Wall clock time and date at job start Tue Mar 9 2021 12:57:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52993 * 109.47335 * 2 1 4 4 C 1.53002 * 109.47112 * 239.99361 * 2 1 3 5 5 Si 1.86304 * 109.46745 * 119.99890 * 2 1 3 6 6 C 1.86301 * 109.47092 * 299.99791 * 5 2 1 7 7 C 1.86294 * 109.47287 * 179.97438 * 5 2 1 8 8 O 1.63104 * 109.47445 * 59.99538 * 5 2 1 9 9 C 1.35890 * 113.99868 * 179.97438 * 8 5 2 10 10 C 1.38753 * 120.02689 * 90.00594 * 9 8 5 11 11 C 1.38201 * 120.05811 * 179.97438 * 10 9 8 12 12 C 1.38157 * 120.10546 * 359.97197 * 11 10 9 13 13 C 1.38794 * 120.05517 * 0.28103 * 12 11 10 14 14 O 1.35891 * 120.02534 * 179.69942 * 13 12 11 15 15 S 1.52196 * 114.00296 * 90.00099 * 14 13 12 16 16 O 1.42100 * 106.40768 * 188.54050 * 15 14 13 17 17 O 1.42104 * 106.40010 * 321.45848 * 15 14 13 18 18 C 1.76202 * 107.22072 * 74.99417 * 15 14 13 19 19 C 1.33381 * 122.54102 * 269.71198 * 18 15 14 20 20 S 1.75886 * 109.59285 * 179.90175 * 19 18 15 21 21 C 1.75880 * 90.96910 * 0.30675 * 20 19 18 22 22 C 1.50706 * 125.20469 * 179.79587 * 21 20 19 23 23 O 1.42894 * 109.47486 * 120.03690 * 22 21 20 24 24 Si 1.86303 * 109.46785 * 0.03621 * 22 21 20 25 25 H 1.48500 * 109.47095 * 300.00303 * 24 22 21 26 26 H 1.48500 * 109.47241 * 60.00187 * 24 22 21 27 27 H 1.48502 * 109.46815 * 180.02562 * 24 22 21 28 28 C 1.33390 * 109.59882 * 359.82446 * 21 20 19 29 29 C 1.38618 * 119.94512 * 359.46856 * 13 12 11 30 30 H 1.08995 * 109.46784 * 300.00816 * 1 2 3 31 31 H 1.09004 * 109.46459 * 60.00434 * 1 2 3 32 32 H 1.08990 * 109.47208 * 180.02562 * 1 2 3 33 33 H 1.09004 * 109.46881 * 180.02562 * 3 2 1 34 34 H 1.09004 * 109.46992 * 299.99239 * 3 2 1 35 35 H 1.08995 * 109.47851 * 59.99838 * 3 2 1 36 36 H 1.09003 * 109.47021 * 300.00421 * 4 2 1 37 37 H 1.08994 * 109.46866 * 60.00393 * 4 2 1 38 38 H 1.08998 * 109.47141 * 180.02562 * 4 2 1 39 39 H 1.08995 * 109.47792 * 180.02562 * 6 5 2 40 40 H 1.09003 * 109.47227 * 300.00442 * 6 5 2 41 41 H 1.08998 * 109.47185 * 59.99751 * 6 5 2 42 42 H 1.09001 * 109.47088 * 300.00306 * 7 5 2 43 43 H 1.09003 * 109.47126 * 59.99496 * 7 5 2 44 44 H 1.08995 * 109.47734 * 179.97438 * 7 5 2 45 45 H 1.08005 * 119.97401 * 359.97437 * 10 9 8 46 46 H 1.07994 * 119.94610 * 179.97438 * 11 10 9 47 47 H 1.08002 * 119.96818 * 179.97438 * 12 11 10 48 48 H 1.08003 * 125.20452 * 0.02845 * 19 18 15 49 49 H 1.09002 * 109.47170 * 240.04050 * 22 21 20 50 50 H 0.96701 * 114.00098 * 180.02562 * 23 22 21 51 51 H 1.07990 * 122.54387 * 179.97438 * 28 21 20 52 52 H 1.07993 * 120.05341 * 180.25575 * 29 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 2.0401 -0.7214 -1.2492 5 14 2.1510 -0.8782 1.5212 6 6 1.5299 0.0001 3.0423 7 6 4.0139 -0.8790 1.5210 8 8 1.6072 -2.4160 1.5214 9 6 2.0086 -3.1440 2.5963 10 6 1.2330 -3.1693 3.7465 11 6 1.6403 -3.9100 4.8399 12 6 2.8200 -4.6274 4.7904 13 6 3.6020 -4.6011 3.6439 14 8 4.7652 -5.3020 3.5981 15 16 4.6100 -6.7263 3.0845 16 8 5.8619 -7.3661 3.2910 17 8 3.3890 -7.2158 3.6220 18 6 4.3822 -6.6298 1.3399 19 6 3.1767 -6.5286 0.7783 20 16 3.3453 -6.4536 -0.9709 21 6 5.0947 -6.5766 -0.8374 22 6 6.0560 -6.5878 -1.9980 23 8 6.9549 -5.4831 -1.8827 24 14 5.1043 -6.4501 -3.5937 25 1 4.1701 -7.5982 -3.7136 26 1 4.3328 -5.1813 -3.6021 27 1 6.0515 -6.4618 -4.7375 28 6 5.4407 -6.6592 0.4482 29 6 3.1929 -3.8631 2.5441 30 1 -0.3633 0.5139 0.8899 31 1 -0.3632 0.5138 -0.8901 32 1 -0.3633 -1.0276 0.0005 33 1 3.1301 1.4423 -0.0005 34 1 1.6769 1.9562 -0.8901 35 1 1.6768 1.9564 0.8899 36 1 1.6767 -1.7491 -1.2491 37 1 1.6768 -0.2076 -2.1391 38 1 3.1301 -0.7218 -1.2490 39 1 1.8935 -0.5134 3.9323 40 1 1.8933 1.0278 3.0423 41 1 0.4400 0.0002 3.0422 42 1 4.3769 -1.3931 0.6310 43 1 4.3777 0.1485 1.5207 44 1 4.3772 -1.3924 2.4112 45 1 0.3101 -2.6097 3.7875 46 1 1.0355 -3.9280 5.7344 47 1 3.1364 -5.2051 5.6462 48 1 2.2403 -6.4956 1.3155 49 1 6.6222 -7.5192 -1.9919 50 1 7.6033 -5.4272 -2.5980 51 1 6.4684 -6.7430 0.7690 52 1 3.7979 -3.8448 1.6498 RHF calculation, no. of doubly occupied orbitals= 72 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_40_15065182_15065232.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 12:57:00 Heat of formation + Delta-G solvation = -153.748306 kcal Electronic energy + Delta-G solvation = -37262.310223 eV Core-core repulsion = 32570.711831 eV Total energy + Delta-G solvation = -4691.598392 eV No. of doubly occupied orbitals = 72 Molecular weight (most abundant/longest-lived isotopes) = 430.099 amu Computer time = 1.15 seconds Orbital eigenvalues (eV) -42.37509 -40.33810 -39.50973 -38.63557 -37.60167 -37.39858 -37.31961 -36.88912 -32.22089 -31.74775 -30.80887 -29.31582 -29.09711 -27.88316 -27.42388 -27.29419 -25.21156 -24.73571 -23.90927 -21.94026 -21.13634 -20.48937 -19.77009 -19.13884 -18.98531 -18.55655 -18.35805 -17.64118 -17.53074 -17.35809 -16.52835 -16.46471 -16.08812 -15.83450 -15.78510 -15.05955 -15.00253 -14.89081 -14.79275 -14.77429 -14.52544 -14.29146 -14.20505 -14.16424 -14.06393 -13.74147 -13.55546 -13.48870 -13.45818 -13.36102 -13.25897 -13.18443 -12.98474 -12.95220 -12.92963 -12.77269 -12.71026 -12.48742 -12.43932 -12.20742 -12.18024 -12.15797 -11.70697 -11.69487 -11.66424 -10.62942 -10.60771 -10.22273 -10.20835 -10.15990 -9.91343 -9.68409 -1.19740 -0.62531 -0.08630 -0.03131 0.18362 0.45098 0.77404 0.98227 1.15223 1.32714 1.37621 1.41276 1.60239 1.80039 1.92817 2.23296 2.33672 2.48825 2.91494 3.27749 3.55894 3.66053 3.70956 3.81072 3.86225 3.90101 4.06796 4.08040 4.09731 4.13226 4.26278 4.38672 4.43889 4.53670 4.65413 4.66823 4.76224 4.77673 4.79674 4.80824 4.82572 4.83534 4.94115 4.95933 4.97832 5.06962 5.07920 5.10230 5.17441 5.19949 5.28036 5.33418 5.38864 5.43306 5.53611 5.61884 5.84635 6.71248 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.372 4.372 3 C -0.143 4.143 4 C -0.142 4.142 5 Si 1.295 2.705 6 C -0.508 4.508 7 C -0.522 4.522 8 O -0.561 6.561 9 C 0.141 3.859 10 C -0.132 4.132 11 C -0.068 4.068 12 C -0.121 4.121 13 C 0.062 3.938 14 O -0.657 6.657 15 S 2.703 3.297 16 O -0.956 6.956 17 O -0.958 6.958 18 C -0.715 4.715 19 C -0.074 4.074 20 S 0.174 5.826 21 C -0.194 4.194 22 C -0.045 4.045 23 O -0.558 6.558 24 Si 0.906 3.094 25 H -0.238 1.238 26 H -0.249 1.249 27 H -0.213 1.213 28 C -0.056 4.056 29 C -0.176 4.176 30 H 0.067 0.933 31 H 0.052 0.948 32 H 0.058 0.942 33 H 0.060 0.940 34 H 0.054 0.946 35 H 0.068 0.932 36 H 0.057 0.943 37 H 0.054 0.946 38 H 0.057 0.943 39 H 0.075 0.925 40 H 0.084 0.916 41 H 0.085 0.915 42 H 0.068 0.932 43 H 0.085 0.915 44 H 0.065 0.935 45 H 0.171 0.829 46 H 0.181 0.819 47 H 0.154 0.846 48 H 0.205 0.795 49 H 0.110 0.890 50 H 0.403 0.597 51 H 0.158 0.842 52 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.660 4.230 -2.392 6.084 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.416 4.416 3 C -0.200 4.200 4 C -0.199 4.199 5 Si 1.429 2.571 6 C -0.612 4.612 7 C -0.624 4.624 8 O -0.514 6.514 9 C 0.097 3.903 10 C -0.152 4.152 11 C -0.086 4.086 12 C -0.142 4.142 13 C 0.021 3.979 14 O -0.616 6.616 15 S 2.796 3.204 16 O -0.955 6.955 17 O -0.957 6.957 18 C -0.815 4.815 19 C -0.213 4.213 20 S 0.438 5.562 21 C -0.311 4.311 22 C -0.157 4.157 23 O -0.368 6.368 24 Si 0.725 3.275 25 H -0.161 1.161 26 H -0.172 1.172 27 H -0.135 1.135 28 C -0.084 4.084 29 C -0.197 4.197 30 H 0.086 0.914 31 H 0.071 0.929 32 H 0.078 0.922 33 H 0.079 0.921 34 H 0.074 0.926 35 H 0.087 0.913 36 H 0.076 0.924 37 H 0.073 0.927 38 H 0.076 0.924 39 H 0.094 0.906 40 H 0.103 0.897 41 H 0.104 0.896 42 H 0.087 0.913 43 H 0.104 0.896 44 H 0.085 0.915 45 H 0.188 0.812 46 H 0.198 0.802 47 H 0.172 0.828 48 H 0.222 0.778 49 H 0.127 0.873 50 H 0.254 0.746 51 H 0.175 0.825 52 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges -5.318 4.120 -3.419 7.546 hybrid contribution 2.177 -0.061 0.148 2.183 sum -3.141 4.059 -3.272 6.087 Atomic orbital electron populations 1.21587 0.93494 1.02139 1.02467 1.25760 1.00942 1.02970 1.11925 1.21621 1.01227 0.94413 1.02723 1.21601 1.00961 1.00164 0.97207 0.76816 0.62549 0.51642 0.66061 1.26950 1.07759 1.09786 1.16671 1.27192 1.25377 1.05398 1.04445 1.83832 1.77572 1.45729 1.44264 1.17787 0.91584 0.94399 0.86524 1.21950 1.01571 1.00492 0.91150 1.21387 0.94314 0.93082 0.99779 1.21686 0.95065 1.00291 0.97110 1.18061 0.83161 0.99514 0.97201 1.85761 1.42804 1.47313 1.85744 1.01652 0.73019 0.72450 0.73286 1.93592 1.44551 1.71971 1.85367 1.93610 1.46991 1.78463 1.76642 1.29914 0.99719 1.24412 1.27445 1.26153 1.01145 0.95354 0.98632 1.84383 1.01220 1.67253 1.03306 1.24179 0.96992 1.11529 0.98444 1.24117 0.95176 0.93776 1.02664 1.86461 1.48733 1.47524 1.54096 0.86137 0.81627 0.82303 0.77402 1.16075 1.17233 1.13458 1.19656 0.99616 0.98215 0.90919 1.21502 0.98267 1.00701 0.99210 0.91402 0.92939 0.92249 0.92069 0.92645 0.91299 0.92443 0.92730 0.92425 0.90636 0.89711 0.89611 0.91250 0.89641 0.91540 0.81187 0.80164 0.82834 0.77821 0.87255 0.74560 0.82476 0.83594 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 0.39 7.85 71.98 0.56 0.96 16 2 C -0.37 0.94 0.53 -10.79 -0.01 0.94 16 3 C -0.14 0.46 7.85 71.98 0.56 1.03 16 4 C -0.14 0.12 7.85 71.98 0.56 0.68 16 5 Si 1.29 -4.31 8.27 68.60 0.57 -3.74 16 6 C -0.51 2.53 8.31 113.37 0.94 3.47 16 7 C -0.52 0.25 8.31 113.37 0.94 1.19 16 8 O -0.56 0.52 8.52 -92.31 -0.79 -0.27 16 9 C 0.14 -0.05 4.63 22.49 0.10 0.06 16 10 C -0.13 0.56 8.77 22.38 0.20 0.76 16 11 C -0.07 0.32 10.04 22.24 0.22 0.55 16 12 C -0.12 -0.05 9.19 22.38 0.21 0.15 16 13 C 0.06 0.26 4.80 22.49 0.11 0.37 16 14 O -0.66 -4.62 10.16 -61.60 -0.63 -5.24 16 15 S 2.70 23.11 5.48 -56.49 -0.31 22.80 16 16 O -0.96 -14.07 17.63 -118.78 -2.09 -16.17 16 17 O -0.96 -9.28 15.95 -118.78 -1.90 -11.18 16 18 C -0.72 -4.15 5.16 21.22 0.11 -4.04 16 19 C -0.07 -0.19 9.71 66.72 0.65 0.46 16 20 S 0.17 0.34 20.58 -56.49 -1.16 -0.83 16 21 C -0.19 -0.73 5.76 24.59 0.14 -0.59 16 22 C -0.04 0.04 2.95 71.24 0.21 0.25 16 23 O -0.56 0.26 12.83 -148.98 -1.91 -1.65 16 24 Si 0.91 -1.74 26.25 68.60 1.80 0.06 16 25 H -0.24 0.22 7.11 99.48 0.71 0.92 16 26 H -0.25 -0.29 7.11 99.48 0.71 0.42 16 27 H -0.21 0.83 7.11 99.48 0.71 1.54 16 28 C -0.06 -0.34 9.56 21.22 0.20 -0.14 16 29 C -0.18 -0.42 7.21 22.46 0.16 -0.26 16 30 H 0.07 -0.34 7.79 -2.39 -0.02 -0.36 16 31 H 0.05 -0.09 8.14 -2.38 -0.02 -0.11 16 32 H 0.06 -0.16 7.96 -2.39 -0.02 -0.18 16 33 H 0.06 -0.24 7.79 -2.39 -0.02 -0.26 16 34 H 0.05 -0.13 8.14 -2.38 -0.02 -0.14 16 35 H 0.07 -0.37 7.79 -2.39 -0.02 -0.39 16 36 H 0.06 -0.03 7.97 -2.39 -0.02 -0.05 16 37 H 0.05 -0.02 8.14 -2.39 -0.02 -0.04 16 38 H 0.06 -0.07 7.79 -2.39 -0.02 -0.09 16 39 H 0.07 -0.38 7.38 -2.39 -0.02 -0.40 16 40 H 0.08 -0.47 7.79 -2.39 -0.02 -0.49 16 41 H 0.08 -0.56 7.79 -2.39 -0.02 -0.58 16 42 H 0.07 0.04 7.79 -2.39 -0.02 0.02 16 43 H 0.08 -0.17 7.79 -2.39 -0.02 -0.19 16 44 H 0.07 0.06 7.38 -2.39 -0.02 0.04 16 45 H 0.17 -1.60 8.06 -2.91 -0.02 -1.62 16 46 H 0.18 -2.08 8.06 -2.91 -0.02 -2.10 16 47 H 0.15 -0.30 8.06 -2.91 -0.02 -0.33 16 48 H 0.20 -0.33 8.00 -2.91 -0.02 -0.36 16 49 H 0.11 -0.56 7.96 -2.39 -0.02 -0.58 16 50 H 0.40 -4.03 8.74 -74.06 -0.65 -4.67 16 51 H 0.16 0.91 7.96 -2.92 -0.02 0.89 16 52 H 0.15 0.27 7.91 -2.91 -0.02 0.24 16 Total: 0.00 -19.75 447.66 0.50 -19.24 By element: Atomic # 1 Polarization: -9.91 SS G_CDS: 1.03 Total: -8.88 kcal Atomic # 6 Polarization: -0.05 SS G_CDS: 5.88 Total: 5.84 kcal Atomic # 8 Polarization: -27.19 SS G_CDS: -7.31 Total: -34.51 kcal Atomic # 14 Polarization: -6.04 SS G_CDS: 2.37 Total: -3.68 kcal Atomic # 16 Polarization: 23.45 SS G_CDS: -1.47 Total: 21.97 kcal Total: -19.75 0.50 -19.24 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_40_15065182_15065232.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -134.504 kcal (2) G-P(sol) polarization free energy of solvation -19.746 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -154.250 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.502 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -19.245 kcal (6) G-S(sol) free energy of system = (1) + (5) -153.748 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.15 seconds