Wall clock time and date at job start Tue Mar 9 2021 13:01:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45200 * 1 3 3 C 1.34228 * 116.99876 * 2 1 4 4 O 1.20828 * 119.99866 * 359.97438 * 3 2 1 5 5 C 1.50696 * 120.00362 * 179.97438 * 3 2 1 6 6 H 1.09002 * 112.90946 * 311.24949 * 5 3 2 7 7 C 1.53782 * 113.61559 * 82.50317 * 5 3 2 8 8 C 1.53783 * 87.08357 * 139.98506 * 7 5 3 9 9 H 1.09000 * 113.69004 * 89.12361 * 8 7 5 10 10 S 1.81395 * 113.61176 * 220.01902 * 8 7 5 11 11 O 1.42097 * 110.54181 * 161.99158 * 10 8 7 12 12 O 1.42101 * 110.54697 * 25.23786 * 10 8 7 13 13 O 1.52202 * 104.45083 * 273.61357 * 10 8 7 14 14 C 1.35898 * 113.99692 * 75.67096 * 13 10 8 15 15 C 1.38768 * 120.01993 * 91.90662 * 14 13 10 16 16 C 1.50708 * 119.95255 * 359.97438 * 15 14 13 17 17 O 1.42896 * 109.47037 * 75.28516 * 16 15 14 18 18 Si 1.86295 * 109.47085 * 195.28889 * 16 15 14 19 19 C 1.38216 * 120.09618 * 179.97438 * 15 14 13 20 20 C 1.38115 * 120.12841 * 359.74567 * 19 15 14 21 21 C 1.38983 * 120.03106 * 0.50376 * 20 19 15 22 22 N 1.39665 * 120.04248 * 179.77171 * 21 20 19 23 23 C 1.46502 * 120.00450 * 5.70585 * 22 21 20 24 24 C 1.46504 * 119.99536 * 185.70334 * 22 21 20 25 25 C 1.53004 * 109.47049 * 236.52577 * 24 22 21 26 26 C 1.52997 * 109.46847 * 116.53238 * 24 22 21 27 27 C 1.38616 * 120.01847 * 271.87959 * 14 13 10 28 28 C 1.53783 * 113.61789 * 179.97438 * 5 3 2 29 29 H 1.09002 * 109.46971 * 179.97438 * 1 2 3 30 30 H 1.08994 * 109.47538 * 300.00394 * 1 2 3 31 31 H 1.08999 * 109.46847 * 60.00308 * 1 2 3 32 32 H 1.08998 * 113.61529 * 25.43208 * 7 5 3 33 33 H 1.09000 * 113.60964 * 254.53056 * 7 5 3 34 34 H 1.08997 * 109.47248 * 315.28935 * 16 15 14 35 35 H 0.96709 * 113.99761 * 65.11072 * 17 16 15 36 36 H 1.48502 * 110.00128 * 180.02562 * 18 16 15 37 37 H 1.48503 * 110.00114 * 301.31597 * 18 16 15 38 38 H 1.08002 * 119.93627 * 180.02562 * 19 15 14 39 39 H 1.07994 * 119.98808 * 180.26059 * 20 19 15 40 40 H 1.08997 * 109.46908 * 270.00045 * 23 22 21 41 41 H 1.09002 * 109.46533 * 29.99470 * 23 22 21 42 42 H 1.08995 * 109.47375 * 149.99936 * 23 22 21 43 43 H 1.08990 * 109.47319 * 356.52907 * 24 22 21 44 44 H 1.09005 * 109.46806 * 60.00500 * 25 24 22 45 45 H 1.08997 * 109.46672 * 179.97438 * 25 24 22 46 46 H 1.08991 * 109.47057 * 300.00793 * 25 24 22 47 47 H 1.08999 * 109.47578 * 59.99748 * 26 24 22 48 48 H 1.09005 * 109.47264 * 179.97438 * 26 24 22 49 49 H 1.09000 * 109.47330 * 299.99592 * 26 24 22 50 50 H 1.08007 * 120.06368 * 0.02562 * 27 14 13 51 51 H 1.08995 * 113.61545 * 105.47011 * 28 5 3 52 52 H 1.09002 * 113.68699 * 334.57895 * 28 5 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4032 2.2093 -0.0005 5 6 3.5662 1.2750 0.0006 6 1 4.0244 0.6363 0.7558 7 6 4.1916 1.1234 -1.3961 8 6 5.1814 2.2268 -0.9865 9 1 6.0816 1.8496 -0.5012 10 16 5.5398 3.4105 -2.3135 11 8 6.1042 4.6009 -1.7808 12 8 4.4642 3.4609 -3.2408 13 8 6.6792 2.7718 -3.0947 14 6 6.2922 1.7453 -3.8968 15 6 5.9482 1.9889 -5.2189 16 6 6.0035 3.3927 -5.7644 17 8 7.3653 3.7631 -5.9889 18 14 5.0653 3.4716 -7.3719 19 6 5.5548 0.9460 -6.0361 20 6 5.5078 -0.3427 -5.5414 21 6 5.8462 -0.5920 -4.2167 22 7 5.7941 -1.8943 -3.7149 23 6 5.5046 -3.0146 -4.6135 24 6 6.0291 -2.1401 -2.2899 25 6 7.1794 -3.1357 -2.1269 26 6 4.7617 -2.7171 -1.6562 27 6 6.2413 0.4542 -3.3948 28 6 4.1076 2.7144 -0.0001 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3634 0.5139 0.8899 31 1 -0.3633 0.5138 -0.8900 32 1 3.5243 1.4145 -2.2073 33 1 4.6621 0.1541 -1.5609 34 1 5.5538 4.0793 -5.0472 35 1 7.8063 3.2434 -6.6750 36 1 5.1129 4.8508 -7.9206 37 1 5.6490 2.5168 -8.3482 38 1 5.2880 1.1384 -7.0648 39 1 5.2041 -1.1565 -6.1832 40 1 4.4281 -3.1810 -4.6514 41 1 5.8719 -2.7827 -5.6132 42 1 5.9984 -3.9135 -4.2443 43 1 6.2873 -1.2028 -1.7972 44 1 8.0824 -2.7246 -2.5784 45 1 7.3544 -3.3182 -1.0667 46 1 6.9212 -4.0730 -2.6196 47 1 4.5034 -3.6545 -2.1488 48 1 4.9366 -2.9004 -0.5960 49 1 3.9421 -2.0079 -1.7722 50 1 6.5087 0.2628 -2.3660 51 1 4.5103 3.0299 0.9623 52 1 3.4182 3.4414 -0.4294 There are 72 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 72 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_40_15096558_13206342.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 13:01:21 Heat of formation + Delta-G solvation = -134.622458 kcal Electronic energy + Delta-G solvation = -39637.696779 eV Core-core repulsion = 34699.251161 eV Total energy + Delta-G solvation = -4938.445618 eV No. of doubly occupied orbitals = 72 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 400.153 amu Computer time = 1.26 seconds Orbital eigenvalues (eV) -42.43738 -41.92524 -40.23617 -39.58833 -38.64590 -38.40975 -37.44094 -37.42805 -37.19152 -33.65270 -32.25244 -30.74675 -29.88870 -28.14744 -27.93508 -27.71003 -27.15459 -25.75934 -24.57350 -23.38970 -23.14190 -21.65562 -20.95826 -20.54638 -19.85928 -19.25961 -18.97689 -18.44811 -18.16742 -17.94612 -17.57400 -17.49249 -16.80915 -16.69721 -16.49868 -16.07584 -15.98752 -15.63721 -15.56917 -15.26850 -14.83152 -14.74921 -14.59617 -14.50654 -14.24544 -14.07698 -13.94826 -13.82640 -13.76234 -13.61363 -13.49410 -13.38960 -13.33683 -13.25215 -13.11079 -13.01628 -13.00602 -12.77863 -12.74902 -12.26489 -12.14526 -12.09398 -11.88376 -11.83553 -11.66610 -11.63806 -11.58923 -11.33723 -10.83706 -10.64049 -10.03511 -8.32650 -4.94879 -1.18067 0.06588 0.27895 0.93585 1.03641 1.23750 1.48157 1.67513 1.88999 2.05421 2.31756 2.47855 2.55407 2.88534 3.12582 3.17234 3.39256 3.53547 3.62501 3.64378 3.73996 3.90158 3.93696 4.05419 4.16943 4.21203 4.23179 4.25985 4.29077 4.30942 4.33051 4.37805 4.42175 4.47757 4.54453 4.56419 4.65979 4.72219 4.74803 4.78792 4.82029 4.89943 4.95208 4.98256 5.00342 5.05457 5.08331 5.18814 5.27593 5.31807 5.36092 5.46016 5.63224 6.27110 6.41394 6.49581 6.62095 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.354 6.354 3 C 0.465 3.535 4 O -0.538 6.538 5 C -0.085 4.085 6 H 0.176 0.824 7 C -0.094 4.094 8 C -0.623 4.623 9 H 0.204 0.796 10 S 2.582 3.418 11 O -0.975 6.975 12 O -0.960 6.960 13 O -0.666 6.666 14 C 0.116 3.884 15 C -0.166 4.166 16 C -0.112 4.112 17 O -0.550 6.550 18 Si 0.775 3.225 19 C -0.058 4.058 20 C -0.169 4.169 21 C 0.243 3.757 22 N -0.615 5.615 23 C 0.080 3.920 24 C 0.129 3.871 25 C -0.165 4.165 26 C -0.164 4.164 27 C -0.216 4.216 28 C -0.101 4.101 29 H 0.131 0.869 30 H 0.060 0.940 31 H 0.059 0.941 32 H 0.100 0.900 33 H 0.129 0.871 34 H 0.091 0.909 35 H 0.386 0.614 36 H -0.302 1.302 37 H -0.238 1.238 38 H 0.158 0.842 39 H 0.163 0.837 40 H 0.061 0.939 41 H 0.077 0.923 42 H 0.080 0.920 43 H 0.096 0.904 44 H 0.049 0.951 45 H 0.078 0.922 46 H 0.064 0.936 47 H 0.060 0.940 48 H 0.079 0.921 49 H 0.061 0.939 50 H 0.162 0.838 51 H 0.127 0.873 52 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.029 -14.808 1.021 14.981 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.270 6.270 3 C 0.309 3.691 4 O -0.428 6.428 5 C -0.104 4.104 6 H 0.194 0.806 7 C -0.132 4.132 8 C -0.734 4.734 9 H 0.221 0.779 10 S 2.683 3.317 11 O -0.973 6.973 12 O -0.959 6.959 13 O -0.625 6.625 14 C 0.074 3.926 15 C -0.171 4.171 16 C -0.219 4.219 17 O -0.358 6.358 18 Si 0.676 3.324 19 C -0.076 4.076 20 C -0.192 4.192 21 C 0.138 3.862 22 N -0.324 5.324 23 C -0.062 4.062 24 C 0.026 3.974 25 C -0.223 4.223 26 C -0.222 4.222 27 C -0.241 4.241 28 C -0.140 4.140 29 H 0.150 0.850 30 H 0.079 0.921 31 H 0.078 0.922 32 H 0.118 0.882 33 H 0.147 0.853 34 H 0.109 0.891 35 H 0.235 0.765 36 H -0.230 1.230 37 H -0.163 1.163 38 H 0.175 0.825 39 H 0.180 0.820 40 H 0.079 0.921 41 H 0.095 0.905 42 H 0.098 0.902 43 H 0.114 0.886 44 H 0.069 0.931 45 H 0.096 0.904 46 H 0.083 0.917 47 H 0.079 0.921 48 H 0.098 0.902 49 H 0.080 0.920 50 H 0.179 0.821 51 H 0.145 0.855 52 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -2.163 -13.464 0.340 13.641 hybrid contribution 1.074 0.469 0.630 1.331 sum -1.089 -12.994 0.971 13.076 Atomic orbital electron populations 1.23548 0.75072 1.05718 1.02404 1.86496 1.24618 1.32477 1.83361 1.24042 0.92575 0.81282 0.71201 1.90706 1.67909 1.37688 1.46492 1.22598 0.86005 0.99845 1.01998 0.80647 1.22957 0.95134 0.99022 0.96045 1.32124 1.09767 1.14744 1.16740 0.77857 1.05779 0.72988 0.76189 0.76742 1.93586 1.77058 1.45441 1.81210 1.93602 1.57292 1.86676 1.58301 1.85686 1.59459 1.54405 1.62979 1.17767 1.01505 0.84047 0.89264 1.20137 1.06327 0.96956 0.93668 1.25466 0.88556 0.94612 1.13249 1.86628 1.24341 1.63272 1.61567 0.93642 0.88535 0.78423 0.71820 1.21006 0.95457 0.91185 0.99964 1.21141 1.05817 0.97646 0.94580 1.17542 0.91747 0.84854 0.92087 1.46800 1.74767 1.02554 1.08275 1.21867 1.01450 0.88743 0.94092 1.21333 0.95897 1.00076 0.80080 1.22186 0.97497 0.99456 1.03131 1.22220 0.96773 1.01658 1.01598 1.20895 1.10547 0.89542 1.03109 1.22756 0.93897 0.96411 1.00935 0.85040 0.92119 0.92228 0.88191 0.85290 0.89125 0.76490 1.23038 1.16297 0.82524 0.81954 0.92062 0.90459 0.90150 0.88612 0.93145 0.90358 0.91705 0.92140 0.90215 0.92009 0.82060 0.85488 0.89481 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 -0.08 10.56 113.37 1.20 1.11 16 2 O -0.35 0.27 10.57 -51.40 -0.54 -0.28 16 3 C 0.46 0.81 7.48 71.23 0.53 1.34 16 4 O -0.54 -5.19 15.65 21.96 0.34 -4.84 16 5 C -0.08 0.47 4.26 -11.01 -0.05 0.42 16 6 H 0.18 -2.34 8.14 -2.39 -0.02 -2.35 16 7 C -0.09 0.52 5.53 31.12 0.17 0.69 16 8 C -0.62 2.16 3.61 31.11 0.11 2.27 16 9 H 0.20 -2.37 8.14 -2.39 -0.02 -2.39 16 10 S 2.58 22.25 4.94 -56.49 -0.28 21.97 16 11 O -0.97 -17.03 18.09 -118.57 -2.15 -19.18 16 12 O -0.96 -11.05 13.61 -118.57 -1.61 -12.66 16 13 O -0.67 -6.00 9.44 -61.49 -0.58 -6.58 16 14 C 0.12 0.58 4.67 22.49 0.11 0.69 16 15 C -0.17 -0.84 4.73 -19.74 -0.09 -0.93 16 16 C -0.11 -0.99 2.27 71.24 0.16 -0.83 16 17 O -0.55 -5.91 12.93 -148.98 -1.93 -7.84 16 18 Si 0.77 2.01 30.17 68.60 2.07 4.08 16 19 C -0.06 0.09 8.65 22.24 0.19 0.28 16 20 C -0.17 0.82 9.16 22.42 0.21 1.02 16 21 C 0.24 -1.07 6.53 38.20 0.25 -0.82 16 22 N -0.62 5.09 2.90 -698.14 -2.02 3.07 16 23 C 0.08 -0.89 9.25 127.77 1.18 0.29 16 24 C 0.13 -1.32 2.90 44.99 0.13 -1.19 16 25 C -0.16 1.63 9.10 71.98 0.66 2.29 16 26 C -0.16 1.86 9.15 71.98 0.66 2.52 16 27 C -0.22 0.44 6.30 22.49 0.14 0.58 16 28 C -0.10 0.22 6.99 31.11 0.22 0.44 16 29 H 0.13 -1.21 8.14 -2.39 -0.02 -1.23 16 30 H 0.06 -0.13 8.13 -2.39 -0.02 -0.15 16 31 H 0.06 -0.11 8.13 -2.39 -0.02 -0.13 16 32 H 0.10 -0.18 7.32 -2.39 -0.02 -0.19 16 33 H 0.13 -1.42 4.82 -2.39 -0.01 -1.44 16 34 H 0.09 1.23 5.68 -2.39 -0.01 1.22 16 35 H 0.39 0.79 8.61 -74.05 -0.64 0.16 16 36 H -0.30 -3.15 7.11 99.48 0.71 -2.44 16 37 H -0.24 0.03 6.67 99.48 0.66 0.70 16 38 H 0.16 -0.87 4.85 -2.91 -0.01 -0.88 16 39 H 0.16 -1.65 6.30 -2.91 -0.02 -1.67 16 40 H 0.06 -0.72 8.14 -2.39 -0.02 -0.74 16 41 H 0.08 -0.92 6.45 -2.39 -0.02 -0.94 16 42 H 0.08 -0.97 6.25 -2.39 -0.01 -0.98 16 43 H 0.10 -1.14 4.56 -2.39 -0.01 -1.15 16 44 H 0.05 -0.36 8.14 -2.38 -0.02 -0.38 16 45 H 0.08 -0.87 8.14 -2.39 -0.02 -0.89 16 46 H 0.06 -0.65 6.56 -2.39 -0.02 -0.67 16 47 H 0.06 -0.63 7.76 -2.39 -0.02 -0.65 16 48 H 0.08 -1.02 8.14 -2.38 -0.02 -1.04 16 49 H 0.06 -0.62 7.73 -2.39 -0.02 -0.64 16 50 H 0.16 -1.24 4.58 -2.91 -0.01 -1.25 16 51 H 0.13 -0.83 8.14 -2.39 -0.02 -0.85 16 52 H 0.09 0.24 7.40 -2.39 -0.02 0.22 16 Total: 0.00 -32.26 413.47 -0.58 -32.84 By element: Atomic # 1 Polarization: -21.10 SS G_CDS: 0.34 Total: -20.77 kcal Atomic # 6 Polarization: 4.41 SS G_CDS: 5.77 Total: 10.18 kcal Atomic # 7 Polarization: 5.09 SS G_CDS: -2.02 Total: 3.07 kcal Atomic # 8 Polarization: -44.91 SS G_CDS: -6.47 Total: -51.38 kcal Atomic # 14 Polarization: 2.01 SS G_CDS: 2.07 Total: 4.08 kcal Atomic # 16 Polarization: 22.25 SS G_CDS: -0.28 Total: 21.97 kcal Total: -32.26 -0.58 -32.84 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_40_15096558_13206342.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -101.783 kcal (2) G-P(sol) polarization free energy of solvation -32.255 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -134.038 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.584 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -32.840 kcal (6) G-S(sol) free energy of system = (1) + (5) -134.622 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.26 seconds