Wall clock time and date at job start Tue Mar 9 2021 14:31:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17393 * 1 3 3 C 1.47206 * 179.97438 * 2 1 4 4 O 1.42896 * 109.46934 * 130.25856 * 3 2 1 5 5 C 1.42898 * 113.99967 * 179.97438 * 4 3 2 6 6 H 1.08996 * 109.47195 * 30.00481 * 5 4 3 7 7 C 1.53005 * 109.47129 * 150.00227 * 5 4 3 8 8 C 1.52999 * 109.47330 * 180.02562 * 7 5 4 9 9 C 1.52999 * 109.46738 * 299.99895 * 8 7 5 10 10 H 1.09009 * 109.47495 * 300.00085 * 9 8 7 11 11 N 1.46506 * 109.47089 * 180.02562 * 9 8 7 12 12 S 1.65595 * 120.00129 * 145.00115 * 11 9 8 13 13 O 1.42096 * 106.40302 * 178.53775 * 12 11 9 14 14 O 1.42098 * 106.40331 * 311.45689 * 12 11 9 15 15 C 1.76204 * 107.21984 * 64.99762 * 12 11 9 16 16 C 1.33395 * 122.53562 * 90.02510 * 15 12 11 17 17 S 1.75880 * 109.58841 * 180.02562 * 16 15 12 18 18 C 1.75882 * 90.97587 * 359.97438 * 17 16 15 19 19 C 1.50699 * 125.20713 * 180.02562 * 18 17 16 20 20 O 1.42892 * 109.47102 * 244.97526 * 19 18 17 21 21 Si 1.86298 * 109.46886 * 4.97878 * 19 18 17 22 22 C 1.33394 * 109.59114 * 359.73015 * 18 17 16 23 23 C 1.53003 * 109.47295 * 60.00315 * 9 8 7 24 24 C 1.52999 * 109.46970 * 299.99543 * 23 9 8 25 25 H 4.38443 * 5.44391 * 180.02562 * 4 1 2 26 26 H 1.08996 * 109.47366 * 250.26237 * 3 2 1 27 27 H 1.09000 * 109.47090 * 10.26048 * 3 2 1 28 28 H 1.09003 * 109.46826 * 300.00300 * 7 5 4 29 29 H 1.09004 * 109.47197 * 60.00085 * 7 5 4 30 30 H 1.08996 * 109.47466 * 59.99965 * 8 7 5 31 31 H 1.08997 * 109.47222 * 180.02562 * 8 7 5 32 32 H 0.96995 * 119.99518 * 324.99652 * 11 9 8 33 33 H 1.07994 * 125.20254 * 359.97438 * 16 15 12 34 34 H 1.08996 * 109.46797 * 124.97421 * 19 18 17 35 35 H 0.96700 * 114.00250 * 59.99889 * 20 19 18 36 36 H 1.48506 * 110.00145 * 180.02562 * 21 19 18 37 37 H 1.48503 * 109.99780 * 301.31755 * 21 19 18 38 38 H 1.07997 * 122.54244 * 180.23853 * 22 18 17 39 39 H 1.08992 * 109.47289 * 59.99380 * 23 9 8 40 40 H 1.09000 * 109.47214 * 180.02562 * 23 9 8 41 41 H 1.09004 * 109.47283 * 300.00329 * 24 23 9 42 42 H 1.08997 * 109.47222 * 179.97438 * 24 23 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1739 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 8 3.1219 0.8715 -1.0281 5 6 4.5464 0.9455 -1.1139 6 1 4.9795 -0.0010 -0.7906 7 6 4.9563 1.2261 -2.5611 8 6 6.4815 1.3047 -2.6531 9 6 6.9892 2.4318 -1.7515 10 1 6.5564 3.3786 -2.0747 11 7 8.4497 2.5076 -1.8400 12 16 9.2092 3.9767 -1.7564 13 8 10.6031 3.7129 -1.8363 14 8 8.5271 4.8332 -2.6622 15 6 8.9170 4.6239 -0.1438 16 6 9.7324 4.3838 0.8843 17 16 9.1203 5.1893 2.3230 18 6 7.7515 5.8263 1.4207 19 6 6.6634 6.6978 1.9930 20 8 5.4183 5.9983 1.9451 21 14 7.0713 7.1196 3.7612 22 6 7.8273 5.4252 0.1507 23 6 6.5794 2.1512 -0.3043 24 6 5.0542 2.0726 -0.2124 25 1 -1.0502 -0.0001 0.0004 26 1 3.0092 0.3479 0.9672 27 1 3.0098 -1.0104 -0.1831 28 1 4.5948 0.4230 -3.2033 29 1 4.5231 2.1727 -2.8844 30 1 6.9143 0.3580 -2.3299 31 1 6.7735 1.5051 -3.6839 32 1 8.9716 1.6971 -1.9475 33 1 10.6304 3.7856 0.8400 34 1 6.5877 7.6149 1.4089 35 1 5.4129 5.1702 2.4444 36 1 6.0055 7.9783 4.3373 37 1 7.2088 5.8760 4.5612 38 1 7.0919 5.7010 -0.5905 39 1 7.0121 1.2045 0.0188 40 1 6.9408 2.9544 0.3379 41 1 4.6214 3.0194 -0.5356 42 1 4.7622 1.8723 0.8185 There are 60 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 60 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_40_14940688_15065232.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 14:31:10 Heat of formation + Delta-G solvation = -59.807056 kcal Electronic energy + Delta-G solvation = -28273.062635 eV Core-core repulsion = 24247.226984 eV Total energy + Delta-G solvation = -4025.835650 eV No. of doubly occupied orbitals = 60 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 358.079 amu Computer time = 1.66 seconds Orbital eigenvalues (eV) -40.62056 -39.58856 -38.49513 -38.13013 -37.70658 -36.86544 -35.02784 -33.78864 -32.04036 -31.88819 -29.53815 -27.64109 -27.27129 -25.01500 -23.88209 -23.26426 -21.51534 -21.38389 -20.17550 -19.41424 -19.27021 -18.51501 -18.05435 -17.92948 -17.80729 -17.33138 -16.63364 -16.47529 -16.32284 -16.00447 -15.55188 -15.33799 -15.08588 -14.92342 -14.54382 -14.34604 -14.27363 -14.07482 -13.90416 -13.84630 -13.36473 -13.16908 -13.08614 -13.07157 -12.95303 -12.73790 -12.51250 -12.41963 -12.33454 -12.30016 -11.88391 -11.77202 -11.60641 -11.39423 -11.33206 -10.88798 -10.70004 -10.42736 -10.28250 -9.90729 -5.19868 -0.77818 -0.52584 0.25530 0.51683 0.95062 1.07365 1.39634 1.51506 1.77050 1.84466 1.99378 2.70414 2.82361 3.11905 3.25788 3.41602 3.44493 3.52386 3.59646 3.77147 3.85928 3.87414 3.98968 4.07603 4.11887 4.18391 4.19979 4.30133 4.31166 4.35436 4.36703 4.56754 4.60016 4.69893 4.83716 4.85756 4.88243 4.96078 4.99293 5.00545 5.02244 5.15262 5.24765 5.81720 6.11282 6.17135 6.60882 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C -0.200 4.200 3 C 0.174 3.826 4 O -0.374 6.374 5 C 0.089 3.911 6 H 0.066 0.934 7 C -0.116 4.116 8 C -0.119 4.119 9 C 0.146 3.854 10 H 0.098 0.902 11 N -1.111 6.111 12 S 2.708 3.292 13 O -0.955 6.955 14 O -0.947 6.947 15 C -0.687 4.687 16 C -0.082 4.082 17 S 0.158 5.842 18 C -0.226 4.226 19 C -0.034 4.034 20 O -0.519 6.519 21 Si 0.650 3.350 22 C -0.042 4.042 23 C -0.138 4.138 24 C -0.140 4.140 25 H 0.223 0.777 26 H 0.073 0.927 27 H 0.074 0.926 28 H 0.078 0.922 29 H 0.078 0.922 30 H 0.073 0.927 31 H 0.082 0.918 32 H 0.420 0.580 33 H 0.185 0.815 34 H 0.130 0.870 35 H 0.376 0.624 36 H -0.232 1.232 37 H -0.240 1.240 38 H 0.157 0.843 39 H 0.073 0.927 40 H 0.073 0.927 41 H 0.079 0.921 42 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.674 -2.893 4.077 5.044 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C -0.200 4.200 3 C 0.098 3.902 4 O -0.294 6.294 5 C 0.031 3.969 6 H 0.084 0.916 7 C -0.154 4.154 8 C -0.158 4.158 9 C 0.039 3.961 10 H 0.116 0.884 11 N -0.870 5.870 12 S 2.795 3.205 13 O -0.946 6.946 14 O -0.937 6.937 15 C -0.786 4.786 16 C -0.221 4.221 17 S 0.421 5.579 18 C -0.343 4.343 19 C -0.146 4.146 20 O -0.326 6.326 21 Si 0.548 3.452 22 C -0.071 4.071 23 C -0.177 4.177 24 C -0.179 4.179 25 H 0.239 0.761 26 H 0.091 0.909 27 H 0.092 0.908 28 H 0.097 0.903 29 H 0.097 0.903 30 H 0.092 0.908 31 H 0.101 0.899 32 H 0.255 0.745 33 H 0.203 0.797 34 H 0.148 0.852 35 H 0.224 0.776 36 H -0.155 1.155 37 H -0.164 1.164 38 H 0.174 0.826 39 H 0.091 0.909 40 H 0.091 0.909 41 H 0.097 0.903 42 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 1.000 -1.624 5.331 5.662 hybrid contribution -1.077 -1.572 -0.609 2.000 sum -0.077 -3.196 4.722 5.703 Atomic orbital electron populations 1.25060 0.95994 0.98977 0.98481 1.22502 0.93897 1.01695 1.01923 1.19100 0.84854 0.94311 0.91920 1.88008 1.21264 1.65994 1.54136 1.22199 0.80363 0.98039 0.96257 0.91644 1.21568 0.94731 1.04018 0.95105 1.21758 0.95049 0.98325 1.00640 1.20965 0.78241 1.01356 0.95508 0.88426 1.55615 1.15389 1.25789 1.90185 1.01630 0.72883 0.72707 0.73298 1.93617 1.29961 1.84557 1.86430 1.93615 1.75309 1.65212 1.59594 1.30054 1.06178 1.17694 1.24696 1.25898 1.01413 0.99605 0.95174 1.84474 1.17549 1.44333 1.11505 1.24995 1.02540 1.08899 0.97912 1.24396 0.82386 0.96132 1.11691 1.86664 1.31650 1.39620 1.74616 0.95168 0.90392 0.85085 0.74538 1.19616 0.96110 0.95232 0.96153 1.22081 0.95779 1.03219 0.96614 1.22012 0.94956 1.00515 1.00388 0.76069 0.90933 0.90810 0.90341 0.90297 0.90796 0.89925 0.74508 0.79743 0.85192 0.77628 1.15549 1.16365 0.82573 0.90855 0.90871 0.90260 0.91253 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 30. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -0.19 19.25 29.55 0.57 0.38 16 2 C -0.20 -0.42 13.73 -37.12 -0.51 -0.93 16 3 C 0.17 0.00 6.22 34.37 0.21 0.21 16 4 O -0.37 -0.48 9.95 -35.23 -0.35 -0.83 16 5 C 0.09 -0.13 2.61 -26.73 -0.07 -0.20 16 6 H 0.07 -0.18 7.79 -51.93 -0.40 -0.59 16 7 C -0.12 0.20 5.57 -26.73 -0.15 0.05 16 8 C -0.12 0.34 5.45 -26.73 -0.15 0.19 16 9 C 0.15 -0.34 2.79 -67.93 -0.19 -0.53 16 10 H 0.10 -0.15 7.50 -51.92 -0.39 -0.54 16 11 N -1.11 2.57 5.47 -4.88 -0.03 2.54 16 12 S 2.71 1.79 5.78 -107.50 -0.62 1.17 16 13 O -0.96 -3.15 17.64 -57.17 -1.01 -4.16 16 14 O -0.95 -3.69 16.96 -57.17 -0.97 -4.66 16 15 C -0.69 0.26 4.97 -41.21 -0.20 0.06 16 16 C -0.08 0.12 10.70 29.04 0.31 0.43 16 17 S 0.16 -0.28 20.59 -107.50 -2.21 -2.50 16 18 C -0.23 0.22 5.70 -36.00 -0.21 0.02 16 19 C -0.03 0.04 2.96 36.01 0.11 0.15 16 20 O -0.52 0.15 12.88 -35.23 -0.45 -0.31 16 21 Si 0.65 -1.12 30.98 -169.99 -5.27 -6.39 16 22 C -0.04 0.01 8.69 -41.21 -0.36 -0.35 16 23 C -0.14 0.41 5.53 -26.73 -0.15 0.26 16 24 C -0.14 0.30 5.54 -26.73 -0.15 0.15 16 25 H 0.22 -0.51 7.80 -54.08 -0.42 -0.93 16 26 H 0.07 -0.12 7.87 -51.93 -0.41 -0.53 16 27 H 0.07 -0.12 8.09 -51.93 -0.42 -0.54 16 28 H 0.08 -0.13 8.14 -51.93 -0.42 -0.55 16 29 H 0.08 -0.07 8.14 -51.93 -0.42 -0.49 16 30 H 0.07 -0.29 8.14 -51.93 -0.42 -0.72 16 31 H 0.08 -0.22 8.14 -51.93 -0.42 -0.65 16 32 H 0.42 -1.78 8.84 -34.47 -0.30 -2.08 16 33 H 0.19 -0.59 8.00 -52.49 -0.42 -1.01 16 34 H 0.13 -0.25 7.96 -51.93 -0.41 -0.66 16 35 H 0.38 -1.18 8.70 45.56 0.40 -0.78 16 36 H -0.23 -0.27 7.11 56.52 0.40 0.13 16 37 H -0.24 0.07 7.11 56.52 0.40 0.47 16 38 H 0.16 -0.03 7.96 -52.49 -0.42 -0.45 16 39 H 0.07 -0.27 8.14 -51.93 -0.42 -0.70 16 40 H 0.07 -0.20 6.20 -51.93 -0.32 -0.53 16 41 H 0.08 -0.08 8.14 -51.93 -0.42 -0.51 16 42 H 0.07 -0.17 7.87 -51.93 -0.41 -0.58 16 LS Contribution 377.61 15.07 5.69 5.69 Total: 0.00 -9.96 377.61 -11.82 -21.78 By element: Atomic # 1 Polarization: -6.56 SS G_CDS: -5.67 Total: -12.23 kcal Atomic # 6 Polarization: 0.82 SS G_CDS: -0.93 Total: -0.11 kcal Atomic # 7 Polarization: 2.57 SS G_CDS: -0.03 Total: 2.54 kcal Atomic # 8 Polarization: -7.17 SS G_CDS: -2.78 Total: -9.96 kcal Atomic # 14 Polarization: -1.12 SS G_CDS: -5.27 Total: -6.39 kcal Atomic # 16 Polarization: 1.51 SS G_CDS: -2.84 Total: -1.33 kcal Total LS contribution 5.69 Total: 5.69 kcal Total: -9.96 -11.82 -21.78 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_40_14940688_15065232.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.029 kcal (2) G-P(sol) polarization free energy of solvation -9.962 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.991 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.816 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -21.778 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.807 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.66 seconds