Wall clock time and date at job start Tue Mar 9 2021 13:10:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53004 * 109.47436 * 2 1 4 4 N 1.46503 * 109.47037 * 120.00094 * 2 1 3 5 5 C 1.46496 * 119.99915 * 295.35315 * 4 2 1 6 6 C 1.39669 * 120.00313 * 115.35301 * 4 2 1 7 7 C 1.38936 * 120.04354 * 6.08437 * 6 4 2 8 8 C 1.38151 * 120.03591 * 179.97438 * 7 6 4 9 9 C 1.38182 * 120.12630 * 0.02562 * 8 7 6 10 10 C 1.50708 * 119.95024 * 180.02562 * 9 8 7 11 11 O 1.42902 * 109.46777 * 254.99912 * 10 9 8 12 12 Si 1.86298 * 109.47073 * 14.99803 * 10 9 8 13 13 H 1.48500 * 109.46967 * 60.00382 * 12 10 9 14 14 H 1.48499 * 109.46673 * 180.02562 * 12 10 9 15 15 H 1.48498 * 109.47366 * 299.99875 * 12 10 9 16 16 C 1.38810 * 120.09132 * 359.97438 * 9 8 7 17 17 O 1.35897 * 120.01403 * 180.02562 * 16 9 8 18 18 S 1.52198 * 114.00179 * 90.00009 * 17 16 9 19 19 O 1.42099 * 106.40264 * 188.53803 * 18 17 16 20 20 O 1.42103 * 106.40283 * 321.46186 * 18 17 16 21 21 C 1.76203 * 107.21595 * 74.99863 * 18 17 16 22 22 C 1.38233 * 120.00112 * 270.27267 * 21 18 17 23 23 C 1.38230 * 120.00161 * 180.02562 * 22 21 18 24 24 C 1.38241 * 120.00191 * 359.97438 * 23 22 21 25 Xx 1.80994 * 120.00226 * 179.97438 * 24 23 22 26 25 F 8.56024 * 110.51022 * 69.16759 * 2 1 3 27 26 F 1.60996 * 90.00058 * 135.00283 * 25 24 23 28 27 F 1.60999 * 90.00256 * 315.00403 * 25 24 23 29 28 F 1.61000 * 90.00381 * 225.00332 * 25 24 23 30 29 F 1.61003 * 89.99934 * 45.00218 * 25 24 23 31 30 C 1.38236 * 119.99707 * 359.95942 * 24 23 22 32 31 C 1.38238 * 119.99963 * 90.00376 * 21 18 17 33 32 C 1.38573 * 119.96609 * 359.74847 * 16 9 8 34 33 H 1.09001 * 109.46666 * 179.97438 * 1 2 3 35 34 H 1.08996 * 109.47262 * 300.00157 * 1 2 3 36 35 H 1.08995 * 109.47097 * 60.00225 * 1 2 3 37 36 H 1.08996 * 109.47262 * 239.99843 * 2 1 3 38 37 H 1.09004 * 109.46861 * 59.99975 * 3 2 1 39 38 H 1.08991 * 109.47384 * 179.97438 * 3 2 1 40 39 H 1.08999 * 109.46538 * 300.00410 * 3 2 1 41 40 H 1.08994 * 109.47739 * 90.00291 * 5 4 2 42 41 H 1.09000 * 109.47180 * 210.00461 * 5 4 2 43 42 H 1.09004 * 109.47312 * 329.99608 * 5 4 2 44 43 H 1.08003 * 119.98145 * 359.96119 * 7 6 4 45 44 H 1.07995 * 119.93775 * 180.02562 * 8 7 6 46 45 H 1.09004 * 109.46879 * 135.00278 * 10 9 8 47 46 H 0.96697 * 114.00187 * 59.99632 * 11 10 9 48 47 H 1.08001 * 120.00129 * 359.97438 * 22 21 18 49 48 H 1.08004 * 119.99917 * 179.97438 * 23 22 21 50 49 H 1.07999 * 119.99674 * 180.02562 * 31 24 23 51 50 H 1.08005 * 120.00128 * 0.19993 * 32 