3 27 27 H 1.08992 * 109.47468 * 36.04324 * 1 2 3 28 28 H 1.08998 * 109.47204 * 156.04495 * 1 2 3 29 29 H 1.08998 * 113.61384 * 203.66076 * 5 3 2 30 30 H 1.08996 * 113.61632 * 334.48204 * 5 3 2 31 31 H 1.07997 * 119.99739 * 0.02562 * 9 8 6 32 32 H 1.08000 * 120.00316 * 180.29640 * 10 9 8 33 33 H 1.07996 * 119.99637 * 179.76824 * 11 10 9 34 34 H 1.07999 * 119.99703 * 180.02562 * 12 11 10 35 35 H 1.08004 * 119.99617 * 180.02562 * 13 12 11 36 36 H 1.09002 * 113.61673 * 25.43608 * 14 3 2 37 37 H 1.09004 * 113.61867 * 156.33936 * 14 3 2 38 38 H 1.08000 * 125.20527 * 359.97438 * 19 18 15 39 39 H 1.08999 * 109.47002 * 239.97482 * 22 21 20 40 40 H 0.96700 * 113.99966 * 180.02562 * 23 22 21 41 41 H 1.48500 * 110.00315 * 298.68203 * 24 22 21 42 42 H 1.48496 * 109.99883 * 60.00016 * 24 22 21 43 43 H 1.07990 * 122.53850 * 180.02562 * 25 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2686 0.0000 4 1 3.2773 1.1340 0.0644 5 6 1.7624 2.2312 -1.1176 6 6 0.7139 2.7753 -0.1329 7 1 -0.2367 2.2433 -0.1692 8 6 0.5509 4.2723 -0.1909 9 6 1.6268 5.0959 0.0827 10 6 1.4786 6.4691 0.0243 11 6 0.2516 7.0188 -0.2970 12 6 -0.8258 6.1952 -0.5650 13 6 -0.6761 4.8220 -0.5122 14 6 1.6447 2.2992 0.9985 15 16 2.2929 -1.4342 -0.0006 16 8 1.4113 -2.4068 0.5435 17 8 3.5759 -1.1571 0.5439 18 6 2.5537 -1.8852 -1.6839 19 6 1.6857 -2.6307 -2.3696 20 16 2.2803 -2.8720 -4.0072 21 6 3.7162 -1.9181 -3.6584 22 6 4.8245 -1.6267 -4.6371 23 8 4.9404 -0.2140 -4.8188 24 14 4.4381 -2.4335 -6.2712 25 6 3.6742 -1.4919 -2.3951 26 1 -0.3633 0.1082 1.0220 27 1 -0.3634 0.8309 -0.6046 28 1 -0.3633 -0.9391 -0.4172 29 1 2.5265 2.9598 -1.3884 30 1 1.3310 1.7287 -1.9832 31 1 2.5844 4.6665 0.3376 32 1 2.3205 7.1125 0.2334 33 1 0.1349 8.0916 -0.3390 34 1 -1.7843 6.6247 -0.8164 35 1 -1.5179 4.1787 -0.7220 36 1 1.1169 1.8516 1.8407 37 1 2.3766 3.0464 1.3052 38 1 0.7596 -3.0257 -1.9790 39 1 5.7640 -2.0214 -4.2502 40 1 5.6358 0.0472 -5.4380 41 1 4.3466 -3.9060 -6.1016 42 1 3.1594 -1.9038 -6.8093 43 1 4.4549 -0.8854 -1.9604 There are 61 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 61 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_40_14797360_15065232.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 14:29:17 Heat of formation + Delta-G solvation = 7.559266 kcal Electronic energy + Delta-G solvation = -28666.350718 eV Core-core repulsion = 24705.666201 eV Total energy + Delta-G solvation = -3960.684516 eV No. of doubly occupied orbitals = 61 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 366.079 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -41.38448 -39.48511 -39.29787 -38.55368 -37.54572 -37.13118 -35.15161 -32.05507 -31.89333 -31.55651 -28.34581 -27.27393 -26.67746 -25.26991 -24.85439 -23.55861 -22.25327 -21.23946 -20.81084 -19.58267 -19.10220 -18.74738 -18.42394 -17.93546 -17.79628 -17.14871 -16.45292 -16.30078 -16.10125 -15.69896 -15.54823 -15.17886 -15.11144 -14.57771 -14.37417 -14.34928 -14.24617 -14.15856 -14.12669 -14.08396 -13.58185 -13.49488 -13.38563 -13.24705 -13.15622 -13.02197 -12.94289 -12.70444 -12.43203 -12.23921 -12.03494 -11.98074 -11.68743 -11.35342 -11.10523 -10.61056 -10.25609 -10.06552 -9.96828 -9.79002 -9.51666 -5.27349 -0.94891 -0.60341 0.20171 0.46300 0.46857 0.52734 0.87809 1.13350 1.51922 1.80662 1.86057 2.54965 2.86515 3.02421 3.31587 3.45670 3.66035 3.68375 3.72089 3.79335 3.83648 3.97399 4.05464 4.08874 4.17747 4.23709 4.31557 4.37841 4.43423 4.52630 4.57323 4.65383 4.66878 4.77672 4.79872 4.81386 4.87744 4.94909 4.98214 5.07332 5.08930 5.16989 5.22108 5.32789 5.57038 5.62133 5.66953 5.79442 6.15583 6.80373 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.066 3.934 2 N -0.972 5.972 3 C 0.114 3.886 4 H 0.113 0.887 5 C -0.133 4.133 6 C -0.079 4.079 7 H 0.119 0.881 8 C -0.077 4.077 9 C -0.127 4.127 10 C -0.130 4.130 11 C -0.140 4.140 12 C -0.131 4.131 13 C -0.130 4.130 14 C -0.135 4.135 15 S 2.721 3.279 16 O -0.974 6.974 17 O -0.975 6.975 18 C -0.690 4.690 19 C -0.080 4.080 20 S 0.123 5.877 21 C -0.195 4.195 22 C -0.044 4.044 23 O -0.558 6.558 24 Si 0.756 3.244 25 C -0.051 4.051 26 H 0.072 0.928 27 H 0.100 0.900 28 H 0.082 0.918 29 H 0.099 0.901 30 H 0.076 0.924 31 H 0.135 0.865 32 H 0.133 0.867 33 H 0.131 0.869 34 H 0.132 0.868 35 H 0.132 0.868 36 H 0.078 0.922 37 H 0.105 0.895 38 H 0.206 0.794 39 H 0.107 0.893 40 H 0.407 0.593 41 H -0.269 1.269 42 H -0.276 1.276 43 H 0.160 0.840 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.899 2.755 -5.242 5.990 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 N -0.811 5.811 3 C 0.008 3.992 4 H 0.131 0.869 5 C -0.172 4.172 6 C -0.096 4.096 7 H 0.136 0.864 8 C -0.077 4.077 9 C -0.145 4.145 10 C -0.148 4.148 11 C -0.158 4.158 12 C -0.149 4.149 13 C -0.148 4.148 14 C -0.174 4.174 15 S 2.811 3.189 16 O -0.964 6.964 17 O -0.965 6.965 18 C -0.790 4.790 19 C -0.218 4.218 20 S 0.386 5.614 21 C -0.312 4.312 22 C -0.157 4.157 23 O -0.368 6.368 24 Si 0.659 3.341 25 C -0.079 4.079 26 H 0.090 0.910 27 H 0.118 0.882 28 H 0.101 0.899 29 H 0.117 0.883 30 H 0.094 0.906 31 H 0.152 0.848 32 H 0.151 0.849 33 H 0.149 0.851 34 H 0.150 0.850 35 H 0.150 0.850 36 H 0.097 0.903 37 H 0.123 0.877 38 H 0.223 0.777 39 H 0.124 0.876 40 H 0.259 0.741 41 H -0.195 1.195 42 H -0.202 1.202 43 H 0.178 0.822 Dipole moment (debyes) X Y Z Total from point charges -0.420 1.001 -5.849 5.949 hybrid contribution 0.279 0.823 0.974 1.305 sum -0.141 1.824 -4.875 5.207 Atomic orbital electron populations 1.22092 0.76917 1.04735 1.04077 1.57041 1.15864 1.19603 1.88544 1.21945 0.96520 0.82467 0.98281 0.86887 1.23423 0.98887 0.98078 0.96838 1.22003 0.99684 0.90814 0.97146 0.86386 1.19912 0.93562 0.95466 0.98800 1.21256 0.99302 0.93508 1.00421 1.21433 0.98047 0.95606 0.99719 1.21435 0.93448 1.00683 1.00187 1.21424 0.99527 0.94025 0.99961 1.21313 0.97585 0.95405 1.00462 1.23500 0.99362 0.97701 0.96882 1.01133 0.72434 0.72294 0.73083 1.93564 1.66569 1.59661 1.76650 1.93544 1.41504 1.84730 1.76738 1.30077 1.04613 1.16353 1.27956 1.26190 1.02405 0.96841 0.96384 1.84516 1.14788 1.49951 1.12133 1.24075 1.00983 1.07417 0.98739 1.24174 0.97436 0.88512 1.05530 1.86446 1.61571 1.19100 1.69719 0.93781 0.84165 0.77298 0.78877 1.19695 0.96955 0.98930 0.92332 0.90963 0.88191 0.89901 0.88270 0.90572 0.84771 0.84904 0.85135 0.85020 0.84990 0.90334 0.87700 0.77701 0.87555 0.74079 1.19520 1.20179 0.82205 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 -0.26 9.01 127.77 1.15 0.89 16 2 N -0.97 0.06 3.40 -513.79 -1.75 -1.69 16 3 C 0.11 -0.13 4.51 45.52 0.21 0.08 16 4 H 0.11 -0.04 7.13 -2.39 -0.02 -0.05 16 5 C -0.13 0.35 6.90 31.12 0.21 0.57 16 6 C -0.08 0.23 3.34 -10.92 -0.04 0.19 16 7 H 0.12 -0.61 5.05 -2.39 -0.01 -0.63 16 8 C -0.08 -0.02 5.29 -19.87 -0.11 -0.12 16 9 C -0.13 -0.06 8.63 22.27 0.19 0.13 16 10 C -0.13 -0.15 10.05 22.27 0.22 0.07 16 11 C -0.14 -0.21 10.05 22.27 0.22 0.01 16 12 C -0.13 -0.18 10.05 22.27 0.22 0.05 16 13 C -0.13 -0.10 9.71 22.27 0.22 0.11 16 14 C -0.14 0.32 6.88 31.21 0.21 0.54 16 15 S 2.72 14.75 5.70 -56.49 -0.32 14.43 16 16 O -0.97 -9.47 16.59 -128.00 -2.12 -11.59 16 17 O -0.97 -10.54 16.29 -128.00 -2.08 -12.63 16 18 C -0.69 -2.93 5.89 21.22 0.12 -2.81 16 19 C -0.08 -0.18 10.70 66.72 0.71 0.54 16 20 S 0.12 0.42 20.58 -56.49 -1.16 -0.74 16 21 C -0.19 -0.78 5.76 24.59 0.14 -0.64 16 22 C -0.04 0.07 2.95 71.24 0.21 0.28 16 23 O -0.56 1.25 12.83 -148.98 -1.91 -0.66 16 24 Si 0.76 -2.45 30.97 68.60 2.12 -0.33 16 25 C -0.05 -0.25 9.56 21.22 0.20 -0.04 16 26 H 0.07 -0.34 8.14 -2.39 -0.02 -0.36 16 27 H 0.10 -0.74 4.89 -2.39 -0.01 -0.75 16 28 H 0.08 -0.44 7.57 -2.39 -0.02 -0.46 16 29 H 0.10 -0.29 7.73 -2.39 -0.02 -0.31 16 30 H 0.08 -0.17 8.12 -2.39 -0.02 -0.19 16 31 H 0.13 -0.37 6.64 -2.91 -0.02 -0.39 16 32 H 0.13 -0.28 8.06 -2.91 -0.02 -0.30 16 33 H 0.13 -0.20 8.06 -2.91 -0.02 -0.22 16 34 H 0.13 -0.24 8.06 -2.91 -0.02 -0.27 16 35 H 0.13 -0.35 8.06 -2.91 -0.02 -0.37 16 36 H 0.08 -0.15 8.10 -2.39 -0.02 -0.17 16 37 H 0.10 -0.38 6.30 -2.38 -0.02 -0.39 16 38 H 0.21 -0.61 8.00 -2.91 -0.02 -0.63 16 39 H 0.11 -0.60 7.96 -2.39 -0.02 -0.62 16 40 H 0.41 -5.23 8.74 -74.06 -0.65 -5.88 16 41 H -0.27 -0.47 7.11 99.48 0.71 0.24 16 42 H -0.28 -0.94 7.11 99.48 0.71 -0.23 16 43 H 0.16 0.59 7.96 -2.92 -0.02 0.57 16 Total: 0.00 -22.11 374.42 -2.67 -24.78 By element: Atomic # 1 Polarization: -11.86 SS G_CDS: 0.44 Total: -11.42 kcal Atomic # 6 Polarization: -4.27 SS G_CDS: 4.12 Total: -0.16 kcal Atomic # 7 Polarization: 0.06 SS G_CDS: -1.75 Total: -1.69 kcal Atomic # 8 Polarization: -18.76 SS G_CDS: -6.12 Total: -24.88 kcal Atomic # 14 Polarization: -2.45 SS G_CDS: 2.12 Total: -0.33 kcal Atomic # 16 Polarization: 15.18 SS G_CDS: -1.48 Total: 13.69 kcal Total: -22.11 -2.67 -24.78 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_40_14797360_15065232.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.336 kcal (2) G-P(sol) polarization free energy of solvation -22.105 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.231 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.672 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -24.777 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.559 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds