Wall clock time and date at job start Tue Mar 9 2021 13:01:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46509 * 1 3 3 C 1.46501 * 119.99737 * 2 1 4 4 C 1.53006 * 109.46697 * 85.00039 * 3 2 1 5 5 H 1.08991 * 112.85428 * 316.19408 * 4 3 2 6 6 C 1.53783 * 113.60938 * 87.50437 * 4 3 2 7 7 C 1.53784 * 87.08184 * 139.98101 * 6 4 3 8 8 H 1.08997 * 113.69263 * 89.12424 * 7 6 4 9 9 O 1.42899 * 113.61511 * 220.01880 * 7 6 4 10 10 C 1.42895 * 113.99963 * 247.49715 * 9 7 6 11 11 C 1.52997 * 109.47503 * 59.99687 * 10 9 7 12 12 C 1.53006 * 109.47000 * 299.99523 * 10 9 7 13 13 C 1.52999 * 109.47162 * 180.02562 * 10 9 7 14 14 C 1.53785 * 113.61113 * 184.99711 * 4 3 2 15 15 S 1.65591 * 120.00068 * 180.02562 * 2 1 3 16 16 O 1.42098 * 106.40443 * 23.54001 * 15 2 1 17 17 O 1.42098 * 106.40408 * 156.45850 * 15 2 1 18 18 C 1.76199 * 107.21958 * 270.00028 * 15 2 1 19 19 C 1.33385 * 122.54045 * 90.02527 * 18 15 2 20 20 S 1.75888 * 109.59228 * 180.02562 * 19 18 15 21 21 C 1.75880 * 90.97278 * 359.97438 * 20 19 18 22 22 C 1.50698 * 125.20350 * 180.02562 * 21 20 19 23 23 O 1.42902 * 109.46984 * 119.97699 * 22 21 20 24 24 Si 1.86294 * 109.47401 * 359.97438 * 22 21 20 25 25 C 1.33397 * 109.59294 * 359.73181 * 21 20 19 26 26 H 1.08999 * 109.47218 * 89.99906 * 1 2 3 27 27 H 1.09002 * 109.46397 * 209.99683 * 1 2 3 28 28 H 1.08993 * 109.47025 * 329.99445 * 1 2 3 29 29 H 1.08998 * 109.47299 * 325.00424 * 3 2 1 30 30 H 1.08995 * 109.46965 * 204.99987 * 3 2 1 31 31 H 1.08997 * 113.61910 * 25.43293 * 6 4 3 32 32 H 1.09001 * 113.61039 * 254.52597 * 6 4 3 33 33 H 1.09002 * 109.47153 * 60.00043 * 11 10 9 34 34 H 1.09001 * 109.46832 * 300.00234 * 11 10 9 35 35 H 1.09004 * 109.47261 * 180.02562 * 11 10 9 36 36 H 1.08993 * 109.46955 * 180.02562 * 12 10 9 37 37 H 1.09000 * 109.47050 * 300.00235 * 12 10 9 38 38 H 1.09001 * 109.47002 * 59.99969 * 12 10 9 39 39 H 1.09002 * 109.46716 * 299.99480 * 13 10 9 40 40 H 1.09000 * 109.47486 * 59.99398 * 13 10 9 41 41 H 1.09001 * 109.47362 * 180.02562 * 13 10 9 42 42 H 1.08997 * 113.61338 * 105.47361 * 14 4 3 43 43 H 1.08998 * 113.61731 * 334.56710 * 14 4 3 44 44 H 1.07995 * 125.20426 * 359.97438 * 19 18 15 45 45 H 1.09006 * 109.46871 * 239.97278 * 22 21 20 46 46 H 0.96698 * 114.00252 * 299.99862 * 23 22 21 47 47 H 1.48499 * 109.99976 * 58.67969 * 24 22 21 48 48 H 1.48499 * 110.00360 * 180.02562 * 24 22 21 49 49 H 1.07998 * 122.54277 * 180.23804 * 25 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1975 1.2688 0.0000 4 6 2.3436 1.7732 1.4371 5 1 1.4243 1.6777 2.0147 6 6 3.5865 1.2259 2.1586 7 6 3.7573 2.6299 2.7625 8 1 3.2258 2.7694 3.7039 9 8 5.1169 3.0655 2.8231 10 6 5.6292 3.1883 4.1514 11 6 5.5584 1.8305 4.8530 12 6 4.7935 4.2078 4.9281 13 6 7.0840 3.6588 4.0955 14 6 2.9935 3.1633 1.5389 15 16 2.2931 -1.4341 -0.0006 16 8 1.4115 -2.4062 -0.5455 17 8 3.5760 -1.1565 -0.5450 18 6 2.5539 -1.8865 1.6822 19 6 1.6865 -2.6334 2.3670 20 16 2.2811 -2.8758 4.0045 21 6 3.7170 -1.9216 3.6564 22 6 4.8257 -1.6318 4.6350 23 8 6.0569 -2.1497 4.1270 24 14 4.4392 -2.4396 6.2686 25 6 3.6775 -1.4990 2.3918 26 1 -0.3633 0.0000 -1.0276 27 1 -0.3632 -0.8901 0.5138 28 1 -0.3633 0.8899 0.5139 29 1 1.6501 2.0043 -0.5894 30 1 3.1858 1.1178 -0.4343 31 1 4.3929 0.9400 1.4834 32 1 3.3593 0.4575 2.8976 33 1 6.1538 1.1041 4.2997 34 1 4.5219 1.4957 4.8928 35 1 5.9488 1.9243 5.8664 36 1 5.1846 4.3018 5.9411 37 1 4.8440 5.1752 4.4283 38 1 3.7570 3.8731 4.9680 39 1 7.6796 2.9328 3.5420 40 1 7.1340 4.6263 3.5958 41 1 7.4749 3.7521 5.1087 42 1 2.2877 3.9588 1.7775 43 1 3.6379 3.4070 0.6942 44 1 0.7604 -3.0282 1.9761 45 1 4.9148 -0.5544 4.7745 46 1 6.0501 -3.1052 3.9782 47 1 4.2837 -3.9051 6.0863 48 1 5.5248 -2.1607 7.2427 49 1 4.4606 -0.8965 1.9559 There are 65 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 65 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_40_15093196_15065232.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 13:01:08 Heat of formation + Delta-G solvation = -76.855089 kcal Electronic energy + Delta-G solvation = -33343.806931 eV Core-core repulsion = 29107.071446 eV Total energy + Delta-G solvation = -4236.735485 eV No. of doubly occupied orbitals = 65 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 376.126 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -40.98131 -39.57907 -38.80444 -38.43052 -37.66472 -37.08038 -36.54091 -33.75842 -31.89193 -29.58858 -28.37588 -28.32186 -27.59405 -26.51915 -26.17200 -24.89254 -23.41517 -21.49936 -20.83702 -20.42310 -19.73247 -19.23342 -18.58063 -18.00499 -17.81258 -17.64284 -17.07391 -16.61750 -16.32310 -15.98188 -15.79423 -15.72080 -15.39830 -15.01891 -14.81942 -14.52855 -14.36825 -14.23460 -14.15323 -13.92681 -13.83846 -13.54497 -13.40394 -13.36281 -13.26744 -13.24512 -13.08838 -12.94419 -12.79635 -12.68927 -12.64174 -12.62165 -12.52552 -12.36931 -12.02126 -11.93079 -11.71032 -11.57538 -11.26268 -11.16227 -10.85674 -10.29508 -10.19740 -9.99408 -9.65989 -5.15888 -0.83290 -0.47262 0.35511 0.59549 0.93929 1.17753 1.46848 1.81769 1.95736 2.63309 2.81226 3.12287 3.27068 3.48994 3.59666 3.69487 3.80597 3.86203 3.93388 3.95042 3.99767 4.07097 4.11937 4.18352 4.24264 4.40567 4.43424 4.57774 4.62728 4.65983 4.66401 4.70351 4.80490 4.80757 4.87286 4.89046 4.91166 4.94028 4.94772 4.97549 4.99141 5.03886 5.06203 5.10048 5.17652 5.31042 5.36899 5.38246 5.49619 5.58888 6.33585 6.51783 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.081 3.919 2 N -0.989 5.989 3 C 0.121 3.879 4 C -0.120 4.120 5 H 0.119 0.881 6 C -0.177 4.177 7 C 0.060 3.940 8 H 0.105 0.895 9 O -0.383 6.383 10 C 0.101 3.899 11 C -0.181 4.181 12 C -0.175 4.175 13 C -0.141 4.141 14 C -0.126 4.126 15 S 2.708 3.292 16 O -0.983 6.983 17 O -0.985 6.985 18 C -0.693 4.693 19 C -0.083 4.083 20 S 0.193 5.807 21 C -0.239 4.239 22 C -0.044 4.044 23 O -0.538 6.538 24 Si 0.717 3.283 25 C -0.045 4.045 26 H 0.062 0.938 27 H 0.079 0.921 28 H 0.102 0.898 29 H 0.110 0.890 30 H 0.079 0.921 31 H 0.074 0.926 32 H 0.087 0.913 33 H 0.053 0.947 34 H 0.071 0.929 35 H 0.076 0.924 36 H 0.076 0.924 37 H 0.057 0.943 38 H 0.068 0.932 39 H 0.051 0.949 40 H 0.057 0.943 41 H 0.082 0.918 42 H 0.087 0.913 43 H 0.082 0.918 44 H 0.203 0.797 45 H 0.136 0.864 46 H 0.387 0.613 47 H -0.260 1.260 48 H -0.268 1.268 49 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.568 3.285 6.532 9.829 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 N -0.829 5.829 3 C -0.004 4.004 4 C -0.140 4.140 5 H 0.137 0.863 6 C -0.215 4.215 7 C 0.002 3.998 8 H 0.122 0.878 9 O -0.303 6.303 10 C 0.062 3.938 11 C -0.238 4.238 12 C -0.232 4.232 13 C -0.198 4.198 14 C -0.164 4.164 15 S 2.798 3.202 16 O -0.973 6.973 17 O -0.976 6.976 18 C -0.795 4.795 19 C -0.222 4.222 20 S 0.457 5.543 21 C -0.356 4.356 22 C -0.156 4.156 23 O -0.346 6.346 24 Si 0.618 3.382 25 C -0.074 4.074 26 H 0.081 0.919 27 H 0.097 0.903 28 H 0.121 0.879 29 H 0.128 0.872 30 H 0.098 0.902 31 H 0.092 0.908 32 H 0.106 0.894 33 H 0.072 0.928 34 H 0.090 0.910 35 H 0.095 0.905 36 H 0.095 0.905 37 H 0.076 0.924 38 H 0.087 0.913 39 H 0.070 0.930 40 H 0.076 0.924 41 H 0.101 0.899 42 H 0.106 0.894 43 H 0.100 0.900 44 H 0.220 0.780 45 H 0.153 0.847 46 H 0.237 0.763 47 H -0.185 1.185 48 H -0.194 1.194 49 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges -6.312 2.135 7.559 10.077 hybrid contribution 1.397 -0.083 -1.305 1.913 sum -4.915 2.052 6.254 8.215 Atomic orbital electron populations 1.21809 0.76224 1.04994 1.03347 1.57187 1.16156 1.20245 1.89278 1.21597 0.97352 0.84525 0.96907 1.22801 0.98421 0.96296 0.96519 0.86335 1.24264 0.98038 0.98249 1.00910 1.23739 0.82902 0.94265 0.98876 0.87787 1.88038 1.27451 1.87424 1.27419 1.21606 0.94542 0.94891 0.82782 1.22571 1.02901 0.96800 1.01505 1.22433 1.00585 0.99108 1.01075 1.21801 0.93729 1.01391 1.02917 1.23198 0.98459 0.96681 0.98077 1.01302 0.72396 0.72675 0.73784 1.93552 1.66569 1.60058 1.77100 1.93539 1.41870 1.84832 1.77333 1.29785 1.04929 1.17257 1.27496 1.26195 1.02373 0.96218 0.97386 1.84252 1.13091 1.47367 1.09602 1.24993 1.02609 1.08210 0.99816 1.24746 0.82092 1.05923 1.02805 1.86620 1.33365 1.28801 1.85832 0.94713 0.88349 0.80234 0.74927 1.19696 0.96391 0.98446 0.92881 0.91938 0.90264 0.87900 0.87208 0.90249 0.90787 0.89443 0.92764 0.91032 0.90461 0.90517 0.92378 0.91313 0.93017 0.92352 0.89877 0.89396 0.89964 0.78033 0.84694 0.76324 1.18526 1.19351 0.83395 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 -0.53 10.31 127.77 1.32 0.79 16 2 N -0.99 1.58 3.18 -539.11 -1.72 -0.14 16 3 C 0.12 -0.33 5.50 86.38 0.47 0.14 16 4 C -0.12 0.59 3.96 -10.26 -0.04 0.55 16 5 H 0.12 -1.01 8.14 -2.39 -0.02 -1.03 16 6 C -0.18 0.19 5.50 31.12 0.17 0.36 16 7 C 0.06 -0.09 2.82 31.12 0.09 0.00 16 8 H 0.10 -0.50 5.54 -2.39 -0.01 -0.51 16 9 O -0.38 -1.43 10.00 -148.98 -1.49 -2.92 16 10 C 0.10 0.01 1.11 -10.79 -0.01 0.00 16 11 C -0.18 0.35 7.16 71.98 0.52 0.86 16 12 C -0.17 0.52 8.38 71.98 0.60 1.12 16 13 C -0.14 -0.12 8.84 71.98 0.64 0.52 16 14 C -0.13 0.44 7.47 31.12 0.23 0.67 16 15 S 2.71 14.25 5.71 -56.49 -0.32 13.93 16 16 O -0.98 -9.69 16.71 -128.00 -2.14 -11.83 16 17 O -0.99 -12.05 16.18 -128.00 -2.07 -14.13 16 18 C -0.69 -0.96 5.89 21.22 0.12 -0.83 16 19 C -0.08 0.21 10.70 66.72 0.71 0.92 16 20 S 0.19 -0.80 20.58 -56.49 -1.16 -1.96 16 21 C -0.24 0.26 5.41 24.59 0.13 0.39 16 22 C -0.04 0.07 2.96 71.24 0.21 0.28 16 23 O -0.54 -1.13 12.86 -148.98 -1.92 -3.05 16 24 Si 0.72 -2.30 30.97 68.60 2.12 -0.18 16 25 C -0.05 -0.09 6.01 21.22 0.13 0.04 16 26 H 0.06 -0.37 8.14 -2.39 -0.02 -0.39 16 27 H 0.08 -0.63 7.79 -2.39 -0.02 -0.65 16 28 H 0.10 -1.19 8.07 -2.39 -0.02 -1.21 16 29 H 0.11 -0.73 8.11 -2.39 -0.02 -0.75 16 30 H 0.08 0.11 6.62 -2.39 -0.02 0.10 16 31 H 0.07 0.29 6.92 -2.39 -0.02 0.27 16 32 H 0.09 -0.22 5.02 -2.39 -0.01 -0.23 16 33 H 0.05 0.09 7.64 -2.39 -0.02 0.07 16 34 H 0.07 -0.33 6.41 -2.39 -0.02 -0.34 16 35 H 0.08 -0.31 8.14 -2.38 -0.02 -0.33 16 36 H 0.08 -0.36 8.14 -2.39 -0.02 -0.38 16 37 H 0.06 -0.07 8.14 -2.39 -0.02 -0.09 16 38 H 0.07 -0.34 6.24 -2.39 -0.01 -0.35 16 39 H 0.05 0.17 8.14 -2.39 -0.02 0.15 16 40 H 0.06 0.10 8.14 -2.39 -0.02 0.08 16 41 H 0.08 -0.19 8.14 -2.39 -0.02 -0.20 16 42 H 0.09 -0.54 8.14 -2.39 -0.02 -0.56 16 43 H 0.08 -0.07 8.10 -2.39 -0.02 -0.08 16 44 H 0.20 -1.38 8.00 -2.91 -0.02 -1.40 16 45 H 0.14 -0.42 5.34 -2.38 -0.01 -0.43 16 46 H 0.39 -1.19 8.70 -74.06 -0.64 -1.83 16 47 H -0.26 -0.08 7.11 99.48 0.71 0.63 16 48 H -0.27 -0.78 7.11 99.48 0.71 -0.07 16 49 H 0.15 0.66 5.88 -2.91 -0.02 0.64 16 Total: 0.00 -20.33 400.09 -3.04 -23.37 By element: Atomic # 1 Polarization: -9.28 SS G_CDS: 0.36 Total: -8.92 kcal Atomic # 6 Polarization: 0.52 SS G_CDS: 5.30 Total: 5.81 kcal Atomic # 7 Polarization: 1.58 SS G_CDS: -1.72 Total: -0.14 kcal Atomic # 8 Polarization: -24.30 SS G_CDS: -7.61 Total: -31.92 kcal Atomic # 14 Polarization: -2.30 SS G_CDS: 2.12 Total: -0.18 kcal Atomic # 16 Polarization: 13.46 SS G_CDS: -1.49 Total: 11.97 kcal Total: -20.33 -3.04 -23.37 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_40_15093196_15065232.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -53.489 kcal (2) G-P(sol) polarization free energy of solvation -20.329 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.818 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.037 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -23.366 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.855 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds