Wall clock time and date at job start Tue Mar 9 2021 13:01:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46505 * 1 3 3 C 1.46497 * 119.99958 * 2 1 4 4 C 1.53004 * 109.46990 * 278.29213 * 3 2 1 5 5 H 1.08997 * 112.84726 * 45.33312 * 4 3 2 6 6 C 1.53774 * 113.61647 * 176.53250 * 4 3 2 7 7 C 1.53777 * 87.08247 * 139.98259 * 6 4 3 8 8 H 1.08995 * 113.61724 * 89.11865 * 7 6 4 9 9 O 1.42903 * 113.61533 * 219.93799 * 7 6 4 10 10 C 1.42906 * 113.99943 * 210.00369 * 9 7 6 11 11 C 1.52994 * 109.47235 * 59.99233 * 10 9 7 12 12 C 1.53004 * 109.47105 * 179.97438 * 10 9 7 13 13 C 1.53002 * 109.46650 * 299.99223 * 10 9 7 14 14 C 1.53787 * 113.61565 * 274.14240 * 4 3 2 15 15 S 1.65594 * 119.99773 * 179.97438 * 2 1 3 16 16 O 1.42103 * 106.40207 * 161.17188 * 15 2 1 17 17 O 1.42106 * 106.40296 * 28.25377 * 15 2 1 18 18 C 1.76205 * 107.22056 * 274.71462 * 15 2 1 19 19 C 1.33384 * 122.53692 * 195.53468 * 18 15 2 20 20 C 1.50699 * 125.20696 * 0.02562 * 19 18 15 21 21 O 1.42897 * 109.47118 * 321.04302 * 20 19 18 22 22 Si 1.86302 * 109.47226 * 201.04372 * 20 19 18 23 23 S 1.75886 * 109.59130 * 180.02562 * 19 18 15 24 24 C 1.75876 * 90.96872 * 359.97438 * 23 19 18 25 25 C 1.33384 * 109.59760 * 359.73034 * 24 23 19 26 26 H 1.09000 * 109.47208 * 270.00508 * 1 2 3 27 27 H 1.09001 * 109.46792 * 30.00425 * 1 2 3 28 28 H 1.08991 * 109.47170 * 150.00362 * 1 2 3 29 29 H 1.08994 * 109.47886 * 38.29331 * 3 2 1 30 30 H 1.09003 * 109.46981 * 158.29834 * 3 2 1 31 31 H 1.08997 * 113.61567 * 254.53402 * 6 4 3 32 32 H 1.09003 * 113.61679 * 25.43370 * 6 4 3 33 33 H 1.09003 * 109.46931 * 60.00835 * 11 10 9 34 34 H 1.09004 * 109.47055 * 179.97438 * 11 10 9 35 35 H 1.09000 * 109.47716 * 300.00175 * 11 10 9 36 36 H 1.09000 * 109.46980 * 59.99581 * 12 10 9 37 37 H 1.08993 * 109.46984 * 179.97438 * 12 10 9 38 38 H 1.09002 * 109.46714 * 299.99942 * 12 10 9 39 39 H 1.09000 * 109.46910 * 60.00677 * 13 10 9 40 40 H 1.09003 * 109.47203 * 179.97438 * 13 10 9 41 41 H 1.09000 * 109.47525 * 300.00474 * 13 10 9 42 42 H 1.09002 * 113.60767 * 334.56453 * 14 4 3 43 43 H 1.08996 * 113.61254 * 105.46930 * 14 4 3 44 44 H 1.09002 * 109.46970 * 81.04095 * 20 19 18 45 45 H 0.96703 * 113.99870 * 179.97438 * 21 20 19 46 46 H 1.48504 * 110.00217 * 298.67941 * 22 20 19 47 47 H 1.48495 * 110.00184 * 60.00119 * 22 20 19 48 48 H 1.08007 * 125.20013 * 180.02562 * 24 23 19 49 49 H 1.08002 * 122.54669 * 180.24598 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.2723 1.8144 -1.4275 5 1 1.3186 1.7592 -1.9522 6 6 2.9509 3.1908 -1.5261 7 6 3.6276 2.6779 -2.8082 8 1 3.0451 2.8584 -3.7115 9 8 4.9917 3.0837 -2.9372 10 6 5.4275 3.2356 -4.2897 11 6 4.5728 4.2972 -4.9847 12 6 6.8943 3.6706 -4.3071 13 6 5.2819 1.9018 -5.0251 14 6 3.4546 1.2581 -2.2385 15 16 2.2930 -1.4341 0.0006 16 8 3.6110 -1.1367 -0.4394 17 8 1.4536 -2.3823 -0.6443 18 6 2.4340 -1.9543 1.6782 19 6 3.2915 -2.8992 2.0667 20 6 4.2387 -3.6396 1.1580 21 8 3.5871 -3.9202 -0.0825 22 14 4.7518 -5.2383 1.9654 23 16 3.1478 -3.1489 3.8018 24 6 1.8947 -1.9191 3.9051 25 6 1.6676 -1.4089 2.6938 26 1 -0.3633 0.0001 1.0277 27 1 -0.3633 0.8900 -0.5139 28 1 -0.3633 -0.8899 -0.5137 29 1 1.6808 1.9867 0.6368 30 1 3.2061 1.1059 0.3800 31 1 2.2533 4.0102 -1.6984 32 1 3.6498 3.3923 -0.7141 33 1 4.6767 5.2474 -4.4608 34 1 4.9056 4.4134 -6.0162 35 1 3.5278 3.9878 -4.9723 36 1 7.5034 2.9144 -3.8117 37 1 7.2268 3.7860 -5.3386 38 1 6.9977 4.6208 -3.7831 39 1 4.2368 1.5924 -5.0127 40 1 5.6138 2.0177 -6.0569 41 1 5.8907 1.1454 -4.5299 42 1 4.2913 0.9302 -1.6216 43 1 3.1629 0.5196 -2.9852 44 1 5.1205 -3.0258 0.9745 45 1 4.1393 -4.3961 -0.7179 46 1 5.4588 -4.9590 3.2411 47 1 3.5584 -6.0842 2.2208 48 1 1.3899 -1.6193 4.8116 49 1 0.9381 -0.6322 2.5179 There are 65 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 65 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_40_15093196_14772022.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 13:01:05 Heat of formation + Delta-G solvation = -79.629711 kcal Electronic energy + Delta-G solvation = -32231.683444 eV Core-core repulsion = 27994.827642 eV Total energy + Delta-G solvation = -4236.855801 eV No. of doubly occupied orbitals = 65 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 376.126 amu Computer time = 1.65 seconds Orbital eigenvalues (eV) -40.83088 -39.50712 -38.75079 -37.92613 -37.63669 -36.56961 -36.40972 -33.68389 -31.97259 -29.63430 -28.32920 -28.28538 -27.53086 -26.64061 -26.23615 -24.30027 -23.39281 -21.63612 -20.78811 -20.45429 -19.58275 -18.90119 -18.52001 -17.94826 -17.77138 -17.59273 -17.04535 -16.50943 -16.22663 -15.84636 -15.68155 -15.52059 -15.27009 -15.15688 -14.83050 -14.50923 -14.41939 -14.33948 -14.13900 -13.84220 -13.70966 -13.43702 -13.37552 -13.21121 -13.13989 -12.92847 -12.87280 -12.74481 -12.74083 -12.61472 -12.58201 -12.52473 -12.47441 -12.09640 -12.01012 -11.91898 -11.72989 -11.64512 -11.24937 -11.13382 -10.84397 -10.22336 -10.07893 -10.04016 -9.77666 -5.31977 -0.54264 -0.48467 0.32482 0.65777 0.99022 1.17776 1.46023 1.78711 2.02372 2.82594 2.93007 3.04481 3.42158 3.54196 3.70398 3.75587 3.84275 3.90071 3.92049 3.97914 4.04764 4.08034 4.13400 4.16712 4.22061 4.27146 4.38372 4.45335 4.51984 4.56461 4.63354 4.68375 4.75016 4.79388 4.83313 4.83640 4.87112 4.89749 4.96119 4.96483 5.00084 5.04389 5.09396 5.17771 5.20505 5.34235 5.38970 5.42890 5.55259 5.58921 6.39298 6.55164 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.078 3.922 2 N -1.004 6.004 3 C 0.134 3.866 4 C -0.133 4.133 5 H 0.096 0.904 6 C -0.127 4.127 7 C 0.060 3.940 8 H 0.088 0.912 9 O -0.361 6.361 10 C 0.105 3.895 11 C -0.179 4.179 12 C -0.139 4.139 13 C -0.177 4.177 14 C -0.150 4.150 15 S 2.719 3.281 16 O -0.941 6.941 17 O -0.938 6.938 18 C -0.660 4.660 19 C -0.056 4.056 20 C -0.077 4.077 21 O -0.545 6.545 22 Si 0.691 3.309 23 S 0.137 5.863 24 C -0.209 4.209 25 C -0.084 4.084 26 H 0.055 0.945 27 H 0.081 0.919 28 H 0.084 0.916 29 H 0.082 0.918 30 H 0.089 0.911 31 H 0.073 0.927 32 H 0.093 0.907 33 H 0.064 0.936 34 H 0.066 0.934 35 H 0.058 0.942 36 H 0.064 0.936 37 H 0.069 0.931 38 H 0.063 0.937 39 H 0.058 0.942 40 H 0.064 0.936 41 H 0.066 0.934 42 H 0.106 0.894 43 H 0.064 0.936 44 H 0.109 0.891 45 H 0.400 0.600 46 H -0.234 1.234 47 H -0.235 1.235 48 H 0.177 0.823 49 H 0.153 0.847 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.599 1.338 0.441 1.531 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 N -0.843 5.843 3 C 0.009 3.991 4 C -0.153 4.153 5 H 0.114 0.886 6 C -0.165 4.165 7 C 0.002 3.998 8 H 0.106 0.894 9 O -0.280 6.280 10 C 0.066 3.934 11 C -0.236 4.236 12 C -0.196 4.196 13 C -0.234 4.234 14 C -0.188 4.188 15 S 2.804 3.196 16 O -0.931 6.931 17 O -0.928 6.928 18 C -0.757 4.757 19 C -0.176 4.176 20 C -0.188 4.188 21 O -0.355 6.355 22 Si 0.588 3.412 23 S 0.400 5.600 24 C -0.344 4.344 25 C -0.112 4.112 26 H 0.073 0.927 27 H 0.099 0.901 28 H 0.103 0.897 29 H 0.100 0.900 30 H 0.108 0.892 31 H 0.091 0.909 32 H 0.112 0.888 33 H 0.083 0.917 34 H 0.085 0.915 35 H 0.077 0.923 36 H 0.083 0.917 37 H 0.088 0.912 38 H 0.082 0.918 39 H 0.077 0.923 40 H 0.083 0.917 41 H 0.085 0.915 42 H 0.124 0.876 43 H 0.083 0.917 44 H 0.127 0.873 45 H 0.251 0.749 46 H -0.158 1.158 47 H -0.158 1.158 48 H 0.194 0.806 49 H 0.170 0.830 Dipole moment (debyes) X Y Z Total from point charges 1.140 -0.226 2.026 2.335 hybrid contribution -1.343 1.511 -0.342 2.050 sum -0.203 1.285 1.684 2.128 Atomic orbital electron populations 1.21676 0.78203 1.04730 1.02084 1.57579 1.15452 1.21713 1.89584 1.21351 0.96862 0.84401 0.96493 1.22782 0.98922 0.96904 0.96688 0.88563 1.23199 0.98862 0.96113 0.98319 1.23659 0.83553 0.95139 0.97483 0.89422 1.88037 1.26514 1.88079 1.25355 1.21518 0.95113 0.94166 0.82645 1.22469 1.00202 0.99626 1.01298 1.21765 0.93320 1.02195 1.02302 1.22473 1.02535 0.97566 1.00852 1.23730 0.98645 0.96477 0.99904 1.01619 0.73492 0.71664 0.72789 1.93547 1.37042 1.83854 1.78680 1.93573 1.68311 1.59492 1.71385 1.30067 1.08232 1.09903 1.27497 1.23601 0.98831 0.97175 0.97988 1.24567 0.96075 1.08990 0.89185 1.86355 1.43411 1.80595 1.25088 0.94463 0.84943 0.78991 0.82806 1.84451 1.35873 1.38009 1.01642 1.25887 1.03427 1.02639 1.02429 1.19741 0.99832 1.00996 0.90623 0.92681 0.90064 0.89715 0.90007 0.89242 0.90867 0.88846 0.91682 0.91463 0.92273 0.91722 0.91175 0.91835 0.92312 0.91664 0.91520 0.87580 0.91696 0.87327 0.74890 1.15762 1.15817 0.80602 0.82976 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 25. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 -0.09 10.47 59.85 0.63 0.53 16 2 N -1.00 -0.70 2.64 -121.76 -0.32 -1.03 16 3 C 0.13 -0.05 5.23 -4.04 -0.02 -0.07 16 4 C -0.13 0.01 3.93 -89.81 -0.35 -0.34 16 5 H 0.10 -0.08 8.06 -51.93 -0.42 -0.50 16 6 C -0.13 0.02 7.47 -25.92 -0.19 -0.17 16 7 C 0.06 0.07 2.82 -25.83 -0.07 0.00 16 8 H 0.09 0.03 5.54 -51.93 -0.29 -0.26 16 9 O -0.36 -1.03 10.00 -35.23 -0.35 -1.39 16 10 C 0.10 0.13 1.11 -90.62 -0.10 0.03 16 11 C -0.18 -0.02 8.38 37.15 0.31 0.29 16 12 C -0.14 -0.08 8.84 37.16 0.33 0.25 16 13 C -0.18 -0.14 8.39 37.16 0.31 0.18 16 14 C -0.15 -0.29 6.66 -25.82 -0.17 -0.46 16 15 S 2.72 10.74 4.09 -107.50 -0.44 10.30 16 16 O -0.94 -4.66 14.05 -62.88 -0.88 -5.55 16 17 O -0.94 -6.55 15.70 -64.73 -1.02 -7.57 16 18 C -0.66 -2.39 5.72 -41.21 -0.24 -2.62 16 19 C -0.06 -0.20 5.77 -36.00 -0.21 -0.41 16 20 C -0.08 -0.11 2.34 36.01 0.08 -0.03 16 21 O -0.55 -1.17 9.58 -60.47 -0.58 -1.75 16 22 Si 0.69 -0.43 31.19 -169.99 -5.30 -5.74 16 23 S 0.14 0.29 20.87 -107.50 -2.24 -1.95 16 24 C -0.21 -0.20 11.23 29.04 0.33 0.13 16 25 C -0.08 -0.13 9.74 -41.21 -0.40 -0.53 16 26 H 0.05 -0.16 7.03 -51.93 -0.36 -0.53 16 27 H 0.08 -0.24 7.99 -51.93 -0.41 -0.65 16 28 H 0.08 0.00 7.06 -51.93 -0.37 -0.37 16 29 H 0.08 -0.21 8.13 -51.93 -0.42 -0.63 16 30 H 0.09 0.01 7.09 -51.93 -0.37 -0.35 16 31 H 0.07 -0.09 8.14 -51.93 -0.42 -0.51 16 32 H 0.09 0.01 8.10 -51.93 -0.42 -0.41 16 33 H 0.06 0.03 8.14 -51.93 -0.42 -0.40 16 34 H 0.07 -0.05 8.14 -51.93 -0.42 -0.47 16 35 H 0.06 -0.01 6.24 -51.93 -0.32 -0.33 16 36 H 0.06 0.06 8.14 -51.93 -0.42 -0.36 16 37 H 0.07 -0.05 8.14 -51.93 -0.42 -0.47 16 38 H 0.06 0.05 8.14 -51.93 -0.42 -0.38 16 39 H 0.06 0.05 7.02 -51.93 -0.36 -0.32 16 40 H 0.06 -0.02 8.14 -51.93 -0.42 -0.44 16 41 H 0.07 0.10 8.14 -51.93 -0.42 -0.32 16 42 H 0.11 0.39 7.12 -51.93 -0.37 0.02 16 43 H 0.06 0.15 8.14 -51.93 -0.42 -0.27 16 44 H 0.11 -0.02 7.96 -51.93 -0.41 -0.43 16 45 H 0.40 -1.32 8.74 45.56 0.40 -0.92 16 46 H -0.23 -0.15 7.11 56.52 0.40 0.26 16 47 H -0.23 -0.55 7.11 56.52 0.40 -0.15 16 48 H 0.18 -0.34 8.06 -52.48 -0.42 -0.76 16 49 H 0.15 -0.18 6.43 -52.49 -0.34 -0.51 16 LS Contribution 404.30 15.07 6.09 6.09 Total: 0.00 -9.57 404.30 -12.72 -22.29 By element: Atomic # 1 Polarization: -2.58 SS G_CDS: -7.90 Total: -10.48 kcal Atomic # 6 Polarization: -3.47 SS G_CDS: 0.23 Total: -3.24 kcal Atomic # 7 Polarization: -0.70 SS G_CDS: -0.32 Total: -1.03 kcal Atomic # 8 Polarization: -13.42 SS G_CDS: -2.83 Total: -16.25 kcal Atomic # 14 Polarization: -0.43 SS G_CDS: -5.30 Total: -5.74 kcal Atomic # 16 Polarization: 11.03 SS G_CDS: -2.68 Total: 8.35 kcal Total LS contribution 6.09 Total: 6.09 kcal Total: -9.57 -12.72 -22.29 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_40_15093196_14772022.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -57.339 kcal (2) G-P(sol) polarization free energy of solvation -9.574 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.913 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.717 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -22.291 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.630 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.66 seconds