Wall clock time and date at job start Tue Mar 9 2021 14:30:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42903 * 1 3 3 Si 1.86305 * 109.46645 * 2 1 4 4 C 1.50696 * 109.47131 * 240.00209 * 2 1 3 5 5 C 1.33395 * 125.20224 * 299.99654 * 4 2 1 6 6 C 1.38424 * 114.91887 * 179.97438 * 5 4 2 7 7 S 1.76198 * 122.53538 * 180.02562 * 6 5 4 8 8 O 1.42098 * 106.40453 * 203.53718 * 7 6 5 9 9 O 1.42096 * 106.40638 * 336.46173 * 7 6 5 10 10 N 1.65603 * 107.21636 * 90.00106 * 7 6 5 11 11 C 1.46501 * 119.99963 * 64.99879 * 10 7 6 12 12 H 1.08998 * 112.85118 * 13.80402 * 11 10 7 13 13 C 1.53786 * 113.61554 * 145.00128 * 11 10 7 14 14 C 1.53787 * 87.08083 * 139.97668 * 13 11 10 15 15 H 1.09005 * 113.60781 * 89.19870 * 14 13 11 16 16 C 1.52991 * 113.61356 * 220.01743 * 14 13 11 17 17 N 1.46500 * 109.47016 * 185.00439 * 16 14 13 18 18 C 1.35316 * 125.86992 * 124.71385 * 17 16 14 19 19 C 1.35352 * 106.17551 * 179.90264 * 18 17 16 20 20 N 1.33774 * 106.49506 * 0.35548 * 19 18 17 21 21 N 1.28632 * 108.88620 * 359.76996 * 20 19 18 22 22 C 1.53776 * 87.08149 * 334.56702 * 14 13 11 23 23 C 1.33380 * 114.92301 * 359.97438 * 6 5 4 24 24 S 1.75881 * 125.20547 * 119.69313 * 4 2 1 25 25 H 0.96700 * 114.00311 * 60.00382 * 1 2 3 26 26 H 1.08999 * 109.47293 * 119.99810 * 2 1 3 27 27 H 1.48499 * 109.99670 * 298.67876 * 3 2 1 28 28 H 1.48497 * 110.00233 * 59.99845 * 3 2 1 29 29 H 1.07999 * 122.53444 * 359.97438 * 5 4 2 30 30 H 0.96999 * 119.99898 * 245.00071 * 10 7 6 31 31 H 1.08998 * 113.61344 * 254.53055 * 13 11 10 32 32 H 1.09002 * 113.61062 * 25.43028 * 13 11 10 33 33 H 1.08998 * 109.47478 * 305.00462 * 16 14 13 34 34 H 1.09001 * 109.47570 * 65.00273 * 16 14 13 35 35 H 1.08001 * 126.90851 * 0.02562 * 18 17 16 36 36 H 1.07999 * 126.74888 * 180.12086 * 19 18 17 37 37 H 1.08997 * 113.62067 * 270.87959 * 22 14 13 38 38 H 1.09007 * 113.61346 * 139.98091 * 22 14 13 39 39 H 1.08000 * 125.20139 * 180.02562 * 23 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0499 1.7566 0.0000 4 6 1.9314 -0.7103 -1.2304 5 6 1.6739 -1.9812 -1.5437 6 6 2.2439 -2.4171 -2.7274 7 16 2.0333 -4.0585 -3.3325 8 8 3.1356 -4.3138 -4.1922 9 8 1.7241 -4.8655 -2.2046 10 7 0.6830 -4.0579 -4.2913 11 6 0.6667 -3.2808 -5.5331 12 1 1.6591 -2.9475 -5.8369 13 6 -0.1332 -3.9461 -6.6657 14 6 -0.6556 -2.5425 -7.0148 15 1 -0.0260 -2.0065 -7.7252 16 6 -2.1368 -2.5174 -7.3969 17 7 -2.5078 -1.1663 -7.8251 18 6 -3.0783 -0.8379 -9.0073 19 6 -3.2493 0.5046 -8.9835 20 7 -2.7739 0.9271 -7.8066 21 7 -2.3420 -0.0870 -7.1436 22 6 -0.3914 -2.1649 -5.5477 23 6 2.9638 -1.5003 -3.3757 24 16 2.9405 0.0115 -2.4770 25 1 -0.3934 0.4416 -0.7651 26 1 1.7924 -0.5138 0.8900 27 1 1.5877 2.4585 -1.2243 28 1 1.5613 2.4680 1.2084 29 1 1.0667 -2.6214 -0.9209 30 1 -0.0971 -4.5720 -4.0306 31 1 0.4926 -4.3850 -7.4427 32 1 -0.9089 -4.6251 -6.3117 33 1 -2.3136 -3.2184 -8.2126 34 1 -2.7394 -2.8037 -6.5349 35 1 -3.3455 -1.5117 -9.8079 36 1 -3.6807 1.1150 -9.7630 37 1 -1.2376 -2.3570 -4.8882 38 1 0.0260 -1.1658 -5.4223 39 1 3.4788 -1.6605 -4.3113 There are 59 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 59 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_40_14927740_15065232.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 14:30:25 Heat of formation + Delta-G solvation = 66.743138 kcal Electronic energy + Delta-G solvation = -27221.155240 eV Core-core repulsion = 23194.985536 eV Total energy + Delta-G solvation = -4026.169704 eV No. of doubly occupied orbitals = 59 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 357.065 amu Computer time = 1.72 seconds Orbital eigenvalues (eV) -44.20056 -40.74598 -39.53855 -38.24712 -37.66534 -36.88857 -36.01746 -34.00757 -31.98149 -31.87362 -29.52910 -27.26340 -27.01363 -24.93944 -24.73474 -23.58422 -22.42044 -21.59333 -21.18413 -20.20979 -19.24032 -18.79846 -18.56324 -17.96273 -17.70761 -17.54918 -16.99723 -16.53905 -16.43659 -15.96529 -15.86017 -15.60665 -15.51931 -14.99276 -14.69481 -14.26549 -14.23172 -14.13226 -13.90110 -13.83906 -13.73724 -13.39410 -13.18327 -13.08006 -12.91820 -12.66571 -12.46005 -12.39063 -12.28820 -12.20031 -11.94505 -11.64922 -11.59426 -11.07690 -10.86980 -10.66267 -10.35718 -10.24476 -9.86416 -5.17118 -0.79081 -0.50043 0.28938 0.55860 0.61377 0.98161 1.12417 1.28389 1.46054 1.65017 1.81704 1.96609 2.67894 2.97027 3.13632 3.15223 3.25630 3.28659 3.38614 3.48912 3.56083 3.69509 3.76560 3.78569 3.85830 4.06264 4.09644 4.20020 4.26666 4.39689 4.42897 4.47885 4.51418 4.61043 4.66038 4.73711 4.81320 4.88084 5.04970 5.14567 5.19452 5.55781 5.74854 6.21937 7.55670 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.521 6.521 2 C -0.034 4.034 3 Si 0.650 3.350 4 C -0.226 4.226 5 C -0.042 4.042 6 C -0.684 4.684 7 S 2.707 3.293 8 O -0.953 6.953 9 O -0.951 6.951 10 N -1.102 6.102 11 C 0.125 3.875 12 H 0.119 0.881 13 C -0.130 4.130 14 C -0.125 4.125 15 H 0.104 0.896 16 C 0.125 3.875 17 N -0.291 5.291 18 C -0.052 4.052 19 C -0.051 4.051 20 N -0.274 5.274 21 N -0.080 5.080 22 C -0.142 4.142 23 C -0.088 4.088 24 S 0.164 5.836 25 H 0.378 0.622 26 H 0.130 0.870 27 H -0.239 1.239 28 H -0.232 1.232 29 H 0.157 0.843 30 H 0.421 0.579 31 H 0.086 0.914 32 H 0.097 0.903 33 H 0.110 0.890 34 H 0.102 0.898 35 H 0.191 0.809 36 H 0.190 0.810 37 H 0.095 0.905 38 H 0.081 0.919 39 H 0.184 0.816 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.796 -0.998 -4.921 5.084 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.328 6.328 2 C -0.146 4.146 3 Si 0.548 3.452 4 C -0.344 4.344 5 C -0.071 4.071 6 C -0.784 4.784 7 S 2.794 3.206 8 O -0.943 6.943 9 O -0.941 6.941 10 N -0.860 5.860 11 C 0.017 3.983 12 H 0.137 0.863 13 C -0.170 4.170 14 C -0.144 4.144 15 H 0.122 0.878 16 C 0.004 3.996 17 N -0.085 5.085 18 C -0.203 4.203 19 C -0.208 4.208 20 N -0.140 5.140 21 N -0.060 5.060 22 C -0.181 4.181 23 C -0.227 4.227 24 S 0.428 5.572 25 H 0.226 0.774 26 H 0.148 0.852 27 H -0.162 1.162 28 H -0.155 1.155 29 H 0.174 0.826 30 H 0.257 0.743 31 H 0.105 0.895 32 H 0.115 0.885 33 H 0.128 0.872 34 H 0.121 0.879 35 H 0.208 0.792 36 H 0.207 0.793 37 H 0.113 0.887 38 H 0.100 0.900 39 H 0.201 0.799 Dipole moment (debyes) X Y Z Total from point charges 0.934 0.983 -3.082 3.367 hybrid contribution -2.557 -1.592 -1.310 3.285 sum -1.623 -0.608 -4.392 4.722 Atomic orbital electron populations 1.86643 1.17011 1.79858 1.49283 1.24410 0.83957 1.10111 0.96115 0.95299 0.91621 0.74983 0.83279 1.25014 1.07758 0.98854 1.02750 1.19580 0.98414 0.94779 0.94336 1.29989 1.14267 1.26283 1.07868 1.01652 0.73005 0.72964 0.72953 1.93615 1.50820 1.83239 1.66579 1.93619 1.83978 1.65597 1.50918 1.55519 1.34643 1.61942 1.33896 1.22318 1.00033 0.92310 0.83604 0.86300 1.23358 0.99976 0.95485 0.98231 1.22700 0.94135 0.98937 0.98678 0.87751 1.22202 0.96842 0.77577 1.02983 1.47540 1.39598 1.09280 1.12079 1.23754 1.05713 0.98520 0.92302 1.23685 1.05838 0.93151 0.98149 1.75168 1.12701 1.21142 1.04958 1.78321 1.19634 0.87827 1.20229 1.23590 0.99709 0.99712 0.95087 1.25900 0.98238 0.95848 1.02759 1.84430 1.46630 1.12090 1.14072 0.77370 0.85229 1.16244 1.15520 0.82597 0.74312 0.89505 0.88482 0.87153 0.87939 0.79247 0.79332 0.88683 0.90046 0.79864 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 34. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.52 -0.38 12.86 -35.23 -0.45 -0.84 16 2 C -0.03 0.02 2.96 36.00 0.11 0.12 16 3 Si 0.65 -0.66 30.97 -169.99 -5.26 -5.92 16 4 C -0.23 0.02 5.72 -36.00 -0.21 -0.19 16 5 C -0.04 -0.02 9.56 -41.21 -0.39 -0.42 16 6 C -0.68 -0.03 5.86 -41.21 -0.24 -0.27 16 7 S 2.71 1.44 5.77 -107.50 -0.62 0.82 16 8 O -0.95 -2.92 17.16 -57.17 -0.98 -3.91 16 9 O -0.95 -3.62 17.63 -57.17 -1.01 -4.63 16 10 N -1.10 3.12 5.79 -4.19 -0.02 3.09 16 11 C 0.13 -0.46 4.43 -67.11 -0.30 -0.76 16 12 H 0.12 -0.47 7.77 -51.93 -0.40 -0.87 16 13 C -0.13 0.68 7.43 -25.91 -0.19 0.49 16 14 C -0.12 0.55 3.76 -89.81 -0.34 0.21 16 15 H 0.10 -0.37 8.14 -51.93 -0.42 -0.80 16 16 C 0.13 -0.57 6.29 -4.05 -0.03 -0.59 16 17 N -0.29 0.23 3.44 -61.27 -0.21 0.02 16 18 C -0.05 0.09 11.57 -17.04 -0.20 -0.11 16 19 C -0.05 -0.03 12.05 -17.73 -0.21 -0.24 16 20 N -0.27 -1.13 12.41 30.24 0.38 -0.76 16 21 N -0.08 -0.23 12.93 60.35 0.78 0.55 16 22 C -0.14 0.49 7.43 -25.92 -0.19 0.30 16 23 C -0.09 0.09 10.70 29.03 0.31 0.40 16 24 S 0.16 -0.18 20.58 -107.50 -2.21 -2.39 16 25 H 0.38 -0.76 8.70 45.56 0.40 -0.36 16 26 H 0.13 -0.17 7.96 -51.93 -0.41 -0.58 16 27 H -0.24 -0.17 7.11 56.52 0.40 0.23 16 28 H -0.23 -0.40 7.11 56.52 0.40 0.00 16 29 H 0.16 0.09 7.96 -52.49 -0.42 -0.33 16 30 H 0.42 -1.92 8.94 -34.47 -0.31 -2.23 16 31 H 0.09 -0.46 8.14 -51.93 -0.42 -0.88 16 32 H 0.10 -0.62 8.10 -51.93 -0.42 -1.04 16 33 H 0.11 -0.78 8.07 -51.93 -0.42 -1.20 16 34 H 0.10 -0.53 7.84 -51.93 -0.41 -0.94 16 35 H 0.19 -1.06 8.06 -52.49 -0.42 -1.48 16 36 H 0.19 -0.43 8.06 -52.49 -0.42 -0.85 16 37 H 0.09 -0.34 7.90 -51.93 -0.41 -0.75 16 38 H 0.08 -0.17 8.14 -51.93 -0.42 -0.60 16 39 H 0.18 -0.57 8.00 -52.49 -0.42 -0.99 16 LS Contribution 363.31 15.07 5.47 5.47 Total: 0.00 -12.66 363.31 -10.56 -23.22 By element: Atomic # 1 Polarization: -9.14 SS G_CDS: -4.54 Total: -13.67 kcal Atomic # 6 Polarization: 0.82 SS G_CDS: -1.88 Total: -1.06 kcal Atomic # 7 Polarization: 1.99 SS G_CDS: 0.92 Total: 2.91 kcal Atomic # 8 Polarization: -6.93 SS G_CDS: -2.44 Total: -9.37 kcal Atomic # 14 Polarization: -0.66 SS G_CDS: -5.26 Total: -5.92 kcal Atomic # 16 Polarization: 1.26 SS G_CDS: -2.83 Total: -1.57 kcal Total LS contribution 5.47 Total: 5.47 kcal Total: -12.66 -10.56 -23.22 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_40_14927740_15065232.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 89.966 kcal (2) G-P(sol) polarization free energy of solvation -12.665 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 77.302 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.558 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -23.223 kcal (6) G-S(sol) free energy of system = (1) + (5) 66.743 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.72 seconds