Wall clock time and date at job start Tue Mar 9 2021 14:30:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42898 * 1 3 3 Si 1.86302 * 109.47279 * 2 1 4 4 C 1.50705 * 109.47185 * 240.00135 * 2 1 3 5 5 C 1.33385 * 125.20296 * 300.28619 * 4 2 1 6 6 C 1.38421 * 114.92140 * 180.20745 * 5 4 2 7 7 S 1.76205 * 122.54044 * 179.76165 * 6 5 4 8 8 O 1.42100 * 106.40160 * 156.19800 * 7 6 5 9 9 O 1.42096 * 106.40086 * 23.27856 * 7 6 5 10 10 N 1.65603 * 107.21792 * 269.73745 * 7 6 5 11 11 C 1.46499 * 119.99966 * 64.99779 * 10 7 6 12 12 C 1.53002 * 109.47138 * 164.99905 * 11 10 7 13 13 H 1.09002 * 109.47067 * 305.00373 * 12 11 10 14 14 C 1.53005 * 109.46982 * 65.00025 * 12 11 10 15 15 C 1.52999 * 109.47159 * 179.97438 * 14 12 11 16 16 C 1.52997 * 109.47317 * 300.00546 * 15 14 12 17 17 H 1.09002 * 109.47153 * 299.99641 * 16 15 14 18 18 C 1.53002 * 109.46817 * 179.97438 * 16 15 14 19 19 O 1.42894 * 109.47240 * 64.99822 * 18 16 15 20 20 C 1.53000 * 109.47060 * 59.99960 * 16 15 14 21 21 C 1.52997 * 109.47143 * 185.00355 * 12 11 10 22 22 C 1.33387 * 114.91935 * 359.49657 * 6 5 4 23 23 S 1.75886 * 109.59650 * 0.26687 * 22 6 5 24 24 H 0.96699 * 114.00049 * 299.99955 * 1 2 3 25 25 H 1.08998 * 109.46981 * 120.00333 * 2 1 3 26 26 H 1.48496 * 110.00101 * 300.00094 * 3 2 1 27 27 H 1.48507 * 109.99738 * 61.31953 * 3 2 1 28 28 H 1.07999 * 122.54195 * 359.97173 * 5 4 2 29 29 H 0.96996 * 120.00126 * 245.00521 * 10 7 6 30 30 H 1.09000 * 109.46747 * 45.00063 * 11 10 7 31 31 H 1.09000 * 109.47411 * 285.00051 * 11 10 7 32 32 H 1.09000 * 109.47360 * 300.00293 * 14 12 11 33 33 H 1.09002 * 109.46935 * 60.00267 * 14 12 11 34 34 H 1.08996 * 109.46929 * 179.97438 * 15 14 12 35 35 H 1.09002 * 109.46716 * 60.00455 * 15 14 12 36 36 H 1.09008 * 109.46873 * 184.99985 * 18 16 15 37 37 H 1.08997 * 109.47047 * 304.99674 * 18 16 15 38 38 H 0.96697 * 113.99918 * 179.97438 * 19 18 16 39 39 H 1.08992 * 109.47399 * 59.99823 * 20 16 15 40 40 H 1.09004 * 109.46724 * 180.02562 * 20 16 15 41 41 H 1.08993 * 109.47194 * 59.99677 * 21 12 11 42 42 H 1.09002 * 109.46695 * 299.99691 * 21 12 11 43 43 H 1.08001 * 125.20196 * 180.25008 * 22 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0500 1.7565 0.0000 4 6 1.9313 -0.7104 -1.2305 5 6 1.6694 -1.9795 -1.5465 6 6 2.2446 -2.4174 -2.7269 7 16 2.0351 -4.0591 -3.3315 8 8 2.2490 -4.0002 -4.7351 9 8 0.8367 -4.5517 -2.7480 10 7 3.2682 -4.9721 -2.7084 11 6 3.3545 -5.1981 -1.2635 12 6 4.3258 -6.3468 -0.9841 13 1 4.0161 -7.2290 -1.5444 14 6 5.7360 -5.9383 -1.4148 15 6 6.7075 -7.0866 -1.1348 16 6 6.7033 -7.4049 0.3617 17 1 7.0129 -6.5224 0.9217 18 6 7.6743 -8.5537 0.6415 19 8 9.0079 -8.1323 0.3483 20 6 5.2931 -7.8134 0.7923 21 6 4.3217 -6.6655 0.5123 22 6 2.9650 -1.5007 -3.3750 23 16 2.9464 0.0095 -2.4735 24 1 -0.3933 0.4417 0.7650 25 1 1.7923 -0.5139 0.8899 26 1 1.5615 2.4679 -1.2084 27 1 1.5879 2.4585 1.2243 28 1 1.0582 -2.6184 -0.9263 29 1 3.9335 -5.3571 -3.3001 30 1 2.3682 -5.4540 -0.8764 31 1 3.7128 -4.2922 -0.7747 32 1 5.7389 -5.7112 -2.4809 33 1 6.0458 -5.0561 -0.8545 34 1 7.7120 -6.7958 -1.4420 35 1 6.3979 -7.9691 -1.6948 36 1 7.6061 -8.8396 1.6912 37 1 7.4171 -9.4076 0.0149 38 1 9.6781 -8.8118 0.5034 39 1 4.9835 -8.6958 0.2323 40 1 5.2901 -8.0397 1.8586 41 1 3.3171 -6.9565 0.8190 42 1 4.6315 -5.7833 1.0725 43 1 3.4810 -1.6612 -4.3100 There are 59 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 59 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_40_14939086_15065232.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 14:30:45 Heat of formation + Delta-G solvation = -140.912156 kcal Electronic energy + Delta-G solvation = -26752.858422 eV Core-core repulsion = 22824.420452 eV Total energy + Delta-G solvation = -3928.437970 eV No. of doubly occupied orbitals = 59 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 348.094 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -40.19463 -39.42171 -38.42146 -37.75464 -37.67203 -37.03902 -35.94876 -32.36890 -31.97769 -31.62464 -27.73346 -27.20933 -24.91315 -24.57873 -23.55155 -21.59724 -21.20648 -20.71679 -20.13237 -19.13424 -18.56721 -18.50539 -18.16303 -17.81760 -17.08801 -16.49596 -16.25810 -16.06771 -15.74663 -15.48818 -15.26940 -14.85422 -14.69336 -14.42712 -14.29708 -14.16466 -14.10530 -13.93902 -13.69766 -13.36571 -13.28773 -13.23266 -13.01900 -12.91171 -12.75946 -12.68572 -12.44384 -12.25192 -11.96051 -11.88889 -11.64950 -11.33601 -11.06482 -10.98720 -10.76608 -10.70855 -10.45759 -10.15341 -9.80520 -5.12426 -0.78301 -0.47288 0.32908 0.58613 0.94596 1.19498 1.49609 1.83690 2.08400 2.67370 3.16635 3.32883 3.35880 3.65897 3.72541 3.79889 3.84757 3.92495 4.11587 4.16394 4.21788 4.34660 4.39334 4.47517 4.54422 4.56031 4.59026 4.65176 4.66551 4.74241 4.75395 4.83251 4.90353 4.96991 5.05878 5.07520 5.19114 5.23870 5.30076 5.32728 5.40588 5.52522 5.63075 6.04551 6.50567 6.90243 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.555 6.555 2 C -0.044 4.044 3 Si 0.716 3.284 4 C -0.196 4.196 5 C -0.059 4.059 6 C -0.693 4.693 7 S 2.727 3.273 8 O -0.986 6.986 9 O -0.985 6.985 10 N -1.102 6.102 11 C 0.114 3.886 12 C -0.089 4.089 13 H 0.080 0.920 14 C -0.115 4.115 15 C -0.109 4.109 16 C -0.088 4.088 17 H 0.068 0.932 18 C 0.074 3.926 19 O -0.595 6.595 20 C -0.110 4.110 21 C -0.112 4.112 22 C -0.087 4.087 23 S 0.185 5.815 24 H 0.400 0.600 25 H 0.116 0.884 26 H -0.281 1.281 27 H -0.253 1.253 28 H 0.154 0.846 29 H 0.427 0.573 30 H 0.080 0.920 31 H 0.083 0.917 32 H 0.069 0.931 33 H 0.067 0.933 34 H 0.054 0.946 35 H 0.060 0.940 36 H 0.051 0.949 37 H 0.050 0.950 38 H 0.394 0.606 39 H 0.066 0.934 40 H 0.071 0.929 41 H 0.074 0.926 42 H 0.072 0.928 43 H 0.205 0.795 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.008 -0.216 5.750 8.319 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.366 6.366 2 C -0.155 4.155 3 Si 0.618 3.382 4 C -0.313 4.313 5 C -0.087 4.087 6 C -0.793 4.793 7 S 2.816 3.184 8 O -0.976 6.976 9 O -0.975 6.975 10 N -0.866 5.866 11 C -0.012 4.012 12 C -0.109 4.109 13 H 0.098 0.902 14 C -0.152 4.152 15 C -0.146 4.146 16 C -0.106 4.106 17 H 0.086 0.914 18 C -0.003 4.003 19 O -0.403 6.403 20 C -0.147 4.147 21 C -0.151 4.151 22 C -0.226 4.226 23 S 0.449 5.551 24 H 0.252 0.748 25 H 0.133 0.867 26 H -0.208 1.208 27 H -0.177 1.177 28 H 0.172 0.828 29 H 0.265 0.735 30 H 0.098 0.902 31 H 0.101 0.899 32 H 0.088 0.912 33 H 0.086 0.914 34 H 0.073 0.927 35 H 0.078 0.922 36 H 0.070 0.930 37 H 0.068 0.932 38 H 0.244 0.756 39 H 0.085 0.915 40 H 0.089 0.911 41 H 0.093 0.907 42 H 0.091 0.909 43 H 0.222 0.778 Dipole moment (debyes) X Y Z Total from point charges 5.407 2.114 4.441 7.309 hybrid contribution -0.947 -1.612 0.811 2.038 sum 4.460 0.503 5.251 6.908 Atomic orbital electron populations 1.86576 1.18017 1.80566 1.51428 1.24276 0.84222 1.10638 0.96352 0.94647 0.90397 0.73328 0.79830 1.24089 1.07363 0.97814 1.02084 1.19664 0.98367 0.95851 0.94863 1.29824 1.15185 1.25632 1.08702 1.00720 0.72840 0.72907 0.71962 1.93565 1.86061 1.87433 1.30588 1.93555 1.45612 1.79089 1.79270 1.55239 1.47710 1.67178 1.16515 1.21592 1.01169 1.00063 0.78338 1.21341 0.94471 0.97570 0.97514 0.90188 1.21622 0.93681 0.98291 1.01627 1.21476 0.99179 0.98699 0.95292 1.21173 0.94423 0.97957 0.97094 0.91382 1.22335 0.82129 0.96646 0.99220 1.86428 1.17671 1.45208 1.91039 1.21472 0.93001 0.98637 1.01625 1.21515 0.99969 0.98982 0.94588 1.26216 0.97960 0.95792 1.02620 1.84275 1.45691 1.12202 1.12974 0.74844 0.86691 1.20767 1.17684 0.82817 0.73480 0.90195 0.89877 0.91195 0.91390 0.92672 0.92165 0.93040 0.93221 0.75647 0.91512 0.91077 0.90695 0.90908 0.77826 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.55 -0.77 12.83 -148.98 -1.91 -2.68 16 2 C -0.04 0.08 2.96 71.24 0.21 0.29 16 3 Si 0.72 -2.13 30.97 68.60 2.12 0.00 16 4 C -0.20 -0.29 5.76 24.59 0.14 -0.15 16 5 C -0.06 -0.18 9.56 21.21 0.20 0.02 16 6 C -0.69 -1.66 5.86 21.22 0.12 -1.53 16 7 S 2.73 11.07 5.80 -56.49 -0.33 10.75 16 8 O -0.99 -9.28 17.64 -128.00 -2.26 -11.53 16 9 O -0.99 -10.77 17.10 -128.00 -2.19 -12.96 16 10 N -1.10 3.21 5.88 -187.49 -1.10 2.11 16 11 C 0.11 -0.54 5.61 86.38 0.48 -0.05 16 12 C -0.09 0.49 2.30 -10.79 -0.02 0.46 16 13 H 0.08 -0.38 8.14 -2.39 -0.02 -0.40 16 14 C -0.11 0.55 5.08 30.60 0.16 0.71 16 15 C -0.11 0.24 5.10 30.59 0.16 0.39 16 16 C -0.09 0.23 2.43 -10.79 -0.03 0.20 16 17 H 0.07 -0.03 8.14 -2.39 -0.02 -0.05 16 18 C 0.07 -0.17 6.43 71.98 0.46 0.29 16 19 O -0.60 -0.28 13.20 -148.98 -1.97 -2.25 16 20 C -0.11 0.56 5.20 30.58 0.16 0.72 16 21 C -0.11 0.68 5.20 30.58 0.16 0.84 16 22 C -0.09 0.02 10.70 66.72 0.71 0.73 16 23 S 0.18 -0.16 20.58 -56.49 -1.16 -1.32 16 24 H 0.40 -2.93 8.74 -74.06 -0.65 -3.58 16 25 H 0.12 -0.84 7.96 -2.39 -0.02 -0.86 16 26 H -0.28 -1.27 7.11 99.48 0.71 -0.56 16 27 H -0.25 0.11 7.11 99.48 0.71 0.82 16 28 H 0.15 0.42 7.96 -2.91 -0.02 0.40 16 29 H 0.43 -2.57 7.41 -96.75 -0.72 -3.28 16 30 H 0.08 -0.29 7.75 -2.39 -0.02 -0.31 16 31 H 0.08 -0.62 8.14 -2.39 -0.02 -0.64 16 32 H 0.07 -0.42 6.90 -2.39 -0.02 -0.43 16 33 H 0.07 -0.32 8.14 -2.39 -0.02 -0.34 16 34 H 0.05 0.07 7.82 -2.39 -0.02 0.05 16 35 H 0.06 -0.13 8.14 -2.39 -0.02 -0.15 16 36 H 0.05 -0.20 8.14 -2.38 -0.02 -0.22 16 37 H 0.05 -0.17 8.14 -2.39 -0.02 -0.19 16 38 H 0.39 -2.94 9.12 -74.06 -0.68 -3.61 16 39 H 0.07 -0.34 8.14 -2.39 -0.02 -0.35 16 40 H 0.07 -0.41 8.14 -2.39 -0.02 -0.43 16 41 H 0.07 -0.49 8.14 -2.39 -0.02 -0.51 16 42 H 0.07 -0.49 8.14 -2.39 -0.02 -0.50 16 43 H 0.20 -0.96 8.00 -2.91 -0.02 -0.98 16 Total: 0.00 -24.30 371.60 -6.83 -31.13 By element: Atomic # 1 Polarization: -15.21 SS G_CDS: -0.96 Total: -16.16 kcal Atomic # 6 Polarization: 0.01 SS G_CDS: 2.92 Total: 2.92 kcal Atomic # 7 Polarization: 3.21 SS G_CDS: -1.10 Total: 2.11 kcal Atomic # 8 Polarization: -21.10 SS G_CDS: -8.32 Total: -29.42 kcal Atomic # 14 Polarization: -2.13 SS G_CDS: 2.12 Total: 0.00 kcal Atomic # 16 Polarization: 10.91 SS G_CDS: -1.49 Total: 9.42 kcal Total: -24.30 -6.83 -31.13 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_40_14939086_15065232.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -109.779 kcal (2) G-P(sol) polarization free energy of solvation -24.302 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -134.081 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.831 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -31.133 kcal (6) G-S(sol) free energy of system = (1) + (5) -140.912 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds