Wall clock time and date at job start Tue Mar 9 2021 14:30:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42898 * 1 3 3 Si 1.86302 * 109.47279 * 2 1 4 4 C 1.50705 * 109.47185 * 240.00135 * 2 1 3 5 5 C 1.33385 * 125.20296 * 300.28619 * 4 2 1 6 6 C 1.38421 * 114.92140 * 180.20745 * 5 4 2 7 7 S 1.76205 * 122.54044 * 179.76165 * 6 5 4 8 8 O 1.42100 * 106.40160 * 156.19800 * 7 6 5 9 9 O 1.42096 * 106.40086 * 23.27856 * 7 6 5 10 10 N 1.65603 * 107.21792 * 269.73745 * 7 6 5 11 11 C 1.46499 * 119.99966 * 64.99779 * 10 7 6 12 12 C 1.53002 * 109.47138 * 164.99905 * 11 10 7 13 13 H 1.09002 * 109.47067 * 305.00373 * 12 11 10 14 14 C 1.53005 * 109.46982 * 65.00025 * 12 11 10 15 15 C 1.52999 * 109.47159 * 179.97438 * 14 12 11 16 16 C 1.52997 * 109.47317 * 300.00546 * 15 14 12 17 17 H 1.09002 * 109.47153 * 299.99641 * 16 15 14 18 18 C 1.53002 * 109.46817 * 179.97438 * 16 15 14 19 19 O 1.42894 * 109.47240 * 64.99822 * 18 16 15 20 20 C 1.53000 * 109.47060 * 59.99960 * 16 15 14 21 21 C 1.52997 * 109.47143 * 185.00355 * 12 11 10 22 22 C 1.33387 * 114.91935 * 359.49657 * 6 5 4 23 23 S 1.75886 * 109.59650 * 0.26687 * 22 6 5 24 24 H 0.96699 * 114.00049 * 299.99955 * 1 2 3 25 25 H 1.08998 * 109.46981 * 120.00333 * 2 1 3 26 26 H 1.48496 * 110.00101 * 300.00094 * 3 2 1 27 27 H 1.48507 * 109.99738 * 61.31953 * 3 2 1 28 28 H 1.07999 * 122.54195 * 359.97173 * 5 4 2 29 29 H 0.96996 * 120.00126 * 245.00521 * 10 7 6 30 30 H 1.09000 * 109.46747 * 45.00063 * 11 10 7 31 31 H 1.09000 * 109.47411 * 285.00051 * 11 10 7 32 32 H 1.09000 * 109.47360 * 300.00293 * 14 12 11 33 33 H 1.09002 * 109.46935 * 60.00267 * 14 12 11 34 34 H 1.08996 * 109.46929 * 179.97438 * 15 14 12 35 35 H 1.09002 * 109.46716 * 60.00455 * 15 14 12 36 36 H 1.09008 * 109.46873 * 184.99985 * 18 16 15 37 37 H 1.08997 * 109.47047 * 304.99674 * 18 16 15 38 38 H 0.96697 * 113.99918 * 179.97438 * 19 18 16 39 39 H 1.08992 * 109.47399 * 59.99823 * 20 16 15 40 40 H 1.09004 * 109.46724 * 180.02562 * 20 16 15 41 41 H 1.08993 * 109.47194 * 59.99677 * 21 12 11 42 42 H 1.09002 * 109.46695 * 299.99691 * 21 12 11 43 43 H 1.08001 * 125.20196 * 180.25008 * 22 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0500 1.7565 0.0000 4 6 1.9313 -0.7104 -1.2305 5 6 1.6694 -1.9795 -1.5465 6 6 2.2446 -2.4174 -2.7269 7 16 2.0351 -4.0591 -3.3315 8 8 2.2490 -4.0002 -4.7351 9 8 0.8367 -4.5517 -2.7480 10 7 3.2682 -4.9721 -2.7084 11 6 3.3545 -5.1981 -1.2635 12 6 4.3258 -6.3468 -0.9841 13 1 4.0161 -7.2290 -1.5444 14 6 5.7360 -5.9383 -1.4148 15 6 6.7075 -7.0866 -1.1348 16 6 6.7033 -7.4049 0.3617 17 1 7.0129 -6.5224 0.9217 18 6 7.6743 -8.5537 0.6415 19 8 9.0079 -8.1323 0.3483 20 6 5.2931 -7.8134 0.7923 21 6 4.3217 -6.6655 0.5123 22 6 2.9650 -1.5007 -3.3750 23 16 2.9464 0.0095 -2.4735 24 1 -0.3933 0.4417 0.7650 25 1 1.7923 -0.5139 0.8899 26 1 1.5615 2.4679 -1.2084 27 1 1.5879 2.4585 1.2243 28 1 1.0582 -2.6184 -0.9263 29 1 3.9335 -5.3571 -3.3001 30 1 2.3682 -5.4540 -0.8764 31 1 3.7128 -4.2922 -0.7747 32 1 5.7389 -5.7112 -2.4809 33 1 6.0458 -5.0561 -0.8545 34 1 7.7120 -6.7958 -1.4420 35 1 6.3979 -7.9691 -1.6948 36 1 7.6061 -8.8396 1.6912 37 1 7.4171 -9.4076 0.0149 38 1 9.6781 -8.8118 0.5034 39 1 4.9835 -8.6958 0.2323 40 1 5.2901 -8.0397 1.8586 41 1 3.3171 -6.9565 0.8190 42 1 4.6315 -5.7833 1.0725 43 1 3.4810 -1.6612 -4.3100 There are 59 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 59 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_40_14939086_15065232.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 14:30:45 Heat of formation + Delta-G solvation = -135.637071 kcal Electronic energy + Delta-G solvation = -26752.629677 eV Core-core repulsion = 22824.420452 eV Total energy + Delta-G solvation = -3928.209225 eV No. of doubly occupied orbitals = 59 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 348.094 amu Computer time = 1.74 seconds Orbital eigenvalues (eV) -40.34507 -39.41913 -38.19945 -37.82458 -37.69356 -36.79033 -36.03062 -32.47857 -31.97998 -31.79106 -27.85281 -27.22682 -24.92360 -24.67087 -23.71903 -21.74550 -21.17891 -20.85891 -20.08834 -19.13120 -18.59660 -18.41728 -18.23390 -17.77685 -17.08838 -16.61661 -16.29119 -16.06353 -15.82383 -15.48005 -15.36755 -14.97142 -14.82447 -14.46187 -14.29777 -14.19996 -14.12060 -13.94536 -13.75811 -13.30846 -13.17189 -13.08041 -12.99997 -12.90199 -12.84297 -12.60508 -12.42977 -12.34874 -12.13255 -12.02692 -11.60448 -11.48856 -11.20592 -11.13071 -10.87563 -10.76927 -10.55808 -10.15838 -9.80475 -5.21896 -0.69433 -0.44568 0.31847 0.58528 0.95710 1.16600 1.43201 1.78046 2.11130 2.77849 3.10850 3.16533 3.34068 3.53701 3.63157 3.66871 3.68622 3.85983 3.98224 4.01970 4.16389 4.18822 4.28570 4.32869 4.37655 4.40233 4.43498 4.49535 4.57664 4.60236 4.65356 4.68211 4.80776 4.91614 4.92935 5.02391 5.06695 5.09655 5.11957 5.17399 5.24592 5.38841 5.47095 5.89059 6.26353 6.65107 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.530 6.530 2 C -0.034 4.034 3 Si 0.647 3.353 4 C -0.184 4.184 5 C -0.045 4.045 6 C -0.686 4.686 7 S 2.710 3.290 8 O -0.956 6.956 9 O -0.949 6.949 10 N -1.114 6.114 11 C 0.119 3.881 12 C -0.095 4.095 13 H 0.082 0.918 14 C -0.116 4.116 15 C -0.111 4.111 16 C -0.088 4.088 17 H 0.078 0.922 18 C 0.078 3.922 19 O -0.574 6.574 20 C -0.113 4.113 21 C -0.112 4.112 22 C -0.084 4.084 23 S 0.166 5.834 24 H 0.384 0.616 25 H 0.089 0.911 26 H -0.235 1.235 27 H -0.236 1.236 28 H 0.156 0.844 29 H 0.419 0.581 30 H 0.083 0.917 31 H 0.068 0.932 32 H 0.064 0.936 33 H 0.066 0.934 34 H 0.071 0.929 35 H 0.060 0.940 36 H 0.045 0.955 37 H 0.045 0.955 38 H 0.380 0.620 39 H 0.066 0.934 40 H 0.066 0.934 41 H 0.070 0.930 42 H 0.068 0.932 43 H 0.187 0.813 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.410 -0.364 5.018 7.388 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.338 6.338 2 C -0.146 4.146 3 Si 0.545 3.455 4 C -0.301 4.301 5 C -0.074 4.074 6 C -0.786 4.786 7 S 2.797 3.203 8 O -0.947 6.947 9 O -0.939 6.939 10 N -0.876 5.876 11 C -0.007 4.007 12 C -0.115 4.115 13 H 0.100 0.900 14 C -0.154 4.154 15 C -0.149 4.149 16 C -0.106 4.106 17 H 0.096 0.904 18 C 0.000 4.000 19 O -0.379 6.379 20 C -0.151 4.151 21 C -0.151 4.151 22 C -0.223 4.223 23 S 0.430 5.570 24 H 0.233 0.767 25 H 0.107 0.893 26 H -0.159 1.159 27 H -0.160 1.160 28 H 0.173 0.827 29 H 0.255 0.745 30 H 0.101 0.899 31 H 0.086 0.914 32 H 0.082 0.918 33 H 0.085 0.915 34 H 0.089 0.911 35 H 0.079 0.921 36 H 0.063 0.937 37 H 0.063 0.937 38 H 0.227 0.773 39 H 0.084 0.916 40 H 0.085 0.915 41 H 0.089 0.911 42 H 0.086 0.914 43 H 0.204 0.796 Dipole moment (debyes) X Y Z Total from point charges 4.797 2.004 3.696 6.379 hybrid contribution -0.787 -1.609 1.022 2.062 sum 4.010 0.394 4.718 6.204 Atomic orbital electron populations 1.86624 1.17149 1.80023 1.50028 1.24023 0.84721 1.09997 0.95902 0.95410 0.91541 0.75251 0.83283 1.23786 1.07232 0.97739 1.01338 1.19582 0.97863 0.95405 0.94510 1.30011 1.14219 1.25996 1.08350 1.01561 0.73127 0.72783 0.72878 1.93612 1.85600 1.86876 1.28572 1.93604 1.43304 1.78153 1.78840 1.55535 1.48320 1.67784 1.15937 1.21439 1.01073 0.99173 0.79045 1.21399 0.94895 0.97876 0.97297 0.89977 1.21633 0.93850 0.98715 1.01206 1.21519 0.99839 0.98354 0.95143 1.21171 0.93770 0.98310 0.97398 0.90387 1.22251 0.82539 0.96502 0.98713 1.86468 1.16742 1.43874 1.90842 1.21498 0.93677 0.98514 1.01384 1.21504 0.99819 0.98906 0.94830 1.25902 0.98443 0.95878 1.02107 1.84340 1.46363 1.12768 1.13578 0.76720 0.89318 1.15913 1.15963 0.82653 0.74492 0.89908 0.91372 0.91760 0.91487 0.91058 0.92098 0.93709 0.93685 0.77309 0.91573 0.91504 0.91131 0.91350 0.79620 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 34. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.53 -0.41 12.83 -35.23 -0.45 -0.86 16 2 C -0.03 0.02 2.96 36.01 0.11 0.13 16 3 Si 0.65 -0.85 30.97 -169.99 -5.26 -6.11 16 4 C -0.18 -0.16 5.76 -36.00 -0.21 -0.37 16 5 C -0.04 -0.07 9.56 -41.21 -0.39 -0.46 16 6 C -0.69 -0.75 5.86 -41.21 -0.24 -0.99 16 7 S 2.71 4.57 5.80 -107.50 -0.62 3.95 16 8 O -0.96 -4.14 17.64 -57.17 -1.01 -5.14 16 9 O -0.95 -4.63 17.10 -57.17 -0.98 -5.61 16 10 N -1.11 1.65 5.88 -10.61 -0.06 1.58 16 11 C 0.12 -0.26 5.61 -4.04 -0.02 -0.28 16 12 C -0.09 0.24 2.30 -90.62 -0.21 0.03 16 13 H 0.08 -0.18 8.14 -51.93 -0.42 -0.60 16 14 C -0.12 0.27 5.08 -26.73 -0.14 0.13 16 15 C -0.11 0.13 5.10 -26.73 -0.14 0.00 16 16 C -0.09 0.12 2.43 -90.62 -0.22 -0.10 16 17 H 0.08 -0.03 8.14 -51.93 -0.42 -0.45 16 18 C 0.08 -0.09 6.43 37.16 0.24 0.15 16 19 O -0.57 -0.05 13.20 -35.23 -0.46 -0.51 16 20 C -0.11 0.27 5.20 -26.75 -0.14 0.13 16 21 C -0.11 0.31 5.20 -26.75 -0.14 0.17 16 22 C -0.08 0.00 10.70 29.04 0.31 0.31 16 23 S 0.17 -0.04 20.58 -107.50 -2.21 -2.25 16 24 H 0.38 -1.35 8.74 45.56 0.40 -0.95 16 25 H 0.09 -0.26 7.96 -51.93 -0.41 -0.67 16 26 H -0.24 -0.43 7.11 56.52 0.40 -0.02 16 27 H -0.24 -0.01 7.11 56.52 0.40 0.39 16 28 H 0.16 0.16 7.96 -52.49 -0.42 -0.26 16 29 H 0.42 -1.23 7.41 -34.47 -0.26 -1.49 16 30 H 0.08 -0.15 7.75 -51.93 -0.40 -0.56 16 31 H 0.07 -0.23 8.14 -51.93 -0.42 -0.65 16 32 H 0.06 -0.18 6.90 -51.93 -0.36 -0.54 16 33 H 0.07 -0.14 8.14 -51.93 -0.42 -0.56 16 34 H 0.07 0.02 7.82 -51.93 -0.41 -0.39 16 35 H 0.06 -0.07 8.14 -51.93 -0.42 -0.49 16 36 H 0.04 -0.08 8.14 -51.92 -0.42 -0.51 16 37 H 0.04 -0.08 8.14 -51.93 -0.42 -0.50 16 38 H 0.38 -1.46 9.12 45.56 0.42 -1.04 16 39 H 0.07 -0.15 8.14 -51.93 -0.42 -0.57 16 40 H 0.07 -0.17 8.14 -51.93 -0.42 -0.60 16 41 H 0.07 -0.21 8.14 -51.93 -0.42 -0.63 16 42 H 0.07 -0.20 8.14 -51.93 -0.42 -0.62 16 43 H 0.19 -0.39 8.00 -52.49 -0.42 -0.81 16 LS Contribution 371.60 15.07 5.60 5.60 Total: 0.00 -10.70 371.60 -12.36 -23.06 By element: Atomic # 1 Polarization: -6.82 SS G_CDS: -5.71 Total: -12.53 kcal Atomic # 6 Polarization: 0.02 SS G_CDS: -1.19 Total: -1.17 kcal Atomic # 7 Polarization: 1.65 SS G_CDS: -0.06 Total: 1.58 kcal Atomic # 8 Polarization: -9.23 SS G_CDS: -2.90 Total: -12.13 kcal Atomic # 14 Polarization: -0.85 SS G_CDS: -5.26 Total: -6.11 kcal Atomic # 16 Polarization: 4.53 SS G_CDS: -2.84 Total: 1.69 kcal Total LS contribution 5.60 Total: 5.60 kcal Total: -10.70 -12.36 -23.06 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_40_14939086_15065232.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -112.572 kcal (2) G-P(sol) polarization free energy of solvation -10.704 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -123.276 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.361 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -23.065 kcal (6) G-S(sol) free energy of system = (1) + (5) -135.637 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.74 seconds