Wall clock time and date at job start Tue Mar 9 2021 13:12:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 O 1.45199 * 109.47207 * 2 1 4 4 C 1.34224 * 117.00321 * 179.97438 * 3 2 1 5 5 O 1.20822 * 120.00190 * 359.97438 * 4 3 2 6 6 C 1.50704 * 120.00312 * 179.97438 * 4 3 2 7 7 H 1.08999 * 109.47407 * 300.00465 * 6 4 3 8 8 C 1.53003 * 109.46865 * 60.00076 * 6 4 3 9 9 C 1.52995 * 109.47057 * 180.02562 * 8 6 4 10 10 C 1.53001 * 109.46910 * 299.99662 * 9 8 6 11 11 F 1.39898 * 109.47393 * 300.00247 * 10 9 8 12 12 C 1.53009 * 109.46987 * 179.97438 * 10 9 8 13 13 S 1.81403 * 109.46726 * 60.00300 * 12 10 9 14 14 O 1.42101 * 110.54087 * 61.99724 * 13 12 10 15 15 O 1.42093 * 110.54222 * 285.24204 * 13 12 10 16 16 O 1.52205 * 104.44577 * 173.61914 * 13 12 10 17 17 C 1.35977 * 113.99760 * 74.68941 * 16 13 12 18 18 C 1.38655 * 119.98555 * 95.54270 * 17 16 13 19 19 C 1.50697 * 120.00798 * 359.97438 * 18 17 16 20 20 O 1.42902 * 109.47327 * 234.38701 * 19 18 17 21 21 Si 1.86300 * 109.47239 * 114.38302 * 19 18 17 22 22 C 1.38531 * 119.98888 * 179.97438 * 18 17 16 23 23 C 1.39262 * 119.88070 * 359.97438 * 22 18 17 24 24 C 1.38525 * 119.92057 * 359.97438 * 23 22 18 25 25 C 1.38228 * 120.09936 * 0.02562 * 24 23 22 26 26 O 1.36814 * 108.68159 * 180.08956 * 23 22 18 27 27 C 1.43984 * 105.35865 * 17.08751 * 26 23 22 28 28 O 1.36505 * 131.47255 * 179.97438 * 22 18 17 29 29 C 1.53003 * 109.46985 * 60.00294 * 10 9 8 30 30 C 1.52995 * 109.47057 * 299.99616 * 29 10 9 31 31 H 1.08999 * 109.46903 * 180.02562 * 1 2 3 32 32 H 1.09001 * 109.47310 * 300.00453 * 1 2 3 33 33 H 1.09003 * 109.47315 * 60.00278 * 1 2 3 34 34 H 1.09001 * 109.47310 * 239.99547 * 2 1 3 35 35 H 1.09003 * 109.47315 * 119.99722 * 2 1 3 36 36 H 1.08997 * 109.47045 * 300.00157 * 8 6 4 37 37 H 1.08999 * 109.46790 * 60.00012 * 8 6 4 38 38 H 1.09006 * 109.47274 * 180.02562 * 9 8 6 39 39 H 1.08997 * 109.47386 * 59.99709 * 9 8 6 40 40 H 1.09003 * 109.46951 * 300.00631 * 12 10 9 41 41 H 1.08996 * 109.46897 * 179.97438 * 12 10 9 42 42 H 1.09008 * 109.46835 * 354.38871 * 19 18 17 43 43 H 0.96700 * 113.99846 * 59.99673 * 20 19 18 44 44 H 1.48502 * 109.99885 * 305.27881 * 21 19 18 45 45 H 1.48498 * 109.99792 * 66.59624 * 21 19 18 46 46 H 1.07998 * 119.95673 * 180.02562 * 24 23 22 47 47 H 1.07997 * 119.96175 * 179.97438 * 25 24 23 48 48 H 1.08999 * 110.56926 * 214.41363 * 27 26 23 49 49 H 1.09000 * 110.56996 * 91.69096 * 27 26 23 50 50 H 1.08999 * 109.46790 * 59.99759 * 29 10 9 51 51 H 1.08997 * 109.47045 * 179.97438 * 29 10 9 52 52 H 1.08998 * 109.47333 * 179.97438 * 30 29 10 53 53 H 1.08997 * 109.47386 * 300.00291 * 30 29 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0140 1.3689 0.0000 4 6 3.3447 1.5449 0.0005 5 8 4.0807 0.5867 0.0015 6 6 3.9207 2.9375 0.0000 7 1 3.5852 3.4692 -0.8904 8 6 3.4485 3.6851 1.2486 9 6 4.0328 5.0991 1.2478 10 6 5.5607 5.0196 1.2483 11 9 5.9918 4.3375 2.3912 12 6 6.1451 6.4337 1.2468 13 16 5.5852 7.3207 2.7269 14 8 6.0504 6.6722 3.9026 15 8 4.2241 7.7059 2.5923 16 8 6.3522 8.6350 2.6947 17 6 5.8936 9.5205 1.7703 18 6 4.9912 10.5053 2.1421 19 6 4.5183 10.5940 3.5702 20 8 3.0900 10.5652 3.6017 21 14 5.1243 12.1847 4.3274 22 6 4.5243 11.4078 1.2005 23 6 4.9634 11.3238 -0.1184 24 6 5.8658 10.3388 -0.4849 25 6 6.3304 9.4394 0.4563 26 8 4.3645 12.3174 -0.8438 27 6 3.8694 13.2551 0.1302 28 8 3.6497 12.4507 1.3037 29 6 6.0329 4.2719 -0.0003 30 6 5.4486 2.8579 0.0005 31 1 -0.3633 -1.0277 0.0005 32 1 -0.3634 0.5139 0.8899 33 1 -0.3634 0.5138 -0.8900 34 1 1.8934 -0.5139 -0.8899 35 1 1.8934 -0.5138 0.8900 36 1 2.3601 3.7421 1.2481 37 1 3.7841 3.1534 2.1390 38 1 3.6968 5.6317 2.1376 39 1 3.6970 5.6305 0.3574 40 1 5.8091 6.9647 0.3562 41 1 7.2335 6.3770 1.2477 42 1 4.9114 9.7494 4.1362 43 1 2.7043 9.7635 3.2227 44 1 6.5992 12.2848 4.1863 45 1 4.4711 13.3429 3.6664 46 1 6.2070 10.2734 -1.5074 47 1 7.0336 8.6721 0.1681 48 1 2.9348 13.7018 -0.2089 49 1 4.6118 14.0279 0.3297 50 1 5.6970 4.8034 -0.8907 51 1 7.1214 4.2156 -0.0002 52 1 5.7846 2.3254 -0.8892 53 1 5.7845 2.3265 0.8910 There are 80 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 80 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_40_15096584_16464698.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 13:12:52 Heat of formation + Delta-G solvation = -295.335833 kcal Electronic energy + Delta-G solvation = -45621.713305 eV Core-core repulsion = 39662.217662 eV Total energy + Delta-G solvation = -5959.495643 eV No. of doubly occupied orbitals = 80 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 447.131 amu Computer time = 1.43 seconds Orbital eigenvalues (eV) -49.07682 -43.62311 -42.21539 -41.78992 -39.12317 -38.75473 -38.46439 -37.89683 -37.68433 -37.44606 -37.13922 -34.25456 -32.73857 -32.59104 -32.08404 -30.95260 -29.10388 -27.30126 -26.94847 -25.28386 -24.79999 -24.15620 -23.55092 -23.31619 -22.23330 -21.81276 -20.85726 -20.07798 -19.69211 -19.14644 -19.06078 -18.81576 -18.41645 -18.22538 -17.82136 -17.71656 -17.67721 -17.16874 -16.97644 -16.78799 -16.44139 -16.21434 -16.06082 -15.99469 -15.61044 -15.31928 -15.31213 -14.98954 -14.89012 -14.64796 -14.52263 -14.44432 -14.24364 -14.15961 -14.04172 -13.99581 -13.79999 -13.72816 -13.62571 -13.48074 -13.42611 -13.23452 -13.18232 -13.15085 -13.07296 -12.92850 -12.61508 -12.47708 -12.33807 -12.19020 -12.09671 -11.95056 -11.74128 -11.63962 -11.57198 -11.40492 -11.35720 -11.13650 -10.13789 -9.45595 -5.07110 -1.37619 -0.41438 -0.34749 0.70570 1.06276 1.15924 1.45001 1.47562 1.59711 1.81993 2.01799 2.19159 2.27361 2.64369 2.83419 2.88019 3.09691 3.24417 3.28001 3.36223 3.47559 3.53294 3.55271 3.64099 3.71026 3.73306 3.79060 3.83725 3.94703 3.99480 4.01012 4.02471 4.03624 4.08632 4.15161 4.20096 4.28773 4.29636 4.32844 4.50303 4.53734 4.61611 4.63360 4.72179 4.78932 4.79212 4.80041 4.87303 4.89704 4.94469 5.01082 5.03484 5.09135 5.12327 5.25727 5.42245 5.73531 6.46539 6.62697 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.053 3.947 3 O -0.359 6.359 4 C 0.463 3.537 5 O -0.540 6.540 6 C -0.076 4.076 7 H 0.149 0.851 8 C -0.111 4.111 9 C -0.170 4.170 10 C 0.122 3.878 11 F -0.214 7.214 12 C -0.666 4.666 13 S 2.576 3.424 14 O -0.957 6.957 15 O -0.956 6.956 16 O -0.660 6.660 17 C 0.064 3.936 18 C -0.107 4.107 19 C -0.094 4.094 20 O -0.534 6.534 21 Si 0.805 3.195 22 C 0.048 3.952 23 C 0.044 3.956 24 C -0.064 4.064 25 C -0.107 4.107 26 O -0.305 6.305 27 C 0.198 3.802 28 O -0.309 6.309 29 C -0.121 4.121 30 C -0.111 4.111 31 H 0.095 0.905 32 H 0.067 0.933 33 H 0.071 0.929 34 H 0.069 0.931 35 H 0.063 0.937 36 H 0.099 0.901 37 H 0.057 0.943 38 H 0.074 0.926 39 H 0.138 0.862 40 H 0.203 0.797 41 H 0.187 0.813 42 H 0.065 0.935 43 H 0.379 0.621 44 H -0.264 1.264 45 H -0.264 1.264 46 H 0.197 0.803 47 H 0.209 0.791 48 H 0.165 0.835 49 H 0.105 0.895 50 H 0.131 0.869 51 H 0.101 0.899 52 H 0.088 0.912 53 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.376 3.417 -8.938 9.577 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.020 4.020 3 O -0.276 6.276 4 C 0.307 3.693 5 O -0.430 6.430 6 C -0.095 4.095 7 H 0.167 0.833 8 C -0.149 4.149 9 C -0.208 4.208 10 C 0.103 3.897 11 F -0.194 7.194 12 C -0.795 4.795 13 S 2.676 3.324 14 O -0.955 6.955 15 O -0.955 6.955 16 O -0.619 6.619 17 C 0.022 3.978 18 C -0.110 4.110 19 C -0.201 4.201 20 O -0.341 6.341 21 Si 0.703 3.297 22 C 0.003 3.997 23 C -0.002 4.002 24 C -0.082 4.082 25 C -0.127 4.127 26 O -0.221 6.221 27 C 0.087 3.913 28 O -0.225 6.225 29 C -0.160 4.160 30 C -0.149 4.149 31 H 0.113 0.887 32 H 0.086 0.914 33 H 0.090 0.910 34 H 0.088 0.912 35 H 0.082 0.918 36 H 0.118 0.882 37 H 0.075 0.925 38 H 0.093 0.907 39 H 0.157 0.843 40 H 0.221 0.779 41 H 0.205 0.795 42 H 0.083 0.917 43 H 0.228 0.772 44 H -0.189 1.189 45 H -0.189 1.189 46 H 0.214 0.786 47 H 0.225 0.775 48 H 0.182 0.818 49 H 0.122 0.878 50 H 0.149 0.851 51 H 0.120 0.880 52 H 0.106 0.894 53 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 0.658 4.697 -8.045 9.338 hybrid contribution 0.057 -1.771 -0.817 1.951 sum 0.715 2.926 -8.861 9.359 Atomic orbital electron populations 1.21823 0.90641 1.04240 1.03795 1.23240 0.96949 0.79440 1.02370 1.86509 1.24242 1.33358 1.83454 1.24303 0.80586 0.93337 0.71057 1.90674 1.61152 1.44502 1.46678 1.21295 0.96558 0.88472 1.03177 0.83321 1.21466 1.02831 0.94404 0.96201 1.22700 0.92013 0.98937 1.07135 1.20885 0.95120 0.88214 0.85519 1.92960 1.91364 1.81814 1.53282 1.31506 1.16593 1.07928 1.23500 1.05960 0.74299 0.74308 0.77851 1.93652 1.81531 1.74303 1.46019 1.93615 1.35390 1.79036 1.87436 1.85757 1.71646 1.42105 1.62415 1.17534 0.99947 0.92976 0.87365 1.19362 0.99298 0.95961 0.96392 1.25446 0.85944 1.15018 0.93721 1.86650 1.16235 1.46480 1.84708 0.92667 0.76491 0.71514 0.89076 1.19305 0.93390 0.93058 0.93980 1.20397 0.97167 0.94662 0.87983 1.20451 0.93409 0.91331 1.03029 1.21726 1.00649 1.02070 0.88259 1.87494 1.70447 1.32800 1.31336 1.26247 1.03617 0.88638 0.72750 1.87529 1.54708 1.35419 1.44847 1.22170 1.03272 0.94307 0.96206 1.21480 0.91721 0.97823 1.03899 0.88660 0.91380 0.90976 0.91224 0.91846 0.88227 0.92462 0.90734 0.84339 0.77944 0.79547 0.91690 0.77194 1.18933 1.18878 0.78564 0.77467 0.81772 0.87791 0.85062 0.88017 0.89359 0.92703 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 0.49 10.29 71.98 0.74 1.23 16 2 C 0.05 0.08 6.19 71.98 0.45 0.52 16 3 O -0.36 -1.18 10.12 -51.36 -0.52 -1.70 16 4 C 0.46 1.97 7.26 71.24 0.52 2.48 16 5 O -0.54 -6.00 15.73 21.98 0.35 -5.65 16 6 C -0.08 0.25 2.63 -11.54 -0.03 0.22 16 7 H 0.15 -1.51 8.14 -2.39 -0.02 -1.52 16 8 C -0.11 0.24 5.01 30.59 0.15 0.39 16 9 C -0.17 0.77 4.56 30.59 0.14 0.91 16 10 C 0.12 -0.53 0.88 -10.79 -0.01 -0.54 16 11 F -0.21 -1.10 14.81 44.97 0.67 -0.43 16 12 C -0.67 6.08 4.30 71.99 0.31 6.39 16 13 S 2.58 6.82 4.13 -56.49 -0.23 6.59 16 14 O -0.96 -12.06 17.31 -118.57 -2.05 -14.11 16 15 O -0.96 -4.19 13.60 -118.57 -1.61 -5.80 16 16 O -0.66 -1.57 8.90 -62.39 -0.56 -2.12 16 17 C 0.06 0.03 4.70 22.48 0.11 0.14 16 18 C -0.11 -0.58 3.97 -19.70 -0.08 -0.66 16 19 C -0.09 -0.71 2.13 71.23 0.15 -0.56 16 20 O -0.53 -4.64 12.41 -148.98 -1.85 -6.49 16 21 Si 0.81 3.95 32.13 68.60 2.20 6.15 16 22 C 0.05 0.23 5.94 22.59 0.13 0.36 16 23 C 0.04 -0.02 7.15 22.58 0.16 0.14 16 24 C -0.06 0.52 10.05 22.34 0.22 0.75 16 25 C -0.11 0.94 8.43 22.38 0.19 1.12 16 26 O -0.30 0.06 11.42 -79.79 -0.91 -0.85 16 27 C 0.20 -0.46 8.88 113.37 1.01 0.55 16 28 O -0.31 -1.78 10.42 -76.12 -0.79 -2.58 16 29 C -0.12 1.14 5.00 30.59 0.15 1.29 16 30 C -0.11 0.34 4.37 30.59 0.13 0.47 16 31 H 0.09 -0.57 8.14 -2.39 -0.02 -0.59 16 32 H 0.07 -0.20 8.14 -2.39 -0.02 -0.22 16 33 H 0.07 -0.28 8.14 -2.39 -0.02 -0.30 16 34 H 0.07 0.10 8.13 -2.39 -0.02 0.08 16 35 H 0.06 0.17 8.13 -2.39 -0.02 0.15 16 36 H 0.10 -0.36 8.11 -2.39 -0.02 -0.38 16 37 H 0.06 0.15 7.80 -2.39 -0.02 0.13 16 38 H 0.07 -0.06 5.77 -2.38 -0.01 -0.07 16 39 H 0.14 -1.65 8.14 -2.39 -0.02 -1.67 16 40 H 0.20 -3.80 6.62 -2.39 -0.02 -3.81 16 41 H 0.19 -2.75 8.14 -2.39 -0.02 -2.77 16 42 H 0.07 0.48 6.42 -2.38 -0.02 0.47 16 43 H 0.38 2.29 8.71 -74.06 -0.65 1.64 16 44 H -0.26 -1.84 7.11 99.48 0.71 -1.13 16 45 H -0.26 -2.30 6.93 99.48 0.69 -1.61 16 46 H 0.20 -3.11 8.06 -2.91 -0.02 -3.14 16 47 H 0.21 -3.98 7.00 -2.91 -0.02 -4.00 16 48 H 0.17 -1.34 8.14 -2.39 -0.02 -1.36 16 49 H 0.10 -0.61 8.14 -2.39 -0.02 -0.63 16 50 H 0.13 -2.23 8.14 -2.39 -0.02 -2.25 16 51 H 0.10 -1.12 8.14 -2.39 -0.02 -1.14 16 52 H 0.09 -0.30 8.10 -2.39 -0.02 -0.32 16 53 H 0.05 0.17 7.76 -2.39 -0.02 0.15 16 Total: 0.00 -35.57 438.81 -0.51 -36.08 By element: Atomic # 1 Polarization: -24.65 SS G_CDS: 0.35 Total: -24.30 kcal Atomic # 6 Polarization: 10.76 SS G_CDS: 4.45 Total: 15.21 kcal Atomic # 8 Polarization: -31.35 SS G_CDS: -7.95 Total: -39.29 kcal Atomic # 9 Polarization: -1.10 SS G_CDS: 0.67 Total: -0.43 kcal Atomic # 14 Polarization: 3.95 SS G_CDS: 2.20 Total: 6.15 kcal Atomic # 16 Polarization: 6.82 SS G_CDS: -0.23 Total: 6.59 kcal Total: -35.57 -0.51 -36.08 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_40_15096584_16464698.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -259.260 kcal (2) G-P(sol) polarization free energy of solvation -35.566 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -294.826 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.510 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.076 kcal (6) G-S(sol) free energy of system = (1) + (5) -295.336 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.43 seconds