Wall clock time and date at job start Tue Mar 9 2021 12:57:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52993 * 109.47335 * 2 1 4 4 C 1.53002 * 109.47112 * 239.99361 * 2 1 3 5 5 Si 1.86304 * 109.46745 * 119.99890 * 2 1 3 6 6 C 1.86301 * 109.47092 * 299.99791 * 5 2 1 7 7 C 1.86294 * 109.47287 * 179.97438 * 5 2 1 8 8 O 1.63104 * 109.47445 * 59.99538 * 5 2 1 9 9 C 1.35890 * 113.99868 * 179.97438 * 8 5 2 10 10 C 1.38753 * 120.02689 * 90.00594 * 9 8 5 11 11 C 1.38201 * 120.05811 * 179.97438 * 10 9 8 12 12 C 1.38157 * 120.10546 * 359.97197 * 11 10 9 13 13 C 1.38794 * 120.05517 * 0.28103 * 12 11 10 14 14 O 1.35891 * 120.02534 * 179.69942 * 13 12 11 15 15 S 1.52196 * 114.00296 * 90.00099 * 14 13 12 16 16 O 1.42100 * 106.40768 * 188.54050 * 15 14 13 17 17 O 1.42104 * 106.40010 * 321.45848 * 15 14 13 18 18 C 1.76202 * 107.22072 * 74.99417 * 15 14 13 19 19 C 1.33381 * 122.54102 * 269.71198 * 18 15 14 20 20 S 1.75886 * 109.59285 * 179.90175 * 19 18 15 21 21 C 1.75880 * 90.96910 * 0.30675 * 20 19 18 22 22 C 1.50706 * 125.20469 * 179.79587 * 21 20 19 23 23 O 1.42894 * 109.47486 * 120.03690 * 22 21 20 24 24 Si 1.86303 * 109.46785 * 0.03621 * 22 21 20 25 25 H 1.48500 * 109.47095 * 300.00303 * 24 22 21 26 26 H 1.48500 * 109.47241 * 60.00187 * 24 22 21 27 27 H 1.48502 * 109.46815 * 180.02562 * 24 22 21 28 28 C 1.33390 * 109.59882 * 359.82446 * 21 20 19 29 29 C 1.38618 * 119.94512 * 359.46856 * 13 12 11 30 30 H 1.08995 * 109.46784 * 300.00816 * 1 2 3 31 31 H 1.09004 * 109.46459 * 60.00434 * 1 2 3 32 32 H 1.08990 * 109.47208 * 180.02562 * 1 2 3 33 33 H 1.09004 * 109.46881 * 180.02562 * 3 2 1 34 34 H 1.09004 * 109.46992 * 299.99239 * 3 2 1 35 35 H 1.08995 * 109.47851 * 59.99838 * 3 2 1 36 36 H 1.09003 * 109.47021 * 300.00421 * 4 2 1 37 37 H 1.08994 * 109.46866 * 60.00393 * 4 2 1 38 38 H 1.08998 * 109.47141 * 180.02562 * 4 2 1 39 39 H 1.08995 * 109.47792 * 180.02562 * 6 5 2 40 40 H 1.09003 * 109.47227 * 300.00442 * 6 5 2 41 41 H 1.08998 * 109.47185 * 59.99751 * 6 5 2 42 42 H 1.09001 * 109.47088 * 300.00306 * 7 5 2 43 43 H 1.09003 * 109.47126 * 59.99496 * 7 5 2 44 44 H 1.08995 * 109.47734 * 179.97438 * 7 5 2 45 45 H 1.08005 * 119.97401 * 359.97437 * 10 9 8 46 46 H 1.07994 * 119.94610 * 179.97438 * 11 10 9 47 47 H 1.08002 * 119.96818 * 179.97438 * 12 11 10 48 48 H 1.08003 * 125.20452 * 0.02845 * 19 18 15 49 49 H 1.09002 * 109.47170 * 240.04050 * 22 21 20 50 50 H 0.96701 * 114.00098 * 180.02562 * 23 22 21 51 51 H 1.07990 * 122.54387 * 179.97438 * 28 21 20 52 52 H 1.07993 * 120.05341 * 180.25575 * 29 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 2.0401 -0.7214 -1.2492 5 14 2.1510 -0.8782 1.5212 6 6 1.5299 0.0001 3.0423 7 6 4.0139 -0.8790 1.5210 8 8 1.6072 -2.4160 1.5214 9 6 2.0086 -3.1440 2.5963 10 6 1.2330 -3.1693 3.7465 11 6 1.6403 -3.9100 4.8399 12 6 2.8200 -4.6274 4.7904 13 6 3.6020 -4.6011 3.6439 14 8 4.7652 -5.3020 3.5981 15 16 4.6100 -6.7263 3.0845 16 8 5.8619 -7.3661 3.2910 17 8 3.3890 -7.2158 3.6220 18 6 4.3822 -6.6298 1.3399 19 6 3.1767 -6.5286 0.7783 20 16 3.3453 -6.4536 -0.9709 21 6 5.0947 -6.5766 -0.8374 22 6 6.0560 -6.5878 -1.9980 23 8 6.9549 -5.4831 -1.8827 24 14 5.1043 -6.4501 -3.5937 25 1 4.1701 -7.5982 -3.7136 26 1 4.3328 -5.1813 -3.6021 27 1 6.0515 -6.4618 -4.7375 28 6 5.4407 -6.6592 0.4482 29 6 3.1929 -3.8631 2.5441 30 1 -0.3633 0.5139 0.8899 31 1 -0.3632 0.5138 -0.8901 32 1 -0.3633 -1.0276 0.0005 33 1 3.1301 1.4423 -0.0005 34 1 1.6769 1.9562 -0.8901 35 1 1.6768 1.9564 0.8899 36 1 1.6767 -1.7491 -1.2491 37 1 1.6768 -0.2076 -2.1391 38 1 3.1301 -0.7218 -1.2490 39 1 1.8935 -0.5134 3.9323 40 1 1.8933 1.0278 3.0423 41 1 0.4400 0.0002 3.0422 42 1 4.3769 -1.3931 0.6310 43 1 4.3777 0.1485 1.5207 44 1 4.3772 -1.3924 2.4112 45 1 0.3101 -2.6097 3.7875 46 1 1.0355 -3.9280 5.7344 47 1 3.1364 -5.2051 5.6462 48 1 2.2403 -6.4956 1.3155 49 1 6.6222 -7.5192 -1.9919 50 1 7.6033 -5.4272 -2.5980 51 1 6.4684 -6.7430 0.7690 52 1 3.7979 -3.8448 1.6498 RHF calculation, no. of doubly occupied orbitals= 72 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_40_15065182_15065232.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 12:57:02 Heat of formation + Delta-G solvation = -158.256281 kcal Electronic energy + Delta-G solvation = -37262.505704 eV Core-core repulsion = 32570.711831 eV Total energy + Delta-G solvation = -4691.793873 eV No. of doubly occupied orbitals = 72 Molecular weight (most abundant/longest-lived isotopes) = 430.099 amu Computer time = 1.15 seconds Orbital eigenvalues (eV) -42.30796 -40.34149 -39.44129 -38.33197 -37.63012 -37.44202 -37.00883 -36.99710 -32.20033 -31.76261 -30.86576 -29.42756 -29.20519 -28.00498 -27.52090 -27.25364 -25.12454 -24.70036 -23.96364 -21.85995 -21.07206 -20.55912 -19.69956 -19.02416 -18.83196 -18.57697 -18.28657 -17.62549 -17.57065 -17.33283 -16.58021 -16.49316 -16.04967 -15.83221 -15.67904 -15.09779 -15.07906 -14.97584 -14.88099 -14.78707 -14.43451 -14.22595 -14.17156 -14.08623 -14.04244 -13.81710 -13.57100 -13.46487 -13.33179 -13.28675 -13.20434 -13.07258 -13.05861 -13.03459 -12.88755 -12.80642 -12.68669 -12.55061 -12.50249 -12.29717 -12.25221 -12.20676 -11.80890 -11.77220 -11.62500 -10.71836 -10.64211 -10.26410 -10.25857 -10.18060 -9.83442 -9.72417 -1.03283 -0.52903 -0.10101 -0.06905 0.24077 0.52111 0.89729 0.94716 1.07819 1.27637 1.32091 1.47743 1.50151 1.74038 1.80062 2.13517 2.41153 2.56198 3.08921 3.22110 3.52195 3.61227 3.68319 3.78259 3.82587 3.88322 3.96289 3.97062 4.00549 4.13773 4.19140 4.29359 4.33823 4.56400 4.57608 4.61760 4.62188 4.63945 4.69287 4.72500 4.80207 4.86852 4.88322 4.90721 4.96903 4.97593 5.03188 5.05828 5.07470 5.09515 5.19653 5.22584 5.29202 5.33485 5.41949 5.49097 5.76997 6.40012 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.369 4.369 3 C -0.138 4.138 4 C -0.137 4.137 5 Si 1.274 2.726 6 C -0.506 4.506 7 C -0.510 4.510 8 O -0.555 6.555 9 C 0.149 3.851 10 C -0.137 4.137 11 C -0.075 4.075 12 C -0.108 4.108 13 C 0.088 3.912 14 O -0.654 6.654 15 S 2.691 3.309 16 O -0.919 6.919 17 O -0.946 6.946 18 C -0.710 4.710 19 C -0.075 4.075 20 S 0.159 