21 18 52 51 H 1.07996 * 120.06229 * 180.02562 * 33 16 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 7 2.0183 -0.6906 1.1962 5 6 1.7503 -0.1336 2.5243 6 6 2.7394 -1.8802 1.0704 7 6 3.1034 -2.3432 -0.1880 8 6 3.8171 -3.5195 -0.3122 9 6 4.1703 -4.2386 0.8137 10 6 4.9494 -5.5211 0.6736 11 8 4.0806 -6.6331 0.8986 12 14 5.6644 -5.6290 -1.0433 13 1 6.5672 -4.4733 -1.2770 14 1 6.4315 -6.8929 -1.1814 15 1 4.5639 -5.6070 -2.0401 16 6 3.8094 -3.7809 2.0735 17 8 4.1580 -4.4891 3.1797 18 16 5.5073 -4.0980 3.7654 19 8 5.8002 -5.0562 4.7731 20 8 6.3654 -3.8438 2.6616 21 6 5.2902 -2.5571 4.5919 22 6 5.4702 -1.3721 3.9034 23 6 5.3004 -0.1632 4.5520 24 6 4.9501 -0.1394 5.8891 25 9 4.5293 2.8513 7.4934 26 9 3.3746 0.8920 7.4129 27 9 6.0823 1.9950 6.0640 28 9 5.5771 0.8907 7.9900 29 9 3.8798 1.9962 5.4869 30 6 4.7687 -1.3244 6.5772 31 6 4.9344 -2.5333 5.9275 32 6 3.0985 -2.5985 2.2028 33 1 -0.3633 -1.0277 -0.0005 34 1 -0.3633 0.5138 0.8899 35 1 -0.3633 0.5138 -0.8900 36 1 1.8933 -0.5138 -0.8899 37 1 1.6767 1.9563 0.8900 38 1 3.1300 1.4425 0.0005 39 1 1.6767 1.9563 -0.8900 40 1 0.8083 -0.5312 2.9019 41 1 2.5582 -0.4073 3.2029 42 1 1.6851 0.9524 2.4565 43 1 2.8280 -1.7833 -1.0695 44 1 4.0995 -3.8778 -1.2910 45 1 5.7571 -5.5372 1.4054 46 1 3.3369 -6.6822 0.2825 47 1 5.7443 -1.3906 2.8590 48 1 5.4415 0.7627 4.0141 49 1 4.4946 -1.3058 7.6217 50 1 4.7927 -3.4592 6.4652 51 1 2.8172 -2.2407 3.1822 RHF calculation, no. of doubly occupied orbitals= 82 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. SCF OSCILLATION -- NSTAR INDEX INCREASED BY ONE CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_40_15096558_8643202.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 13:10:54 Heat of formation + Delta-G solvation = 324.755140 kcal Electronic energy + Delta-G solvation = -48095.627390 eV Core-core repulsion = 41453.540646 eV Total energy + Delta-G solvation = -6642.086743 eV No. of doubly occupied orbitals = 82 Molecular weight (most abundant/longest-lived isotopes) = 459.114 amu Computer time = 20.61 seconds Orbital eigenvalues (eV) -44.73145 -44.52194 -43.99482 -43.87324 -43.64187 -42.53581 -41.34789 -40.31917 -38.81898 -38.47910 -37.46655 -37.11100 -33.92344 -33.28405 -33.10445 -31.68183 -31.21689 -28.17224 -27.93007 -26.02892 -24.89003 -24.86635 -24.29505 -22.92613 -22.33825 -20.89589 -20.19499 -19.38608 -19.06085 -18.22571 -17.95857 -17.57312 -17.37970 -16.74280 -16.64224 -16.53115 -16.12244 -15.97657 -15.83597 -15.70574 -15.60799 -15.53723 -15.39613 -15.19271 -14.99825 -14.91335 -14.78800 -14.71901 -14.46081 -14.41565 -14.34697 -14.18336 -14.14873 -13.95351 -13.90874 -13.80974 -13.69416 -13.63532 -13.55146 -13.50934 -13.41324 -13.35834 -13.23694 -13.14872 -12.86518 -12.85111 -12.71787 -12.63173 -12.38198 -12.22976 -12.19318 -12.11966 -12.01976 -11.75687 -11.60913 -11.45509 -11.24691 -11.11338 -10.89662 -10.40209 -10.14267 -8.40877 -5.38281 -4.96907 -3.43377 -1.60355 -1.25913 -0.82270 0.01988 0.23272 0.89716 1.16937 1.34993 1.45942 1.60389 1.98652 1.99496 2.15203 2.34085 2.40725 2.54008 2.63826 3.14531 3.18190 3.49194 3.57739 3.63622 3.69735 3.71634 3.80088 3.85779 3.92547 4.00840 4.12519 4.13396 4.15464 4.18379 4.30185 4.35542 4.40986 4.54987 4.56052 4.59703 4.67351 4.73771 4.83460 4.88365 4.92372 4.97866 5.03525 5.08962 5.22221 5.32555 5.36329 5.55553 6.16873 6.35611 6.76153 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.136 3.864 3 C -0.165 4.165 4 N -0.615 5.615 5 C 0.077 3.923 6 C 0.241 3.759 7 C -0.164 4.164 8 C -0.059 4.059 9 C -0.161 4.161 10 C -0.104 4.104 11 O -0.552 6.552 12 Si 0.974 3.026 13 H -0.244 1.244 14 H -0.277 1.277 15 H -0.221 1.221 16 C 0.113 3.887 17 O -0.642 6.642 18 S 2.686 3.314 19 O -0.936 6.936 20 O -0.941 6.941 21 C -0.696 4.696 22 C 0.054 3.946 23 C -0.127 4.127 24 C 0.411 3.589 25 F -0.056 7.056 26 F -0.114 7.114 27 F -0.209 7.209 28 F -0.259 7.259 29 F -0.207 7.207 30 C -0.128 4.128 31 C 0.060 3.940 32 C -0.212 4.212 33 H 0.054 0.946 34 H 0.053 0.947 35 H 0.075 0.925 36 H 0.108 0.892 37 H 0.055 0.945 38 H 0.061 0.939 39 H 0.076 0.924 40 H 0.054 0.946 41 H 0.073 0.927 42 H 0.079 0.921 43 H 0.161 0.839 44 H 0.156 0.844 45 H 0.101 0.899 46 H 0.392 0.608 47 H 0.217 0.783 48 H 0.204 0.796 49 H 0.205 0.795 50 H 0.223 0.777 51 H 0.154 0.846 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.631 -2.804 -10.080 11.442 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C 0.034 3.966 3 C -0.223 4.223 4 N -0.324 5.324 5 C -0.066 4.066 6 C 0.136 3.864 7 C -0.187 4.187 8 C -0.077 4.077 9 C -0.166 4.166 10 C -0.213 4.213 11 O -0.359 6.359 12 Si 0.794 3.206 13 H -0.167 1.167 14 H -0.203 1.203 15 H -0.144 1.144 16 C 0.071 3.929 17 O -0.602 6.602 18 S 2.776 3.224 19 O -0.934 6.934 20 O -0.940 6.940 21 C -0.778 4.778 22 C 0.036 3.964 23 C -0.144 4.144 24 C 0.406 3.594 25 F -0.056 7.056 26 F -0.113 7.113 27 F -0.208 7.208 28 F -0.257 7.257 29 F -0.205 7.205 30 C -0.145 4.145 31 C 0.042 3.958 32 C -0.237 4.237 33 H 0.073 0.927 34 H 0.072 0.928 35 H 0.094 0.906 36 H 0.126 0.874 37 H 0.074 0.926 38 H 0.080 0.920 39 H 0.095 0.905 40 H 0.072 0.928 41 H 0.092 0.908 42 H 0.097 0.903 43 H 0.179 0.821 44 H 0.173 0.827 45 H 0.119 0.881 46 H 0.241 0.759 47 H 0.234 0.766 48 H 0.220 0.780 49 H 0.221 0.779 50 H 0.239 0.761 51 H 0.172 0.828 Dipole moment (debyes) X Y Z Total from point charges -3.793 -3.478 -10.495 11.689 hybrid contribution -0.794 2.062 1.888 2.907 sum -4.587 -1.416 -8.607 9.855 Atomic orbital electron populations 1.22179 0.95001 1.02195 1.02796 1.21283 0.94116 0.93406 0.87819 1.22188 1.01779 0.95379 1.02947 1.46789 1.56791 1.21955 1.06825 1.21829 1.01392 1.00065 0.83317 1.17572 0.89888 0.86120 0.92828 1.21189 1.02456 0.98106 0.96907 1.21001 0.95265 0.93636 0.97840 1.20227 1.04443 0.99607 0.92352 1.25244 0.96042 0.84417 1.15558 1.86532 1.42674 1.45455 1.61250 0.85372 0.80856 0.80702 0.73644 1.16675 1.20255 1.14353 1.17633 1.02417 0.91215 0.81640 1.85761 1.59234 1.67169 1.47996 1.02597 0.72938 0.72979 0.73866 1.93672 1.81561 1.58093 1.60055 1.93659 1.64833 1.85190 1.50269 1.31919 1.15391 1.22672 1.07785 1.21607 0.88755 0.84311 1.01693 1.22162 1.00482 1.02555 0.89232 1.27677 1.03288 0.46206 0.82277 1.99967 1.67913 1.66832 1.70867 1.99950 1.80239 1.88169 1.42973 1.99913 1.66953 1.81198 1.72713 1.99928 1.36197 1.95150 1.94451 1.99931 1.92589 1.85181 1.42826 1.22284 1.01820 0.84056 1.06383 1.21634 0.87675 0.95742 0.90738 1.20794 1.06677 0.95666 1.00543 0.92733 0.92815 0.90582 0.87420 0.92565 0.92002 0.90526 0.92765 0.90826 0.90279 0.82124 0.82720 0.88139 0.75863 0.76634 0.77970 0.77855 0.76105 0.82817 Number of geometries 1 Number of calculations of the screened coulomb radii 3 The total number of SCF iterations 257. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 1.48 9.26 71.98 0.67 2.15 16 2 C 0.14 -1.42 3.20 44.99 0.14 -1.27 16 3 C -0.16 1.64 9.08 71.98 0.65 2.30 16 4 N -0.62 5.71 2.90 -698.14 -2.02 3.69 16 5 C 0.08 -0.73 9.29 127.77 1.19 0.46 16 6 C 0.24 -1.98 6.53 38.20 0.25 -1.73 16 7 C -0.16 1.54 9.31 22.42 0.21 1.75 16 8 C -0.06 0.45 8.65 22.24 0.19 0.64 16 9 C -0.16 0.51 4.72 -19.74 -0.09 0.42 16 10 C -0.10 0.06 2.26 71.24 0.16 0.22 16 11 O -0.55 -0.08 12.88 -148.98 -1.92 -2.00 16 12 Si 0.97 -3.25 25.49 68.60 1.75 -1.50 16 13 H -0.24 0.71 7.11 99.48 0.71 1.42 16 14 H -0.28 -0.37 7.11 99.48 0.71 0.34 16 15 H -0.22 1.74 6.73 99.48 0.67 2.41 16 16 C 0.11 -0.39 4.78 22.49 0.11 -0.29 16 17 O -0.64 1.26 9.57 -61.67 -0.59 0.66 16 18 S 2.69 -7.10 5.07 -56.49 -0.29 -7.39 16 19 O -0.94 -2.91 17.27 -118.78 -2.05 -4.96 16 20 O -0.94 0.57 13.83 -118.78 -1.64 -1.07 16 21 C -0.70 6.45 5.27 22.27 0.12 6.56 16 22 C 0.05 -0.62 8.37 22.27 0.19 -0.44 16 23 C -0.13 1.07 8.62 22.27 0.19 1.26 16 24 C 0.41 -1.12 4.82 22.27 0.11 -1.01 16 25 F -0.06 -1.02 16.66 44.97 0.75 -0.27 16 26 F -0.11 -1.03 15.31 44.97 0.69 -0.34 16 27 F -0.21 -2.75 15.32 44.97 0.69 -2.06 16 28 F -0.26 -3.58 15.32 44.97 0.69 -2.89 16 29 F -0.21 -1.90 15.31 44.97 0.69 -1.21 16 30 C -0.13 1.04 8.62 22.27 0.19 1.23 16 31 C 0.06 -0.68 9.52 22.27 0.21 -0.47 16 32 C -0.21 1.58 7.44 22.49 0.17 1.75 16 33 H 0.05 -0.40 8.14 -2.39 -0.02 -0.42 16 34 H 0.05 -0.40 7.79 -2.39 -0.02 -0.42 16 35 H 0.08 -0.76 8.14 -2.39 -0.02 -0.78 16 36 H 0.11 -1.40 5.31 -2.39 -0.01 -1.41 16 37 H 0.06 -0.47 6.53 -2.38 -0.02 -0.48 16 38 H 0.06 -0.58 8.14 -2.39 -0.02 -0.60 16 39 H 0.08 -0.81 8.14 -2.39 -0.02 -0.83 16 40 H 0.05 -0.48 8.14 -2.39 -0.02 -0.50 16 41 H 0.07 -0.87 6.46 -2.39 -0.02 -0.89 16 42 H 0.08 -0.73 6.19 -2.38 -0.01 -0.74 16 43 H 0.16 -2.21 5.74 -2.91 -0.02 -2.23 16 44 H 0.16 -1.72 4.87 -2.91 -0.01 -1.73 16 45 H 0.10 0.16 5.59 -2.39 -0.01 0.15 16 46 H 0.39 -3.17 8.70 -74.06 -0.64 -3.82 16 47 H 0.22 -3.48 7.62 -2.91 -0.02 -3.51 16 48 H 0.20 -2.06 7.40 -2.91 -0.02 -2.08 16 49 H 0.20 -2.02 7.40 -2.91 -0.02 -2.04 16 50 H 0.22 -3.65 7.62 -2.91 -0.02 -3.67 16 51 H 0.15 -1.73 6.17 -2.91 -0.02 -1.75 16 Total: 0.00 -31.89 439.69 2.51 -29.38 By element: Atomic # 1 Polarization: -24.69 SS G_CDS: 1.12 Total: -23.58 kcal Atomic # 6 Polarization: 8.88 SS G_CDS: 4.65 Total: 13.53 kcal Atomic # 7 Polarization: 5.71 SS G_CDS: -2.02 Total: 3.69 kcal Atomic # 8 Polarization: -1.17 SS G_CDS: -6.20 Total: -7.37 kcal Atomic # 9 Polarization: -10.27 SS G_CDS: 3.50 Total: -6.76 kcal Atomic # 14 Polarization: -3.25 SS G_CDS: 1.75 Total: -1.50 kcal Atomic # 16 Polarization: -7.10 SS G_CDS: -0.29 Total: -7.39 kcal Total: -31.89 2.51 -29.38 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_40_15096558_8643202.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 354.137 kcal (2) G-P(sol) polarization free energy of solvation -31.888 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 322.249 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.506 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -29.382 kcal (6) G-S(sol) free energy of system = (1) + (5) 324.755 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 20.62 seconds