Wall clock time and date at job start Tue Mar 9 2021 14:31:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17401 * 1 3 3 C 1.47201 * 179.97438 * 2 1 4 4 O 1.42893 * 109.47631 * 304.35791 * 3 2 1 5 5 C 1.42894 * 114.00205 * 180.02562 * 4 3 2 6 6 H 1.08996 * 109.47625 * 330.00441 * 5 4 3 7 7 C 1.53002 * 109.46925 * 90.00433 * 5 4 3 8 8 C 1.53004 * 109.46939 * 180.02562 * 7 5 4 9 9 C 1.53004 * 109.46955 * 299.99634 * 8 7 5 10 10 H 1.08995 * 109.47244 * 300.00099 * 9 8 7 11 11 N 1.46498 * 109.46707 * 180.02562 * 9 8 7 12 12 S 1.65603 * 119.99995 * 97.41691 * 11 9 8 13 13 O 1.42103 * 106.40499 * 180.25772 * 12 11 9 14 14 O 1.42104 * 106.39983 * 313.17651 * 12 11 9 15 15 C 1.76196 * 107.22021 * 66.71613 * 12 11 9 16 16 C 1.33392 * 122.54030 * 166.39228 * 15 12 11 17 17 C 1.50697 * 125.19949 * 0.02562 * 16 15 12 18 18 O 1.42896 * 109.47461 * 39.75240 * 17 16 15 19 19 Si 1.86300 * 109.46759 * 159.75052 * 17 16 15 20 20 S 1.75877 * 109.59365 * 180.02562 * 16 15 12 21 21 C 1.75882 * 90.97205 * 359.97438 * 20 16 15 22 22 C 1.33386 * 109.59358 * 359.73112 * 21 20 16 23 23 C 1.53002 * 109.46998 * 60.00402 * 9 8 7 24 24 C 1.52993 * 109.46868 * 299.99982 * 23 9 8 25 25 H 4.38448 * 5.44497 * 179.97438 * 4 1 2 26 26 H 1.09004 * 109.46428 * 184.36048 * 3 2 1 27 27 H 1.09003 * 109.47441 * 64.36778 * 3 2 1 28 28 H 1.08997 * 109.47232 * 299.99723 * 7 5 4 29 29 H 1.08995 * 109.47371 * 59.99951 * 7 5 4 30 30 H 1.09002 * 109.46875 * 180.02562 * 8 7 5 31 31 H 1.08995 * 109.47226 * 59.99744 * 8 7 5 32 32 H 0.97005 * 120.00659 * 277.41119 * 11 9 8 33 33 H 1.09003 * 109.47459 * 279.74445 * 17 16 15 34 34 H 0.96700 * 113.99743 * 66.24069 * 18 17 16 35 35 H 1.48499 * 110.00173 * 58.68379 * 19 17 16 36 36 H 1.48507 * 110.00160 * 179.97438 * 19 17 16 37 37 H 1.08002 * 125.20673 * 180.02562 * 21 20 16 38 38 H 1.07999 * 122.54261 * 180.24179 * 22 21 20 39 39 H 1.08998 * 109.46819 * 179.97438 * 23 9 8 40 40 H 1.09005 * 109.46887 * 59.99952 * 23 9 8 41 41 H 1.09005 * 109.47342 * 299.99692 * 24 23 9 42 42 H 1.09000 * 109.46910 * 180.02562 * 24 23 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 8 3.1228 -0.7594 1.1121 5 6 4.5473 -0.8219 1.2055 6 1 4.9800 -0.7610 0.2070 7 6 5.0545 0.3464 2.0532 8 6 6.5799 0.2799 2.1527 9 6 6.9911 -1.0409 2.8066 10 1 6.5589 -1.1020 3.8052 11 7 8.4516 -1.1043 2.9023 12 16 9.2074 -0.6908 4.3166 13 8 10.6009 -0.8494 4.0883 14 8 8.6237 0.5336 4.7403 15 6 8.7598 -1.8979 5.5196 16 6 9.3950 -2.0180 6.6863 17 6 10.5536 -1.1659 7.1364 18 8 10.3282 0.1898 6.7450 19 14 10.7097 -1.2592 8.9905 20 16 8.6736 -3.3229 7.6191 21 6 7.5151 -3.6409 6.3345 22 6 7.7182 -2.7893 5.3281 23 6 6.4839 -2.2093 1.9588 24 6 4.9587 -2.1426 1.8593 25 1 -1.0499 0.0000 0.0004 26 1 3.0088 1.0256 0.0781 27 1 3.0096 -0.4437 -0.9265 28 1 4.7620 1.2873 1.5873 29 1 4.6219 0.2856 3.0518 30 1 6.9412 1.1120 2.7570 31 1 7.0121 0.3410 1.1540 32 1 8.9760 -1.3886 2.1374 33 1 11.4724 -1.5291 6.6757 34 1 9.5803 0.6091 7.1921 35 1 10.9127 -2.6683 9.4128 36 1 11.8493 -0.4235 9.4470 37 1 6.7525 -4.4053 6.3588 38 1 7.1183 -2.7975 4.4301 39 1 6.7773 -3.1501 2.4244 40 1 6.9163 -2.1481 0.9601 41 1 4.5263 -2.2038 2.8580 42 1 4.5973 -2.9752 1.2557 There are 60 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 60 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_40_14940688_14772022.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 14:31:06 Heat of formation + Delta-G solvation = -55.779456 kcal Electronic energy + Delta-G solvation = -28320.825320 eV Core-core repulsion = 24295.164319 eV Total energy + Delta-G solvation = -4025.661001 eV No. of doubly occupied orbitals = 60 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 358.079 amu Computer time = 1.77 seconds Orbital eigenvalues (eV) -40.62929 -39.68027 -38.53202 -37.87147 -37.62370 -36.56044 -35.00447 -33.76839 -32.02140 -31.82937 -29.51510 -27.61017 -27.57813 -24.58541 -23.87094 -23.23939 -21.71663 -21.40779 -20.17700 -19.37626 -19.27898 -18.38652 -17.98615 -17.82842 -17.51799 -17.10259 -16.60713 -16.53620 -16.29735 -15.84582 -15.47747 -15.42656 -15.21581 -14.97520 -14.49481 -14.34097 -14.11853 -14.05924 -13.95903 -13.81340 -13.36288 -13.02850 -12.89614 -12.83599 -12.78297 -12.68731 -12.57722 -12.33544 -12.26835 -12.10389 -11.83960 -11.75064 -11.57502 -11.38123 -11.28722 -11.03900 -10.67055 -10.37637 -10.19335 -9.83600 -5.25154 -0.60737 -0.52232 0.29675 0.59811 0.98154 1.09889 1.42656 1.53356 1.77310 1.86473 2.00954 2.81046 2.83407 3.14173 3.28576 3.40388 3.47154 3.58543 3.65756 3.84364 3.91192 3.95907 4.02694 4.03909 4.10595 4.15000 4.24160 4.27557 4.31945 4.34341 4.39198 4.53101 4.61853 4.72734 4.76887 4.87255 4.93626 4.99008 5.00434 5.03180 5.08514 5.21738 5.28488 5.87343 6.12991 6.30931 6.62707 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C -0.199 4.199 3 C 0.173 3.827 4 O -0.375 6.375 5 C 0.088 3.912 6 H 0.067 0.933 7 C -0.142 4.142 8 C -0.135 4.135 9 C 0.146 3.854 10 H 0.091 0.909 11 N -1.118 6.118 12 S 2.720 3.280 13 O -0.949 6.949 14 O -0.940 6.940 15 C -0.663 4.663 16 C -0.099 4.099 17 C -0.072 4.072 18 O -0.531 6.531 19 Si 0.674 3.326 20 S 0.158 5.842 21 C -0.208 4.208 22 C -0.093 4.093 23 C -0.127 4.127 24 C -0.116 4.116 25 H 0.222 0.778 26 H 0.075 0.925 27 H 0.074 0.926 28 H 0.072 0.928 29 H 0.077 0.923 30 H 0.085 0.915 31 H 0.072 0.928 32 H 0.420 0.580 33 H 0.145 0.855 34 H 0.391 0.609 35 H -0.232 1.232 36 H -0.225 1.225 37 H 0.176 0.824 38 H 0.153 0.847 39 H 0.079 0.921 40 H 0.078 0.922 41 H 0.077 0.923 42 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.694 -2.407 -0.105 4.411 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.199 4.199 3 C 0.097 3.903 4 O -0.295 6.295 5 C 0.030 3.970 6 H 0.085 0.915 7 C -0.180 4.180 8 C -0.174 4.174 9 C 0.039 3.961 10 H 0.109 0.891 11 N -0.877 5.877 12 S 2.804 3.196 13 O -0.939 6.939 14 O -0.930 6.930 15 C -0.760 4.760 16 C -0.220 4.220 17 C -0.184 4.184 18 O -0.338 6.338 19 Si 0.572 3.428 20 S 0.421 5.579 21 C -0.344 4.344 22 C -0.121 4.121 23 C -0.166 4.166 24 C -0.154 4.154 25 H 0.239 0.761 26 H 0.093 0.907 27 H 0.092 0.908 28 H 0.091 0.909 29 H 0.096 0.904 30 H 0.104 0.896 31 H 0.091 0.909 32 H 0.255 0.745 33 H 0.162 0.838 34 H 0.241 0.759 35 H -0.156 1.156 36 H -0.147 1.147 37 H 0.193 0.807 38 H 0.171 0.829 39 H 0.097 0.903 40 H 0.096 0.904 41 H 0.095 0.905 42 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -2.086 -2.759 2.097 4.045 hybrid contribution -0.469 -0.400 -2.244 2.327 sum -2.554 -3.159 -0.146 4.065 Atomic orbital electron populations 1.25047 0.95983 0.99426 0.98186 1.22514 0.93899 1.01464 1.02025 1.19116 0.84805 0.96423 0.89916 1.87986 1.21255 1.72719 1.47549 1.22209 0.80365 0.95409 0.98992 0.91512 1.22043 0.95219 0.98826 1.01935 1.22026 0.95342 0.97771 1.02276 1.20994 0.78418 0.95982 1.00716 0.89121 1.55787 1.15471 1.86129 1.30335 1.01500 0.72783 0.73385 0.71886 1.93590 1.29382 1.86346 1.84552 1.93578 1.78672 1.39378 1.81391 1.29934 1.08997 1.22078 1.15026 1.24998 1.00109 1.00512 0.96334 1.25095 0.96327 0.82937 1.14002 1.86565 1.55600 1.22267 1.69346 0.94726 0.89817 0.84249 0.74047 1.84509 1.25902 1.28249 1.19214 1.25900 1.04817 1.05775 0.97877 1.19866 0.96893 0.94573 1.00756 1.21904 0.95313 0.98098 1.01294 1.21559 0.94546 0.96706 1.02576 0.76101 0.90739 0.90785 0.90950 0.90419 0.89601 0.90884 0.74542 0.83776 0.75909 1.15567 1.14749 0.80700 0.82930 0.90266 0.90358 0.90467 0.90333 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 30. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -0.16 19.25 29.55 0.57 0.40 16 2 C -0.20 -0.40 13.73 -37.12 -0.51 -0.91 16 3 C 0.17 0.00 6.22 34.37 0.21 0.21 16 4 O -0.38 -0.40 9.95 -35.23 -0.35 -0.75 16 5 C 0.09 -0.13 2.61 -26.73 -0.07 -0.20 16 6 H 0.07 -0.18 7.79 -51.93 -0.40 -0.59 16 7 C -0.14 0.21 5.54 -26.73 -0.15 0.06 16 8 C -0.13 0.20 5.53 -26.73 -0.15 0.05 16 9 C 0.15 -0.30 1.52 -67.93 -0.10 -0.40 16 10 H 0.09 -0.21 6.35 -51.93 -0.33 -0.54 16 11 N -1.12 1.34 5.21 -4.89 -0.03 1.31 16 12 S 2.72 6.22 4.13 -107.50 -0.44 5.77 16 13 O -0.95 -5.33 17.19 -61.35 -1.05 -6.39 16 14 O -0.94 -3.88 16.27 -65.10 -1.06 -4.94 16 15 C -0.66 -0.81 5.71 -41.21 -0.24 -1.04 16 16 C -0.10 -0.11 5.78 -36.00 -0.21 -0.31 16 17 C -0.07 -0.07 2.40 36.00 0.09 0.02 16 18 O -0.53 -1.05 9.74 -59.20 -0.58 -1.63 16 19 Si 0.67 -0.76 31.08 -169.99 -5.28 -6.04 16 20 S 0.16 -0.09 20.85 -107.50 -2.24 -2.33 16 21 C -0.21 0.25 11.23 29.04 0.33 0.58 16 22 C -0.09 0.06 9.03 -41.21 -0.37 -0.31 16 23 C -0.13 0.46 5.22 -26.73 -0.14 0.32 16 24 C -0.12 0.29 5.57 -26.74 -0.15 0.14 16 25 H 0.22 -0.54 7.80 -54.10 -0.42 -0.96 16 26 H 0.07 -0.11 7.87 -51.93 -0.41 -0.52 16 27 H 0.07 -0.13 8.09 -51.93 -0.42 -0.55 16 28 H 0.07 -0.12 7.87 -51.93 -0.41 -0.53 16 29 H 0.08 -0.06 8.14 -51.93 -0.42 -0.49 16 30 H 0.09 0.00 7.91 -51.93 -0.41 -0.41 16 31 H 0.07 -0.17 8.14 -51.93 -0.42 -0.60 16 32 H 0.42 -1.24 8.86 -34.47 -0.31 -1.54 16 33 H 0.15 0.20 7.96 -51.93 -0.41 -0.21 16 34 H 0.39 -0.66 8.50 45.56 0.39 -0.27 16 35 H -0.23 -0.02 7.11 56.52 0.40 0.38 16 36 H -0.22 -0.26 7.11 56.52 0.40 0.14 16 37 H 0.18 -0.64 8.06 -52.49 -0.42 -1.06 16 38 H 0.15 -0.45 4.45 -52.49 -0.23 -0.68 16 39 H 0.08 -0.35 7.20 -51.93 -0.37 -0.73 16 40 H 0.08 -0.33 8.14 -51.93 -0.42 -0.75 16 41 H 0.08 -0.18 8.14 -51.93 -0.42 -0.60 16 42 H 0.08 -0.20 8.14 -51.93 -0.42 -0.62 16 LS Contribution 367.37 15.07 5.54 5.54 Total: 0.00 -10.12 367.37 -11.86 -21.98 By element: Atomic # 1 Polarization: -5.64 SS G_CDS: -5.48 Total: -11.12 kcal Atomic # 6 Polarization: -0.52 SS G_CDS: -0.89 Total: -1.41 kcal Atomic # 7 Polarization: 1.34 SS G_CDS: -0.03 Total: 1.31 kcal Atomic # 8 Polarization: -10.66 SS G_CDS: -3.04 Total: -13.70 kcal Atomic # 14 Polarization: -0.76 SS G_CDS: -5.28 Total: -6.04 kcal Atomic # 16 Polarization: 6.13 SS G_CDS: -2.68 Total: 3.45 kcal Total LS contribution 5.54 Total: 5.54 kcal Total: -10.12 -11.86 -21.98 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_40_14940688_14772022.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.800 kcal (2) G-P(sol) polarization free energy of solvation -10.118 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.918 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.862 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -21.980 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.779 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.77 seconds