5.841 21 C -0.186 4.186 22 C -0.041 4.041 23 O -0.541 6.541 24 Si 0.885 3.115 25 H -0.231 1.231 26 H -0.229 1.229 27 H -0.226 1.226 28 C -0.038 4.038 29 C -0.167 4.167 30 H 0.056 0.944 31 H 0.056 0.944 32 H 0.059 0.941 33 H 0.057 0.943 34 H 0.059 0.941 35 H 0.058 0.942 36 H 0.059 0.941 37 H 0.057 0.943 38 H 0.056 0.944 39 H 0.072 0.928 40 H 0.079 0.921 41 H 0.075 0.925 42 H 0.075 0.925 43 H 0.080 0.920 44 H 0.072 0.928 45 H 0.146 0.854 46 H 0.149 0.851 47 H 0.146 0.854 48 H 0.189 0.811 49 H 0.090 0.910 50 H 0.385 0.615 51 H 0.161 0.839 52 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.351 3.465 -2.475 4.864 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.414 4.414 3 C -0.195 4.195 4 C -0.194 4.194 5 Si 1.409 2.591 6 C -0.609 4.609 7 C -0.613 4.613 8 O -0.508 6.508 9 C 0.105 3.895 10 C -0.156 4.156 11 C -0.093 4.093 12 C -0.129 4.129 13 C 0.047 3.953 14 O -0.613 6.613 15 S 2.781 3.219 16 O -0.918 6.918 17 O -0.944 6.944 18 C -0.808 4.808 19 C -0.214 4.214 20 S 0.423 5.577 21 C -0.303 4.303 22 C -0.154 4.154 23 O -0.347 6.347 24 Si 0.704 3.296 25 H -0.154 1.154 26 H -0.152 1.152 27 H -0.148 1.148 28 C -0.066 4.066 29 C -0.188 4.188 30 H 0.075 0.925 31 H 0.075 0.925 32 H 0.078 0.922 33 H 0.076 0.924 34 H 0.078 0.922 35 H 0.077 0.923 36 H 0.078 0.922 37 H 0.076 0.924 38 H 0.075 0.925 39 H 0.092 0.908 40 H 0.098 0.902 41 H 0.095 0.905 42 H 0.094 0.906 43 H 0.099 0.901 44 H 0.091 0.909 45 H 0.164 0.836 46 H 0.167 0.833 47 H 0.164 0.836 48 H 0.206 0.794 49 H 0.108 0.892 50 H 0.233 0.767 51 H 0.178 0.822 52 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges -4.053 3.370 -3.495 6.325 hybrid contribution 1.805 0.095 0.225 1.821 sum -2.248 3.465 -3.270 5.269 Atomic orbital electron populations 1.21545 0.93569 1.02087 1.02142 1.25709 1.00838 1.02778 1.12077 1.21562 1.00943 0.94563 1.02407 1.21551 1.00842 1.00205 0.96845 0.77168 0.63824 0.52052 0.66037 1.26972 1.07111 1.09611 1.17214 1.27020 1.23888 1.05285 1.05098 1.83832 1.77628 1.45292 1.44058 1.17632 0.91633 0.94330 0.85920 1.21612 1.01179 1.00975 0.91878 1.21003 0.95056 0.94451 0.98792 1.21376 0.94444 0.99765 0.97277 1.17736 0.82923 0.98577 0.96096 1.85782 1.42042 1.47754 1.85729 1.02224 0.74034 0.72576 0.73073 1.93646 1.43058 1.70541 1.84529 1.93648 1.46879 1.77894 1.76005 1.30136 0.99130 1.23154 1.28372 1.25906 1.00891 0.96367 0.98221 1.84453 1.01661 1.67753 1.03785 1.23823 0.96120 1.12347 0.98021 1.23977 0.95033 0.92920 1.03442 1.86506 1.48104 1.47398 1.52726 0.86416 0.82029 0.83784 0.77355 1.15370 1.15159 1.14795 1.19572 0.99563 0.97094 0.90372 1.21450 0.97687 1.00282 0.99363 0.92488 0.92454 0.92168 0.92355 0.92194 0.92340 0.92197 0.92427 0.92490 0.90842 0.90181 0.90544 0.90594 0.90137 0.90852 0.83619 0.83313 0.83588 0.79425 0.89195 0.76720 0.82182 0.83334 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 0.16 7.85 37.16 0.29 0.45 16 2 C -0.37 0.45 0.53 -90.62 -0.05 0.40 16 3 C -0.14 0.21 7.85 37.15 0.29 0.50 16 4 C -0.14 0.10 7.85 37.16 0.29 0.39 16 5 Si 1.27 -1.95 8.27 -169.99 -1.41 -3.35 16 6 C -0.51 0.90 8.31 101.05 0.84 1.74 16 7 C -0.51 0.33 8.31 101.05 0.84 1.17 16 8 O -0.55 0.18 8.52 -19.39 -0.17 0.02 16 9 C 0.15 0.00 4.63 -39.24 -0.18 -0.18 16 10 C -0.14 0.19 8.77 -39.40 -0.35 -0.16 16 11 C -0.07 0.12 10.04 -39.62 -0.40 -0.27 16 12 C -0.11 -0.02 9.19 -39.41 -0.36 -0.39 16 13 C 0.09 0.14 4.80 -39.24 -0.19 -0.05 16 14 O -0.65 -1.66 10.16 -51.53 -0.52 -2.19 16 15 S 2.69 8.89 5.48 -107.50 -0.59 8.30 16 16 O -0.92 -5.60 17.63 -66.81 -1.18 -6.78 16 17 O -0.95 -3.93 15.95 -66.81 -1.07 -5.00 16 18 C -0.71 -1.51 5.16 -41.21 -0.21 -1.72 16 19 C -0.07 -0.06 9.71 29.03 0.28 0.22 16 20 S 0.16 0.11 20.58 -107.50 -2.21 -2.10 16 21 C -0.19 -0.27 5.76 -36.00 -0.21 -0.48 16 22 C -0.04 0.02 2.95 36.01 0.11 0.13 16 23 O -0.54 0.22 12.83 -35.23 -0.45 -0.24 16 24 Si 0.89 -0.82 26.25 -169.99 -4.46 -5.28 16 25 H -0.23 0.10 7.11 56.52 0.40 0.50 16 26 H -0.23 -0.05 7.11 56.52 0.40 0.35 16 27 H -0.23 0.32 7.11 56.52 0.40 0.73 16 28 C -0.04 -0.08 9.56 -41.21 -0.39 -0.48 16 29 C -0.17 -0.13 7.21 -39.29 -0.28 -0.41 16 30 H 0.06 -0.11 7.79 -51.93 -0.40 -0.51 16 31 H 0.06 -0.05 8.14 -51.93 -0.42 -0.47 16 32 H 0.06 -0.07 7.96 -51.93 -0.41 -0.48 16 33 H 0.06 -0.12 7.79 -51.93 -0.40 -0.52 16 34 H 0.06 -0.07 8.14 -51.93 -0.42 -0.49 16 35 H 0.06 -0.13 7.79 -51.93 -0.40 -0.54 16 36 H 0.06 -0.04 7.97 -51.93 -0.41 -0.45 16 37 H 0.06 -0.03 8.14 -51.93 -0.42 -0.46 16 38 H 0.06 -0.06 7.79 -51.93 -0.40 -0.47 16 39 H 0.07 -0.13 7.38 -51.93 -0.38 -0.51 16 40 H 0.08 -0.17 7.79 -51.93 -0.40 -0.57 16 41 H 0.08 -0.17 7.79 -51.93 -0.40 -0.57 16 42 H 0.07 -0.04 7.79 -51.93 -0.40 -0.44 16 43 H 0.08 -0.10 7.79 -51.93 -0.40 -0.51 16 44 H 0.07 -0.01 7.38 -51.93 -0.38 -0.40 16 45 H 0.15 -0.49 8.06 -52.48 -0.42 -0.91 16 46 H 0.15 -0.65 8.06 -52.49 -0.42 -1.08 16 47 H 0.15 -0.17 8.06 -52.49 -0.42 -0.59 16 48 H 0.19 -0.20 8.00 -52.48 -0.42 -0.62 16 49 H 0.09 -0.22 7.96 -51.93 -0.41 -0.63 16 50 H 0.38 -1.90 8.74 45.56 0.40 -1.50 16 51 H 0.16 0.28 7.96 -52.49 -0.42 -0.14 16 52 H 0.15 0.00 7.91 -52.49 -0.42 -0.42 16 LS Contribution 447.66 15.07 6.75 6.75 Total: 0.00 -8.29 447.66 -12.42 -20.71 By element: Atomic # 1 Polarization: -4.27 SS G_CDS: -7.43 Total: -11.70 kcal Atomic # 6 Polarization: 0.54 SS G_CDS: 0.32 Total: 0.86 kcal Atomic # 8 Polarization: -10.80 SS G_CDS: -3.38 Total: -14.18 kcal Atomic # 14 Polarization: -2.76 SS G_CDS: -5.87 Total: -8.63 kcal Atomic # 16 Polarization: 9.00 SS G_CDS: -2.80 Total: 6.20 kcal Total LS contribution 6.75 Total: 6.75 kcal Total: -8.29 -12.42 -20.71 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_40_15065182_15065232.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -137.547 kcal (2) G-P(sol) polarization free energy of solvation -8.291 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -145.839 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.418 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -20.709 kcal (6) G-S(sol) free energy of system = (1) + (5) -158.256 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.15 seconds