Wall clock time and date at job start Tue Mar 9 2021 14:31:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 N 1.30278 * 126.28153 * 2 1 4 4 N 1.28666 * 109.37867 * 180.26518 * 3 2 1 5 5 C 1.30275 * 109.38195 * 359.97438 * 4 3 2 6 6 C 1.50701 * 126.28195 * 179.97438 * 5 4 3 7 7 H 1.09004 * 112.84923 * 191.20152 * 6 5 4 8 8 C 1.53781 * 113.61509 * 322.51004 * 6 5 4 9 9 C 1.53784 * 87.08046 * 139.97588 * 8 6 5 10 10 H 1.09007 * 113.68603 * 89.12455 * 9 8 6 11 11 N 1.46496 * 113.61468 * 220.01489 * 9 8 6 12 12 S 1.65596 * 120.00213 * 241.60430 * 11 9 8 13 13 O 1.42097 * 106.40414 * 177.35523 * 12 11 9 14 14 O 1.42103 * 106.40311 * 310.27876 * 12 11 9 15 15 C 1.76201 * 107.21678 * 63.81538 * 12 11 9 16 16 C 1.33387 * 122.54132 * 67.71017 * 15 12 11 17 17 C 1.50701 * 125.20050 * 0.02562 * 16 15 12 18 18 O 1.42899 * 109.47313 * 318.21464 * 17 16 15 19 19 Si 1.86303 * 109.47006 * 198.21698 * 17 16 15 20 20 S 1.75887 * 109.59613 * 180.02562 * 16 15 12 21 21 C 1.75884 * 90.96971 * 359.97438 * 20 16 15 22 22 C 1.33394 * 109.59133 * 359.73484 * 21 20 16 23 23 C 1.53778 * 87.08090 * 334.56888 * 9 8 6 24 24 O 1.34354 * 126.27889 * 180.30975 * 2 1 3 25 25 H 1.09000 * 109.47030 * 269.69111 * 1 2 3 26 26 H 1.09006 * 109.46846 * 29.68760 * 1 2 3 27 27 H 1.08996 * 109.46924 * 149.69181 * 1 2 3 28 28 H 1.08995 * 113.61139 * 254.52892 * 8 6 5 29 29 H 1.09005 * 113.61590 * 25.43043 * 8 6 5 30 30 H 0.96996 * 119.99721 * 61.61422 * 11 9 8 31 31 H 1.09002 * 109.47479 * 78.21614 * 17 16 15 32 32 H 0.96700 * 114.00493 * 180.02562 * 18 17 16 33 33 H 1.48497 * 110.00179 * 59.99809 * 19 17 16 34 34 H 1.48496 * 109.99951 * 181.31781 * 19 17 16 35 35 H 1.07997 * 125.20213 * 179.97438 * 21 20 16 36 36 H 1.08001 * 122.53855 * 180.24427 * 22 21 20 37 37 H 1.08998 * 113.61348 * 270.87817 * 23 9 8 38 38 H 1.08999 * 113.69156 * 139.98868 * 23 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2780 1.0502 0.0000 4 7 3.5090 0.6761 -0.0056 5 6 3.5654 -0.6254 -0.0088 6 6 4.8176 -1.4638 -0.0162 7 1 4.6203 -2.5176 -0.2129 8 6 5.9478 -0.8755 -0.8773 9 6 6.9168 -1.3186 0.2317 10 1 7.2954 -2.3326 0.1030 11 7 7.9771 -0.3461 0.5076 12 16 9.5633 -0.7640 0.2811 13 8 10.3295 0.3972 0.5704 14 8 9.7506 -2.0048 0.9480 15 6 9.7776 -1.0860 -1.4379 16 6 9.6941 -0.1287 -2.3630 17 6 9.4136 1.3257 -2.0853 18 8 8.3892 1.4326 -1.0947 19 14 8.8507 2.1600 -3.6531 20 16 9.9616 -0.8234 -3.9566 21 6 10.1789 -2.4220 -3.2561 22 6 10.0513 -2.3504 -1.9302 23 6 5.7266 -1.2239 1.2009 24 8 2.3020 -1.0831 -0.0059 25 1 -0.3633 -0.0055 1.0277 26 1 -0.3633 0.8928 -0.5090 27 1 -0.3633 -0.8872 -0.5186 28 1 6.0955 -1.3999 -1.8213 29 1 5.8872 0.2061 -0.9976 30 1 7.7499 0.5426 0.8230 31 1 10.3213 1.8081 -1.7227 32 1 8.1564 2.3429 -0.8661 33 1 7.6138 1.5116 -4.1576 34 1 8.6013 3.6018 -3.3998 35 1 10.3878 -3.3229 -3.8138 36 1 10.1499 -3.2144 -1.2897 37 1 5.6055 -0.2376 1.6486 38 1 5.6945 -2.0289 1.9351 There are 59 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 59 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_40_14942248_14772022.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 14:31:29 Heat of formation + Delta-G solvation = 13.672745 kcal Electronic energy + Delta-G solvation = -28371.253068 eV Core-core repulsion = 24245.063398 eV Total energy + Delta-G solvation = -4126.189671 eV No. of doubly occupied orbitals = 59 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 358.054 amu Computer time = 1.41 seconds Orbital eigenvalues (eV) -45.19673 -40.46932 -39.53091 -38.21988 -37.47356 -37.11764 -36.64898 -34.67765 -33.34950 -31.96941 -29.56289 -27.49034 -26.90910 -26.54773 -24.30034 -23.74494 -23.26575 -21.73742 -21.00965 -19.98192 -19.08672 -18.60274 -18.49535 -18.38905 -18.13565 -17.71488 -17.15770 -16.50113 -16.35121 -15.97626 -15.56558 -15.33387 -15.07918 -14.81115 -14.54986 -14.34261 -14.11974 -14.02031 -13.86681 -13.72806 -13.63146 -13.49089 -13.32709 -12.99907 -12.97113 -12.83864 -12.80432 -12.62626 -12.40421 -12.29021 -12.18007 -11.94974 -11.79535 -11.64779 -10.97440 -10.43028 -10.32072 -10.06694 -9.72292 -5.24718 -0.56305 -0.37856 0.14197 0.31629 0.63191 0.99912 1.16793 1.23557 1.39336 1.44729 1.76239 2.17864 2.75072 2.78443 3.04566 3.17889 3.30715 3.44439 3.46866 3.54016 3.63310 3.65710 3.92034 4.05075 4.15363 4.20320 4.22422 4.29311 4.36075 4.44233 4.51511 4.56978 4.63360 4.67773 4.74609 4.77902 4.78838 4.86887 4.93526 5.16219 5.35297 6.10481 6.14759 7.34173 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 C 0.161 3.839 3 N -0.289 5.289 4 N -0.282 5.282 5 C 0.175 3.825 6 C -0.027 4.027 7 H 0.126 0.874 8 C -0.131 4.131 9 C 0.137 3.863 10 H 0.122 0.878 11 N -1.077 6.077 12 S 2.720 3.280 13 O -0.954 6.954 14 O -0.963 6.963 15 C -0.668 4.668 16 C -0.049 4.049 17 C -0.065 4.065 18 O -0.532 6.532 19 Si 0.667 3.333 20 S 0.158 5.842 21 C -0.214 4.214 22 C -0.077 4.077 23 C -0.126 4.126 24 O -0.226 6.226 25 H 0.100 0.900 26 H 0.107 0.893 27 H 0.094 0.906 28 H 0.081 0.919 29 H 0.110 0.890 30 H 0.423 0.577 31 H 0.112 0.888 32 H 0.395 0.605 33 H -0.237 1.237 34 H -0.235 1.235 35 H 0.175 0.825 36 H 0.158 0.842 37 H 0.101 0.899 38 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.576 -1.540 -4.166 5.134 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C -0.050 4.050 3 N -0.137 5.137 4 N -0.128 5.128 5 C -0.035 4.035 6 C -0.048 4.048 7 H 0.144 0.856 8 C -0.171 4.171 9 C 0.028 3.972 10 H 0.139 0.861 11 N -0.836 5.836 12 S 2.806 3.194 13 O -0.944 6.944 14 O -0.953 6.953 15 C -0.767 4.767 16 C -0.170 4.170 17 C -0.176 4.176 18 O -0.342 6.342 19 Si 0.563 3.437 20 S 0.422 5.578 21 C -0.349 4.349 22 C -0.105 4.105 23 C -0.166 4.166 24 O -0.105 6.105 25 H 0.119 0.881 26 H 0.126 0.874 27 H 0.112 0.888 28 H 0.100 0.900 29 H 0.129 0.871 30 H 0.260 0.740 31 H 0.129 0.871 32 H 0.246 0.754 33 H -0.161 1.161 34 H -0.158 1.158 35 H 0.193 0.807 36 H 0.175 0.825 37 H 0.120 0.880 38 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -2.073 -0.178 -5.541 5.919 hybrid contribution -1.276 -1.109 1.625 2.345 sum -3.349 -1.287 -3.916 5.311 Atomic orbital electron populations 1.20396 0.80051 1.05882 1.05449 1.28080 0.97933 0.79565 0.99371 1.74439 0.96021 1.25561 1.17641 1.74312 1.12257 1.09020 1.17209 1.27750 0.84639 0.91643 0.99500 1.21116 0.84138 0.98373 1.01152 0.85592 1.23637 0.91768 1.03783 0.97896 1.22052 0.86666 0.92931 0.95542 0.86061 1.55245 1.23030 1.23605 1.81726 1.01223 0.72254 0.73211 0.72717 1.93566 1.68031 1.49414 1.83380 1.93590 1.84865 1.45602 1.71285 1.29896 1.19824 0.99725 1.27273 1.23763 0.99329 0.97196 0.96726 1.24465 0.95979 0.94350 1.02838 1.86451 1.56584 1.33762 1.57450 0.95178 0.87419 0.81508 0.79561 1.84238 1.66655 1.01019 1.05921 1.25895 1.10297 1.00636 0.98088 1.19758 0.99574 0.96107 0.95049 1.23485 0.92601 1.04656 0.95852 1.84790 1.17628 1.38450 1.69657 0.88132 0.87402 0.88764 0.90048 0.87143 0.73999 0.87058 0.75404 1.16061 1.15826 0.80724 0.82469 0.88044 0.89125 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 28. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 0.17 10.51 36.01 0.38 0.55 16 2 C 0.16 0.30 8.48 -12.94 -0.11 0.19 16 3 N -0.29 -1.34 12.22 32.55 0.40 -0.94 16 4 N -0.28 -1.19 11.83 32.55 0.39 -0.81 16 5 C 0.18 0.36 7.53 -12.94 -0.10 0.26 16 6 C -0.03 0.04 4.29 -90.96 -0.39 -0.36 16 7 H 0.13 -0.42 8.14 -51.93 -0.42 -0.84 16 8 C -0.13 0.18 7.42 -25.92 -0.19 -0.01 16 9 C 0.14 -0.22 4.41 -67.12 -0.30 -0.52 16 10 H 0.12 -0.30 7.81 -51.93 -0.41 -0.71 16 11 N -1.08 0.78 3.99 -4.20 -0.02 0.76 16 12 S 2.72 5.80 4.88 -107.50 -0.52 5.28 16 13 O -0.95 -4.25 16.52 -63.77 -1.05 -5.31 16 14 O -0.96 -4.61 16.92 -57.17 -0.97 -5.58 16 15 C -0.67 -0.76 5.75 -41.21 -0.24 -1.00 16 16 C -0.05 -0.01 5.77 -36.00 -0.21 -0.22 16 17 C -0.07 0.08 2.13 36.01 0.08 0.16 16 18 O -0.53 1.08 7.87 -49.51 -0.39 0.69 16 19 Si 0.67 -1.26 31.14 -169.99 -5.29 -6.56 16 20 S 0.16 -0.18 20.80 -107.50 -2.24 -2.41 16 21 C -0.21 0.19 11.23 29.04 0.33 0.52 16 22 C -0.08 -0.03 9.70 -41.21 -0.40 -0.43 16 23 C -0.13 0.22 7.42 -25.92 -0.19 0.03 16 24 O -0.23 -0.51 10.87 5.39 0.06 -0.45 16 25 H 0.10 -0.41 8.14 -51.93 -0.42 -0.83 16 26 H 0.11 -0.39 8.14 -51.93 -0.42 -0.81 16 27 H 0.09 -0.41 8.14 -51.93 -0.42 -0.83 16 28 H 0.08 -0.15 8.14 -51.93 -0.42 -0.58 16 29 H 0.11 -0.02 7.78 -51.93 -0.40 -0.42 16 30 H 0.42 -0.85 7.83 -34.47 -0.27 -1.12 16 31 H 0.11 -0.21 7.93 -51.93 -0.41 -0.62 16 32 H 0.39 -2.12 8.74 45.56 0.40 -1.72 16 33 H -0.24 -0.20 7.11 56.52 0.40 0.20 16 34 H -0.24 0.06 7.11 56.52 0.40 0.47 16 35 H 0.18 -0.56 8.06 -52.49 -0.42 -0.99 16 36 H 0.16 -0.05 7.74 -52.49 -0.41 -0.46 16 37 H 0.10 -0.10 8.09 -51.93 -0.42 -0.52 16 38 H 0.09 -0.24 8.14 -51.93 -0.42 -0.67 16 LS Contribution 348.72 15.07 5.26 5.26 Total: 0.00 -11.56 348.72 -9.80 -21.36 By element: Atomic # 1 Polarization: -6.38 SS G_CDS: -4.08 Total: -10.46 kcal Atomic # 6 Polarization: 0.51 SS G_CDS: -1.34 Total: -0.83 kcal Atomic # 7 Polarization: -1.75 SS G_CDS: 0.77 Total: -0.99 kcal Atomic # 8 Polarization: -8.29 SS G_CDS: -2.35 Total: -10.65 kcal Atomic # 14 Polarization: -1.26 SS G_CDS: -5.29 Total: -6.56 kcal Atomic # 16 Polarization: 5.62 SS G_CDS: -2.76 Total: 2.86 kcal Total LS contribution 5.26 Total: 5.26 kcal Total: -11.56 -9.80 -21.36 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_40_14942248_14772022.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.031 kcal (2) G-P(sol) polarization free energy of solvation -11.558 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.473 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.801 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -21.359 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.673 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.41 seconds