Wall clock time and date at job start Tue Mar 9 2021 13:01:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46509 * 1 3 3 C 1.46501 * 119.99737 * 2 1 4 4 C 1.53006 * 109.46697 * 85.00039 * 3 2 1 5 5 H 1.08991 * 112.85428 * 316.19408 * 4 3 2 6 6 C 1.53783 * 113.60938 * 87.50437 * 4 3 2 7 7 C 1.53784 * 87.08184 * 139.98101 * 6 4 3 8 8 H 1.08997 * 113.69263 * 89.12424 * 7 6 4 9 9 O 1.42899 * 113.61511 * 220.01880 * 7 6 4 10 10 C 1.42895 * 113.99963 * 247.49715 * 9 7 6 11 11 C 1.52997 * 109.47503 * 59.99687 * 10 9 7 12 12 C 1.53006 * 109.47000 * 299.99523 * 10 9 7 13 13 C 1.52999 * 109.47162 * 180.02562 * 10 9 7 14 14 C 1.53785 * 113.61113 * 184.99711 * 4 3 2 15 15 S 1.65591 * 120.00068 * 180.02562 * 2 1 3 16 16 O 1.42098 * 106.40443 * 23.54001 * 15 2 1 17 17 O 1.42098 * 106.40408 * 156.45850 * 15 2 1 18 18 C 1.76199 * 107.21958 * 270.00028 * 15 2 1 19 19 C 1.33385 * 122.54045 * 90.02527 * 18 15 2 20 20 S 1.75888 * 109.59228 * 180.02562 * 19 18 15 21 21 C 1.75880 * 90.97278 * 359.97438 * 20 19 18 22 22 C 1.50698 * 125.20350 * 180.02562 * 21 20 19 23 23 O 1.42902 * 109.46984 * 119.97699 * 22 21 20 24 24 Si 1.86294 * 109.47401 * 359.97438 * 22 21 20 25 25 C 1.33397 * 109.59294 * 359.73181 * 21 20 19 26 26 H 1.08999 * 109.47218 * 89.99906 * 1 2 3 27 27 H 1.09002 * 109.46397 * 209.99683 * 1 2 3 28 28 H 1.08993 * 109.47025 * 329.99445 * 1 2 3 29 29 H 1.08998 * 109.47299 * 325.00424 * 3 2 1 30 30 H 1.08995 * 109.46965 * 204.99987 * 3 2 1 31 31 H 1.08997 * 113.61910 * 25.43293 * 6 4 3 32 32 H 1.09001 * 113.61039 * 254.52597 * 6 4 3 33 33 H 1.09002 * 109.47153 * 60.00043 * 11 10 9 34 34 H 1.09001 * 109.46832 * 300.00234 * 11 10 9 35 35 H 1.09004 * 109.47261 * 180.02562 * 11 10 9 36 36 H 1.08993 * 109.46955 * 180.02562 * 12 10 9 37 37 H 1.09000 * 109.47050 * 300.00235 * 12 10 9 38 38 H 1.09001 * 109.47002 * 59.99969 * 12 10 9 39 39 H 1.09002 * 109.46716 * 299.99480 * 13 10 9 40 40 H 1.09000 * 109.47486 * 59.99398 * 13 10 9 41 41 H 1.09001 * 109.47362 * 180.02562 * 13 10 9 42 42 H 1.08997 * 113.61338 * 105.47361 * 14 4 3 43 43 H 1.08998 * 113.61731 * 334.56710 * 14 4 3 44 44 H 1.07995 * 125.20426 * 359.97438 * 19 18 15 45 45 H 1.09006 * 109.46871 * 239.97278 * 22 21 20 46 46 H 0.96698 * 114.00252 * 299.99862 * 23 22 21 47 47 H 1.48499 * 109.99976 * 58.67969 * 24 22 21 48 48 H 1.48499 * 110.00360 * 180.02562 * 24 22 21 49 49 H 1.07998 * 122.54277 * 180.23804 * 25 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1975 1.2688 0.0000 4 6 2.3436 1.7732 1.4371 5 1 1.4243 1.6777 2.0147 6 6 3.5865 1.2259 2.1586 7 6 3.7573 2.6299 2.7625 8 1 3.2258 2.7694 3.7039 9 8 5.1169 3.0655 2.8231 10 6 5.6292 3.1883 4.1514 11 6 5.5584 1.8305 4.8530 12 6 4.7935 4.2078 4.9281 13 6 7.0840 3.6588 4.0955 14 6 2.9935 3.1633 1.5389 15 16 2.2931 -1.4341 -0.0006 16 8 1.4115 -2.4062 -0.5455 17 8 3.5760 -1.1565 -0.5450 18 6 2.5539 -1.8865 1.6822 19 6 1.6865 -2.6334 2.3670 20 16 2.2811 -2.8758 4.0045 21 6 3.7170 -1.9216 3.6564 22 6 4.8257 -1.6318 4.6350 23 8 6.0569 -2.1497 4.1270 24 14 4.4392 -2.4396 6.2686 25 6 3.6775 -1.4990 2.3918 26 1 -0.3633 0.0000 -1.0276 27 1 -0.3632 -0.8901 0.5138 28 1 -0.3633 0.8899 0.5139 29 1 1.6501 2.0043 -0.5894 30 1 3.1858 1.1178 -0.4343 31 1 4.3929 0.9400 1.4834 32 1 3.3593 0.4575 2.8976 33 1 6.1538 1.1041 4.2997 34 1 4.5219 1.4957 4.8928 35 1 5.9488 1.9243 5.8664 36 1 5.1846 4.3018 5.9411 37 1 4.8440 5.1752 4.4283 38 1 3.7570 3.8731 4.9680 39 1 7.6796 2.9328 3.5420 40 1 7.1340 4.6263 3.5958 41 1 7.4749 3.7521 5.1087 42 1 2.2877 3.9588 1.7775 43 1 3.6379 3.4070 0.6942 44 1 0.7604 -3.0282 1.9761 45 1 4.9148 -0.5544 4.7745 46 1 6.0501 -3.1052 3.9782 47 1 4.2837 -3.9051 6.0863 48 1 5.5248 -2.1607 7.2427 49 1 4.4606 -0.8965 1.9559 There are 65 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 65 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_40_15093196_15065232.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 13:01:09 Heat of formation + Delta-G solvation = -77.640447 kcal Electronic energy + Delta-G solvation = -33343.840987 eV Core-core repulsion = 29107.071446 eV Total energy + Delta-G solvation = -4236.769540 eV No. of doubly occupied orbitals = 65 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 376.126 amu Computer time = 1.89 seconds Orbital eigenvalues (eV) -41.06095 -39.59671 -38.84613 -38.23299 -37.66424 -36.85562 -36.61583 -33.78829 -31.91619 -29.72326 -28.46006 -28.38990 -27.64755 -26.62217 -26.28360 -24.90120 -23.49202 -21.51118 -20.88755 -20.52070 -19.68704 -19.26226 -18.51914 -18.01390 -17.81604 -17.65736 -17.08238 -16.68092 -16.37424 -15.98036 -15.86570 -15.75425 -15.39467 -15.08830 -14.84211 -14.59800 -14.44261 -14.27890 -14.20351 -13.92631 -13.82929 -13.51825 -13.49602 -13.36725 -13.28460 -13.12439 -13.09316 -12.90540 -12.83638 -12.75487 -12.69032 -12.68409 -12.49181 -12.35854 -12.11385 -12.01111 -11.80771 -11.58922 -11.36141 -11.24965 -10.88562 -10.34532 -10.25986 -10.08703 -9.72516 -5.24035 -0.76365 -0.49346 0.29647 0.55577 0.93652 1.13246 1.41075 1.76584 1.95859 2.71604 2.75426 3.12758 3.26028 3.38461 3.55199 3.58326 3.70613 3.75161 3.81412 3.85676 3.88981 3.96914 4.04515 4.09973 4.17632 4.25227 4.35633 4.41617 4.43312 4.53169 4.57323 4.61043 4.70176 4.73190 4.74083 4.78695 4.80469 4.81532 4.85649 4.89197 4.90404 4.92942 4.98821 5.05523 5.08585 5.21518 5.29919 5.32261 5.38213 5.46613 6.21500 6.44587 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.091 3.909 2 N -0.996 5.996 3 C 0.125 3.875 4 C -0.133 4.133 5 H 0.099 0.901 6 C -0.175 4.175 7 C 0.064 3.936 8 H 0.090 0.910 9 O -0.359 6.359 10 C 0.107 3.893 11 C -0.183 4.183 12 C -0.179 4.179 13 C -0.140 4.140 14 C -0.127 4.127 15 S 2.703 3.297 16 O -0.953 6.953 17 O -0.946 6.946 18 C -0.687 4.687 19 C -0.083 4.083 20 S 0.154 5.846 21 C -0.236 4.236 22 C -0.035 4.035 23 O -0.518 6.518 24 Si 0.643 3.357 25 C -0.036 4.036 26 H 0.064 0.936 27 H 0.070 0.930 28 H 0.076 0.924 29 H 0.090 0.910 30 H 0.098 0.902 31 H 0.097 0.903 32 H 0.082 0.918 33 H 0.069 0.931 34 H 0.059 0.941 35 H 0.066 0.934 36 H 0.067 0.933 37 H 0.065 0.935 38 H 0.059 0.941 39 H 0.064 0.936 40 H 0.063 0.937 41 H 0.069 0.931 42 H 0.074 0.926 43 H 0.095 0.905 44 H 0.184 0.816 45 H 0.130 0.870 46 H 0.378 0.622 47 H -0.239 1.239 48 H -0.231 1.231 49 H 0.162 0.838 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.589 2.996 4.992 7.413 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.054 4.054 2 N -0.834 5.834 3 C 0.000 4.000 4 C -0.153 4.153 5 H 0.117 0.883 6 C -0.212 4.212 7 C 0.006 3.994 8 H 0.108 0.892 9 O -0.278 6.278 10 C 0.068 3.932 11 C -0.240 4.240 12 C -0.236 4.236 13 C -0.197 4.197 14 C -0.166 4.166 15 S 2.790 3.210 16 O -0.943 6.943 17 O -0.937 6.937 18 C -0.786 4.786 19 C -0.222 4.222 20 S 0.418 5.582 21 C -0.353 4.353 22 C -0.148 4.148 23 O -0.325 6.325 24 Si 0.541 3.459 25 C -0.065 4.065 26 H 0.082 0.918 27 H 0.089 0.911 28 H 0.095 0.905 29 H 0.109 0.891 30 H 0.117 0.883 31 H 0.116 0.884 32 H 0.100 0.900 33 H 0.088 0.912 34 H 0.078 0.922 35 H 0.085 0.915 36 H 0.086 0.914 37 H 0.084 0.916 38 H 0.077 0.923 39 H 0.083 0.917 40 H 0.082 0.918 41 H 0.088 0.912 42 H 0.092 0.908 43 H 0.113 0.887 44 H 0.201 0.799 45 H 0.147 0.853 46 H 0.227 0.773 47 H -0.162 1.162 48 H -0.154 1.154 49 H 0.179 0.821 Dipole moment (debyes) X Y Z Total from point charges -4.320 1.837 6.062 7.667 hybrid contribution 0.739 0.024 -0.860 1.134 sum -3.581 1.861 5.202 6.584 Atomic orbital electron populations 1.21539 0.77768 1.03277 1.02819 1.57405 1.15364 1.21277 1.89331 1.21512 0.97922 0.84542 0.96072 1.22833 0.98313 0.97150 0.97049 0.88312 1.24320 0.97957 0.98000 1.00970 1.23565 0.83541 0.94330 0.97977 0.89213 1.88060 1.26214 1.87182 1.26387 1.21493 0.94627 0.94106 0.82991 1.22597 1.02360 0.97670 1.01401 1.22472 1.00229 0.99937 1.00971 1.21771 0.93348 1.02138 1.02427 1.23220 0.98479 0.96013 0.98849 1.01878 0.73313 0.72455 0.73378 1.93599 1.66168 1.58666 1.75907 1.93591 1.39938 1.84224 1.75912 1.30110 1.04210 1.15840 1.28456 1.25885 1.02043 0.97256 0.97024 1.84376 1.14523 1.48620 1.10675 1.24930 1.01974 1.08264 1.00140 1.24498 0.82585 1.05252 1.02436 1.86645 1.32467 1.27820 1.85567 0.95490 0.90187 0.82553 0.77634 1.19777 0.96431 0.97888 0.92364 0.91760 0.91090 0.90489 0.89146 0.88335 0.88443 0.89963 0.91155 0.92228 0.91456 0.91423 0.91636 0.92256 0.91699 0.91771 0.91163 0.90778 0.88691 0.79894 0.85260 0.77344 1.16250 1.15438 0.82082 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 30. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 -0.25 10.31 59.85 0.62 0.37 16 2 N -1.00 0.87 3.18 -121.75 -0.39 0.49 16 3 C 0.12 -0.20 5.50 -4.04 -0.02 -0.22 16 4 C -0.13 0.30 3.96 -89.80 -0.36 -0.06 16 5 H 0.10 -0.31 8.14 -51.93 -0.42 -0.74 16 6 C -0.18 0.17 5.50 -25.92 -0.14 0.02 16 7 C 0.06 -0.05 2.82 -25.91 -0.07 -0.13 16 8 H 0.09 -0.16 5.54 -51.93 -0.29 -0.45 16 9 O -0.36 -0.47 10.00 -35.23 -0.35 -0.82 16 10 C 0.11 -0.02 1.11 -90.62 -0.10 -0.12 16 11 C -0.18 0.19 7.16 37.16 0.27 0.46 16 12 C -0.18 0.22 8.38 37.16 0.31 0.53 16 13 C -0.14 0.02 8.84 37.16 0.33 0.35 16 14 C -0.13 0.21 7.47 -25.91 -0.19 0.02 16 15 S 2.70 5.41 5.71 -107.50 -0.61 4.80 16 16 O -0.95 -4.21 16.71 -57.17 -0.96 -5.17 16 17 O -0.95 -4.55 16.18 -57.17 -0.93 -5.47 16 18 C -0.69 -0.34 5.89 -41.21 -0.24 -0.59 16 19 C -0.08 0.07 10.70 29.04 0.31 0.38 16 20 S 0.15 -0.22 20.58 -107.50 -2.21 -2.43 16 21 C -0.24 0.12 5.41 -36.00 -0.19 -0.08 16 22 C -0.04 0.03 2.96 36.00 0.11 0.14 16 23 O -0.52 -0.31 12.86 -35.23 -0.45 -0.76 16 24 Si 0.64 -0.89 30.97 -169.99 -5.26 -6.16 16 25 C -0.04 -0.02 6.01 -41.20 -0.25 -0.27 16 26 H 0.06 -0.17 8.14 -51.93 -0.42 -0.59 16 27 H 0.07 -0.24 7.79 -51.93 -0.40 -0.65 16 28 H 0.08 -0.35 8.07 -51.93 -0.42 -0.77 16 29 H 0.09 -0.28 8.11 -51.93 -0.42 -0.70 16 30 H 0.10 -0.04 6.62 -51.93 -0.34 -0.38 16 31 H 0.10 0.06 6.92 -51.93 -0.36 -0.30 16 32 H 0.08 -0.11 5.02 -51.93 -0.26 -0.38 16 33 H 0.07 0.01 7.64 -51.93 -0.40 -0.39 16 34 H 0.06 -0.12 6.41 -51.93 -0.33 -0.45 16 35 H 0.07 -0.12 8.14 -51.93 -0.42 -0.54 16 36 H 0.07 -0.13 8.14 -51.93 -0.42 -0.55 16 37 H 0.06 -0.04 8.14 -51.93 -0.42 -0.46 16 38 H 0.06 -0.10 6.24 -51.93 -0.32 -0.43 16 39 H 0.06 0.04 8.14 -51.93 -0.42 -0.38 16 40 H 0.06 0.01 8.14 -51.93 -0.42 -0.41 16 41 H 0.07 -0.09 8.14 -51.93 -0.42 -0.51 16 42 H 0.07 -0.18 8.14 -51.93 -0.42 -0.60 16 43 H 0.09 -0.09 8.10 -51.93 -0.42 -0.51 16 44 H 0.18 -0.50 8.00 -52.49 -0.42 -0.92 16 45 H 0.13 -0.21 5.34 -51.93 -0.28 -0.49 16 46 H 0.38 -0.74 8.70 45.56 0.40 -0.34 16 47 H -0.24 -0.11 7.11 56.52 0.40 0.29 16 48 H -0.23 -0.28 7.11 56.52 0.40 0.12 16 49 H 0.16 0.17 5.88 -52.49 -0.31 -0.14 16 LS Contribution 400.09 15.07 6.03 6.03 Total: 0.00 -8.03 400.09 -12.35 -20.38 By element: Atomic # 1 Polarization: -4.09 SS G_CDS: -7.58 Total: -11.68 kcal Atomic # 6 Polarization: 0.44 SS G_CDS: 0.37 Total: 0.81 kcal Atomic # 7 Polarization: 0.87 SS G_CDS: -0.39 Total: 0.49 kcal Atomic # 8 Polarization: -9.54 SS G_CDS: -2.69 Total: -12.23 kcal Atomic # 14 Polarization: -0.89 SS G_CDS: -5.26 Total: -6.16 kcal Atomic # 16 Polarization: 5.19 SS G_CDS: -2.83 Total: 2.37 kcal Total LS contribution 6.03 Total: 6.03 kcal Total: -8.03 -12.35 -20.38 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_40_15093196_15065232.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -57.265 kcal (2) G-P(sol) polarization free energy of solvation -8.025 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.291 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.350 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -20.375 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.640 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.90 seconds