Wall clock time and date at job start Tue Mar 9 2021 14:31:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17393 * 1 3 3 C 1.47206 * 179.97438 * 2 1 4 4 O 1.42896 * 109.46934 * 130.25856 * 3 2 1 5 5 C 1.42898 * 113.99967 * 179.97438 * 4 3 2 6 6 H 1.08996 * 109.47195 * 30.00481 * 5 4 3 7 7 C 1.53005 * 109.47129 * 150.00227 * 5 4 3 8 8 C 1.52999 * 109.47330 * 180.02562 * 7 5 4 9 9 C 1.52999 * 109.46738 * 299.99895 * 8 7 5 10 10 H 1.09009 * 109.47495 * 300.00085 * 9 8 7 11 11 N 1.46506 * 109.47089 * 180.02562 * 9 8 7 12 12 S 1.65595 * 120.00129 * 145.00115 * 11 9 8 13 13 O 1.42096 * 106.40302 * 178.53775 * 12 11 9 14 14 O 1.42098 * 106.40331 * 311.45689 * 12 11 9 15 15 C 1.76204 * 107.21984 * 64.99762 * 12 11 9 16 16 C 1.33395 * 122.53562 * 90.02510 * 15 12 11 17 17 S 1.75880 * 109.58841 * 180.02562 * 16 15 12 18 18 C 1.75882 * 90.97587 * 359.97438 * 17 16 15 19 19 C 1.50699 * 125.20713 * 180.02562 * 18 17 16 20 20 O 1.42892 * 109.47102 * 244.97526 * 19 18 17 21 21 Si 1.86298 * 109.46886 * 4.97878 * 19 18 17 22 22 C 1.33394 * 109.59114 * 359.73015 * 18 17 16 23 23 C 1.53003 * 109.47295 * 60.00315 * 9 8 7 24 24 C 1.52999 * 109.46970 * 299.99543 * 23 9 8 25 25 H 4.38443 * 5.44391 * 180.02562 * 4 1 2 26 26 H 1.08996 * 109.47366 * 250.26237 * 3 2 1 27 27 H 1.09000 * 109.47090 * 10.26048 * 3 2 1 28 28 H 1.09003 * 109.46826 * 300.00300 * 7 5 4 29 29 H 1.09004 * 109.47197 * 60.00085 * 7 5 4 30 30 H 1.08996 * 109.47466 * 59.99965 * 8 7 5 31 31 H 1.08997 * 109.47222 * 180.02562 * 8 7 5 32 32 H 0.96995 * 119.99518 * 324.99652 * 11 9 8 33 33 H 1.07994 * 125.20254 * 359.97438 * 16 15 12 34 34 H 1.08996 * 109.46797 * 124.97421 * 19 18 17 35 35 H 0.96700 * 114.00250 * 59.99889 * 20 19 18 36 36 H 1.48506 * 110.00145 * 180.02562 * 21 19 18 37 37 H 1.48503 * 109.99780 * 301.31755 * 21 19 18 38 38 H 1.07997 * 122.54244 * 180.23853 * 22 18 17 39 39 H 1.08992 * 109.47289 * 59.99380 * 23 9 8 40 40 H 1.09000 * 109.47214 * 180.02562 * 23 9 8 41 41 H 1.09004 * 109.47283 * 300.00329 * 24 23 9 42 42 H 1.08997 * 109.47222 * 179.97438 * 24 23 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1739 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 8 3.1219 0.8715 -1.0281 5 6 4.5464 0.9455 -1.1139 6 1 4.9795 -0.0010 -0.7906 7 6 4.9563 1.2261 -2.5611 8 6 6.4815 1.3047 -2.6531 9 6 6.9892 2.4318 -1.7515 10 1 6.5564 3.3786 -2.0747 11 7 8.4497 2.5076 -1.8400 12 16 9.2092 3.9767 -1.7564 13 8 10.6031 3.7129 -1.8363 14 8 8.5271 4.8332 -2.6622 15 6 8.9170 4.6239 -0.1438 16 6 9.7324 4.3838 0.8843 17 16 9.1203 5.1893 2.3230 18 6 7.7515 5.8263 1.4207 19 6 6.6634 6.6978 1.9930 20 8 5.4183 5.9983 1.9451 21 14 7.0713 7.1196 3.7612 22 6 7.8273 5.4252 0.1507 23 6 6.5794 2.1512 -0.3043 24 6 5.0542 2.0726 -0.2124 25 1 -1.0502 -0.0001 0.0004 26 1 3.0092 0.3479 0.9672 27 1 3.0098 -1.0104 -0.1831 28 1 4.5948 0.4230 -3.2033 29 1 4.5231 2.1727 -2.8844 30 1 6.9143 0.3580 -2.3299 31 1 6.7735 1.5051 -3.6839 32 1 8.9716 1.6971 -1.9475 33 1 10.6304 3.7856 0.8400 34 1 6.5877 7.6149 1.4089 35 1 5.4129 5.1702 2.4444 36 1 6.0055 7.9783 4.3373 37 1 7.2088 5.8760 4.5612 38 1 7.0919 5.7010 -0.5905 39 1 7.0121 1.2045 0.0188 40 1 6.9408 2.9544 0.3379 41 1 4.6214 3.0194 -0.5356 42 1 4.7622 1.8723 0.8185 There are 60 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 60 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_40_14940688_15065232.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 14:31:09 Heat of formation + Delta-G solvation = -62.196956 kcal Electronic energy + Delta-G solvation = -28273.166268 eV Core-core repulsion = 24247.226984 eV Total energy + Delta-G solvation = -4025.939284 eV No. of doubly occupied orbitals = 60 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 358.079 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -40.49492 -39.51778 -38.51796 -38.18344 -37.64569 -37.03646 -34.95536 -33.78244 -31.88771 -31.78313 -29.42672 -27.58387 -27.18707 -24.95585 -23.70657 -23.12976 -21.44783 -21.25258 -20.15877 -19.39137 -19.19231 -18.53367 -17.98113 -17.85865 -17.76565 -17.26025 -16.54890 -16.39348 -16.30308 -15.99129 -15.52162 -15.19283 -14.97327 -14.85318 -14.42727 -14.27021 -14.20609 -13.98527 -13.86299 -13.79262 -13.35155 -13.25029 -13.18642 -13.05427 -12.95254 -12.63791 -12.52185 -12.34983 -12.24757 -12.11728 -11.81111 -11.70903 -11.56100 -11.34450 -11.26574 -10.80740 -10.59453 -10.32490 -10.18795 -9.79712 -5.08629 -0.78449 -0.45314 0.35683 0.60321 0.99263 1.17368 1.47614 1.48801 1.78086 1.84418 2.03617 2.68042 2.88532 3.19508 3.32887 3.52937 3.60527 3.61372 3.73392 3.92598 4.01125 4.02942 4.14866 4.21469 4.25202 4.29250 4.34833 4.43262 4.47114 4.48431 4.51361 4.65972 4.77940 4.87876 4.92013 4.97619 5.04252 5.05481 5.08691 5.16512 5.18794 5.32470 5.42298 6.06533 6.22054 6.37877 6.56293 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C -0.236 4.236 3 C 0.168 3.832 4 O -0.400 6.400 5 C 0.086 3.914 6 H 0.085 0.915 7 C -0.115 4.115 8 C -0.114 4.114 9 C 0.144 3.856 10 H 0.084 0.916 11 N -1.098 6.098 12 S 2.723 3.277 13 O -0.983 6.983 14 O -0.986 6.986 15 C -0.692 4.692 16 C -0.081 4.081 17 S 0.188 5.812 18 C -0.229 4.229 19 C -0.040 4.040 20 O -0.536 6.536 21 Si 0.715 3.285 22 C -0.053 4.053 23 C -0.132 4.132 24 C -0.136 4.136 25 H 0.247 0.753 26 H 0.087 0.913 27 H 0.090 0.910 28 H 0.077 0.923 29 H 0.063 0.937 30 H 0.093 0.907 31 H 0.080 0.920 32 H 0.431 0.569 33 H 0.204 0.796 34 H 0.134 0.866 35 H 0.387 0.613 36 H -0.275 1.275 37 H -0.253 1.253 38 H 0.149 0.851 39 H 0.090 0.910 40 H 0.072 0.928 41 H 0.062 0.938 42 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.429 -3.968 5.125 6.637 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.236 4.236 3 C 0.093 3.907 4 O -0.320 6.320 5 C 0.030 3.970 6 H 0.103 0.897 7 C -0.154 4.154 8 C -0.153 4.153 9 C 0.037 3.963 10 H 0.102 0.898 11 N -0.860 5.860 12 S 2.812 3.188 13 O -0.974 6.974 14 O -0.976 6.976 15 C -0.793 4.793 16 C -0.221 4.221 17 S 0.452 5.548 18 C -0.347 4.347 19 C -0.152 4.152 20 O -0.344 6.344 21 Si 0.616 3.384 22 C -0.082 4.082 23 C -0.171 4.171 24 C -0.175 4.175 25 H 0.263 0.737 26 H 0.105 0.895 27 H 0.108 0.892 28 H 0.096 0.904 29 H 0.081 0.919 30 H 0.112 0.888 31 H 0.099 0.901 32 H 0.269 0.731 33 H 0.221 0.779 34 H 0.151 0.849 35 H 0.237 0.763 36 H -0.201 1.201 37 H -0.178 1.178 38 H 0.166 0.834 39 H 0.108 0.892 40 H 0.091 0.909 41 H 0.081 0.919 42 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges 1.779 -2.725 6.346 7.132 hybrid contribution -1.395 -1.231 -0.884 2.059 sum 0.384 -3.955 5.462 6.755 Atomic orbital electron populations 1.25857 0.97013 0.98347 0.97822 1.23286 0.95221 1.02413 1.02654 1.19302 0.83987 0.95044 0.92330 1.87973 1.22804 1.66507 1.54745 1.22337 0.79332 0.99066 0.96315 0.89741 1.21556 0.95447 1.03159 0.95221 1.21736 0.94188 0.98924 1.00473 1.21010 0.77860 1.01120 0.96321 0.89764 1.55287 1.15395 1.25243 1.90028 1.00816 0.71958 0.72731 0.73254 1.93573 1.31675 1.85056 1.87059 1.93567 1.75834 1.66707 1.61508 1.29774 1.06797 1.18578 1.24155 1.26197 1.01597 0.99249 0.95017 1.84379 1.16427 1.43457 1.10537 1.25049 1.02983 1.08811 0.97883 1.24565 0.82088 0.96232 1.12307 1.86636 1.32231 1.40455 1.75114 0.94418 0.88671 0.82513 0.72749 1.19613 0.96294 0.95820 0.96443 1.22041 0.95097 1.04072 0.95912 1.21963 0.95445 0.99544 1.00549 0.73668 0.89522 0.89245 0.90404 0.91853 0.88843 0.90137 0.73123 0.77944 0.84876 0.76346 1.20067 1.17796 0.83354 0.89173 0.90890 0.91929 0.90608 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -0.43 19.25 74.32 1.43 1.00 16 2 C -0.24 -1.11 13.73 31.13 0.43 -0.69 16 3 C 0.17 0.01 6.22 70.18 0.44 0.44 16 4 O -0.40 -1.24 9.95 -148.98 -1.48 -2.72 16 5 C 0.09 -0.27 2.61 30.60 0.08 -0.19 16 6 H 0.08 -0.59 7.79 -2.39 -0.02 -0.61 16 7 C -0.12 0.34 5.57 30.60 0.17 0.52 16 8 C -0.11 0.68 5.45 30.59 0.17 0.85 16 9 C 0.14 -0.64 2.79 44.99 0.13 -0.51 16 10 H 0.08 -0.13 7.50 -2.38 -0.02 -0.15 16 11 N -1.10 5.13 5.47 -169.37 -0.93 4.20 16 12 S 2.72 5.57 5.78 -56.49 -0.33 5.24 16 13 O -0.98 -6.90 17.64 -128.00 -2.26 -9.16 16 14 O -0.99 -9.33 16.96 -128.00 -2.17 -11.50 16 15 C -0.69 0.46 4.97 21.22 0.11 0.57 16 16 C -0.08 0.31 10.70 66.72 0.71 1.02 16 17 S 0.19 -0.89 20.59 -56.49 -1.16 -2.05 16 18 C -0.23 0.48 5.70 24.59 0.14 0.62 16 19 C -0.04 0.10 2.96 71.24 0.21 0.31 16 20 O -0.54 0.06 12.88 -148.98 -1.92 -1.86 16 21 Si 0.72 -2.51 30.98 68.60 2.13 -0.38 16 22 C -0.05 0.00 8.69 21.22 0.18 0.18 16 23 C -0.13 0.86 5.53 30.60 0.17 1.03 16 24 C -0.14 0.57 5.54 30.59 0.17 0.74 16 25 H 0.25 -1.21 7.80 -4.41 -0.03 -1.25 16 26 H 0.09 -0.31 7.87 -2.39 -0.02 -0.33 16 27 H 0.09 -0.35 8.09 -2.39 -0.02 -0.37 16 28 H 0.08 -0.22 8.14 -2.39 -0.02 -0.24 16 29 H 0.06 0.00 8.14 -2.39 -0.02 -0.02 16 30 H 0.09 -0.90 8.14 -2.39 -0.02 -0.92 16 31 H 0.08 -0.42 8.14 -2.39 -0.02 -0.44 16 32 H 0.43 -3.96 8.84 -96.75 -0.85 -4.82 16 33 H 0.20 -1.60 8.00 -2.91 -0.02 -1.62 16 34 H 0.13 -0.45 7.96 -2.39 -0.02 -0.47 16 35 H 0.39 -2.37 8.70 -74.06 -0.64 -3.02 16 36 H -0.28 -0.97 7.11 99.48 0.71 -0.26 16 37 H -0.25 0.33 7.11 99.48 0.71 1.04 16 38 H 0.15 0.19 7.96 -2.91 -0.02 0.16 16 39 H 0.09 -0.85 8.14 -2.39 -0.02 -0.87 16 40 H 0.07 -0.44 6.20 -2.39 -0.01 -0.45 16 41 H 0.06 -0.04 8.14 -2.39 -0.02 -0.06 16 42 H 0.08 -0.41 7.87 -2.39 -0.02 -0.43 16 Total: 0.00 -23.47 377.61 -4.00 -27.47 By element: Atomic # 1 Polarization: -14.71 SS G_CDS: -0.41 Total: -15.12 kcal Atomic # 6 Polarization: 1.35 SS G_CDS: 4.53 Total: 5.88 kcal Atomic # 7 Polarization: 5.13 SS G_CDS: -0.93 Total: 4.20 kcal Atomic # 8 Polarization: -17.42 SS G_CDS: -7.83 Total: -25.25 kcal Atomic # 14 Polarization: -2.51 SS G_CDS: 2.13 Total: -0.38 kcal Atomic # 16 Polarization: 4.68 SS G_CDS: -1.49 Total: 3.19 kcal Total: -23.47 -4.00 -27.47 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_40_14940688_15065232.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.725 kcal (2) G-P(sol) polarization free energy of solvation -23.471 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.196 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.001 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -27.472 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.197 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds