Wall clock time and date at job start Tue Mar 9 2021 14:30:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42903 * 1 3 3 Si 1.86305 * 109.46645 * 2 1 4 4 C 1.50696 * 109.47131 * 240.00209 * 2 1 3 5 5 C 1.33395 * 125.20224 * 299.99654 * 4 2 1 6 6 C 1.38424 * 114.91887 * 179.97438 * 5 4 2 7 7 S 1.76198 * 122.53538 * 180.02562 * 6 5 4 8 8 O 1.42098 * 106.40453 * 203.53718 * 7 6 5 9 9 O 1.42096 * 106.40638 * 336.46173 * 7 6 5 10 10 N 1.65603 * 107.21636 * 90.00106 * 7 6 5 11 11 C 1.46501 * 119.99963 * 64.99879 * 10 7 6 12 12 H 1.08998 * 112.85118 * 13.80402 * 11 10 7 13 13 C 1.53786 * 113.61554 * 145.00128 * 11 10 7 14 14 C 1.53787 * 87.08083 * 139.97668 * 13 11 10 15 15 H 1.09005 * 113.60781 * 89.19870 * 14 13 11 16 16 C 1.52991 * 113.61356 * 220.01743 * 14 13 11 17 17 N 1.46500 * 109.47016 * 185.00439 * 16 14 13 18 18 C 1.35316 * 125.86992 * 124.71385 * 17 16 14 19 19 C 1.35352 * 106.17551 * 179.90264 * 18 17 16 20 20 N 1.33774 * 106.49506 * 0.35548 * 19 18 17 21 21 N 1.28632 * 108.88620 * 359.76996 * 20 19 18 22 22 C 1.53776 * 87.08149 * 334.56702 * 14 13 11 23 23 C 1.33380 * 114.92301 * 359.97438 * 6 5 4 24 24 S 1.75881 * 125.20547 * 119.69313 * 4 2 1 25 25 H 0.96700 * 114.00311 * 60.00382 * 1 2 3 26 26 H 1.08999 * 109.47293 * 119.99810 * 2 1 3 27 27 H 1.48499 * 109.99670 * 298.67876 * 3 2 1 28 28 H 1.48497 * 110.00233 * 59.99845 * 3 2 1 29 29 H 1.07999 * 122.53444 * 359.97438 * 5 4 2 30 30 H 0.96999 * 119.99898 * 245.00071 * 10 7 6 31 31 H 1.08998 * 113.61344 * 254.53055 * 13 11 10 32 32 H 1.09002 * 113.61062 * 25.43028 * 13 11 10 33 33 H 1.08998 * 109.47478 * 305.00462 * 16 14 13 34 34 H 1.09001 * 109.47570 * 65.00273 * 16 14 13 35 35 H 1.08001 * 126.90851 * 0.02562 * 18 17 16 36 36 H 1.07999 * 126.74888 * 180.12086 * 19 18 17 37 37 H 1.08997 * 113.62067 * 270.87959 * 22 14 13 38 38 H 1.09007 * 113.61346 * 139.98091 * 22 14 13 39 39 H 1.08000 * 125.20139 * 180.02562 * 23 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0499 1.7566 0.0000 4 6 1.9314 -0.7103 -1.2304 5 6 1.6739 -1.9812 -1.5437 6 6 2.2439 -2.4171 -2.7274 7 16 2.0333 -4.0585 -3.3325 8 8 3.1356 -4.3138 -4.1922 9 8 1.7241 -4.8655 -2.2046 10 7 0.6830 -4.0579 -4.2913 11 6 0.6667 -3.2808 -5.5331 12 1 1.6591 -2.9475 -5.8369 13 6 -0.1332 -3.9461 -6.6657 14 6 -0.6556 -2.5425 -7.0148 15 1 -0.0260 -2.0065 -7.7252 16 6 -2.1368 -2.5174 -7.3969 17 7 -2.5078 -1.1663 -7.8251 18 6 -3.0783 -0.8379 -9.0073 19 6 -3.2493 0.5046 -8.9835 20 7 -2.7739 0.9271 -7.8066 21 7 -2.3420 -0.0870 -7.1436 22 6 -0.3914 -2.1649 -5.5477 23 6 2.9638 -1.5003 -3.3757 24 16 2.9405 0.0115 -2.4770 25 1 -0.3934 0.4416 -0.7651 26 1 1.7924 -0.5138 0.8900 27 1 1.5877 2.4585 -1.2243 28 1 1.5613 2.4680 1.2084 29 1 1.0667 -2.6214 -0.9209 30 1 -0.0971 -4.5720 -4.0306 31 1 0.4926 -4.3850 -7.4427 32 1 -0.9089 -4.6251 -6.3117 33 1 -2.3136 -3.2184 -8.2126 34 1 -2.7394 -2.8037 -6.5349 35 1 -3.3455 -1.5117 -9.8079 36 1 -3.6807 1.1150 -9.7630 37 1 -1.2376 -2.3570 -4.8882 38 1 0.0260 -1.1658 -5.4223 39 1 3.4788 -1.6605 -4.3113 There are 59 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 59 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_40_14927740_15065232.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 14:30:24 Heat of formation + Delta-G solvation = 60.076480 kcal Electronic energy + Delta-G solvation = -27221.444328 eV Core-core repulsion = 23194.985536 eV Total energy + Delta-G solvation = -4026.458792 eV No. of doubly occupied orbitals = 59 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 357.065 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -44.13795 -40.44977 -39.53070 -38.39884 -37.67813 -37.05016 -35.86242 -33.86557 -31.91299 -31.86280 -29.30383 -27.24544 -26.67279 -24.93147 -24.55820 -23.49995 -22.28963 -21.54449 -20.95614 -20.14996 -19.20681 -18.62352 -18.57213 -17.95676 -17.69482 -17.42535 -16.88869 -16.44292 -16.28189 -15.92376 -15.75629 -15.60791 -15.31624 -14.97214 -14.51268 -14.24771 -14.18249 -13.99723 -13.87217 -13.66332 -13.38849 -13.38431 -13.26552 -13.21811 -12.96702 -12.61959 -12.53883 -12.38549 -12.01653 -11.99033 -11.88377 -11.59433 -11.36498 -10.97630 -10.86650 -10.46263 -10.29721 -10.20775 -9.82952 -5.13439 -0.79682 -0.48072 0.32699 0.58043 0.71732 0.96823 1.15097 1.47101 1.53590 1.64903 1.81385 2.02551 2.65793 3.17173 3.28177 3.35005 3.48193 3.57842 3.60102 3.66097 3.74537 3.87055 3.98939 4.09121 4.20652 4.24424 4.34581 4.37367 4.40586 4.44752 4.61938 4.79692 4.82238 4.83917 4.87932 4.88876 5.03877 5.04155 5.10550 5.29301 5.46635 5.74889 6.02606 6.32031 7.57147 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.539 6.539 2 C -0.041 4.041 3 Si 0.719 3.281 4 C -0.232 4.232 5 C -0.055 4.055 6 C -0.691 4.691 7 S 2.724 3.276 8 O -0.980 6.980 9 O -0.988 6.988 10 N -1.089 6.089 11 C 0.116 3.884 12 H 0.121 0.879 13 C -0.118 4.118 14 C -0.118 4.118 15 H 0.096 0.904 16 C 0.116 3.884 17 N -0.285 5.285 18 C -0.036 4.036 19 C -0.074 4.074 20 N -0.325 5.325 21 N -0.116 5.116 22 C -0.144 4.144 23 C -0.088 4.088 24 S 0.184 5.816 25 H 0.388 0.612 26 H 0.137 0.863 27 H -0.260 1.260 28 H -0.271 1.271 29 H 0.151 0.849 30 H 0.431 0.569 31 H 0.094 0.906 32 H 0.114 0.886 33 H 0.145 0.855 34 H 0.111 0.889 35 H 0.233 0.767 36 H 0.207 0.793 37 H 0.096 0.904 38 H 0.063 0.937 39 H 0.204 0.796 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.106 -2.015 -6.542 6.934 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.347 6.347 2 C -0.152 4.152 3 Si 0.621 3.379 4 C -0.350 4.350 5 C -0.084 4.084 6 C -0.791 4.791 7 S 2.813 3.187 8 O -0.969 6.969 9 O -0.978 6.978 10 N -0.851 5.851 11 C 0.008 3.992 12 H 0.138 0.862 13 C -0.158 4.158 14 C -0.138 4.138 15 H 0.114 0.886 16 C -0.003 4.003 17 N -0.080 5.080 18 C -0.188 4.188 19 C -0.231 4.231 20 N -0.190 5.190 21 N -0.095 5.095 22 C -0.184 4.184 23 C -0.227 4.227 24 S 0.448 5.552 25 H 0.237 0.763 26 H 0.155 0.845 27 H -0.185 1.185 28 H -0.196 1.196 29 H 0.168 0.832 30 H 0.268 0.732 31 H 0.112 0.888 32 H 0.133 0.867 33 H 0.163 0.837 34 H 0.129 0.871 35 H 0.250 0.750 36 H 0.224 0.776 37 H 0.114 0.886 38 H 0.082 0.918 39 H 0.221 0.779 Dipole moment (debyes) X Y Z Total from point charges 0.633 -0.066 -4.692 4.735 hybrid contribution -2.513 -1.248 -0.853 2.932 sum -1.879 -1.314 -5.545 6.000 Atomic orbital electron populations 1.86610 1.17746 1.80232 1.50102 1.24604 0.83504 1.10737 0.96400 0.94500 0.90556 0.72989 0.79893 1.25092 1.07952 0.98805 1.03128 1.19631 0.98922 0.95129 0.94728 1.29842 1.15127 1.26098 1.08076 1.00854 0.73009 0.72653 0.72211 1.93575 1.52448 1.83877 1.67043 1.93565 1.84594 1.67104 1.52568 1.55231 1.34017 1.62102 1.33701 1.22534 1.00426 0.92584 0.83607 0.86165 1.23348 0.99994 0.95127 0.97320 1.22594 0.94371 0.99290 0.97532 0.88586 1.22595 0.96536 0.76382 1.04815 1.47869 1.38448 1.09649 1.12019 1.24400 1.03592 0.98311 0.92474 1.24189 1.06337 0.94772 0.97826 1.75092 1.14472 1.22681 1.06799 1.78236 1.21280 0.88741 1.21283 1.23589 0.99763 0.98811 0.96202 1.26214 0.97600 0.95610 1.03309 1.84348 1.45884 1.11629 1.13323 0.76256 0.84542 1.18529 1.19625 0.83157 0.73156 0.88758 0.86723 0.83667 0.87112 0.75034 0.77613 0.88581 0.91811 0.77925 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.54 -1.30 12.86 -148.98 -1.92 -3.21 16 2 C -0.04 0.01 2.96 71.23 0.21 0.22 16 3 Si 0.72 -1.01 30.97 68.60 2.12 1.11 16 4 C -0.23 -0.10 5.72 24.59 0.14 0.04 16 5 C -0.06 -0.12 9.56 21.22 0.20 0.08 16 6 C -0.69 -0.58 5.86 21.21 0.12 -0.45 16 7 S 2.72 5.16 5.77 -56.49 -0.33 4.83 16 8 O -0.98 -6.58 17.16 -128.00 -2.20 -8.78 16 9 O -0.99 -8.86 17.63 -128.00 -2.26 -11.12 16 10 N -1.09 6.09 5.79 -167.18 -0.97 5.12 16 11 C 0.12 -0.89 4.43 45.52 0.20 -0.69 16 12 H 0.12 -0.96 7.77 -2.39 -0.02 -0.98 16 13 C -0.12 1.42 7.43 31.12 0.23 1.65 16 14 C -0.12 1.15 3.76 -10.27 -0.04 1.11 16 15 H 0.10 -0.73 8.14 -2.38 -0.02 -0.75 16 16 C 0.12 -1.26 6.29 86.38 0.54 -0.72 16 17 N -0.29 0.68 3.44 -347.74 -1.20 -0.52 16 18 C -0.04 0.18 11.57 83.49 0.97 1.14 16 19 C -0.07 -0.09 12.05 83.73 1.01 0.92 16 20 N -0.33 -3.13 12.41 -58.25 -0.72 -3.85 16 21 N -0.12 -0.76 12.93 37.02 0.48 -0.28 16 22 C -0.14 0.97 7.43 31.12 0.23 1.20 16 23 C -0.09 0.16 10.70 66.72 0.71 0.87 16 24 S 0.18 -0.38 20.58 -56.49 -1.16 -1.55 16 25 H 0.39 -1.15 8.70 -74.06 -0.64 -1.80 16 26 H 0.14 -0.27 7.96 -2.39 -0.02 -0.29 16 27 H -0.26 -0.53 7.11 99.48 0.71 0.18 16 28 H -0.27 -1.33 7.11 99.48 0.71 -0.63 16 29 H 0.15 0.42 7.96 -2.91 -0.02 0.40 16 30 H 0.43 -4.01 8.94 -96.75 -0.87 -4.88 16 31 H 0.09 -1.20 8.14 -2.39 -0.02 -1.22 16 32 H 0.11 -1.76 8.10 -2.39 -0.02 -1.77 16 33 H 0.15 -2.58 8.07 -2.39 -0.02 -2.60 16 34 H 0.11 -1.34 7.84 -2.39 -0.02 -1.36 16 35 H 0.23 -3.43 8.06 -2.91 -0.02 -3.45 16 36 H 0.21 -0.94 8.06 -2.91 -0.02 -0.96 16 37 H 0.10 -0.67 7.90 -2.39 -0.02 -0.69 16 38 H 0.06 -0.19 8.14 -2.38 -0.02 -0.21 16 39 H 0.20 -1.32 8.00 -2.91 -0.02 -1.35 16 Total: 0.00 -31.23 363.31 -3.96 -35.20 By element: Atomic # 1 Polarization: -21.99 SS G_CDS: -0.36 Total: -22.35 kcal Atomic # 6 Polarization: 0.85 SS G_CDS: 4.54 Total: 5.39 kcal Atomic # 7 Polarization: 2.88 SS G_CDS: -2.41 Total: 0.47 kcal Atomic # 8 Polarization: -16.74 SS G_CDS: -6.37 Total: -23.11 kcal Atomic # 14 Polarization: -1.01 SS G_CDS: 2.12 Total: 1.11 kcal Atomic # 16 Polarization: 4.77 SS G_CDS: -1.49 Total: 3.28 kcal Total: -31.23 -3.96 -35.20 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_40_14927740_15065232.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 95.276 kcal (2) G-P(sol) polarization free energy of solvation -31.235 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 64.041 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.965 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.199 kcal (6) G-S(sol) free energy of system = (1) + (5) 60.076 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds