Wall clock time and date at job start Tue Mar 9 2021 12:53:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42910 * 1 3 3 Si 1.86296 * 109.46796 * 2 1 4 4 C 1.50700 * 109.46908 * 239.99963 * 2 1 3 5 5 C 1.33395 * 125.20404 * 317.81684 * 4 2 1 6 6 S 1.76202 * 122.53670 * 0.02562 * 5 4 2 7 7 O 1.42094 * 106.40360 * 313.51547 * 6 5 4 8 8 O 1.42097 * 106.39864 * 180.59590 * 6 5 4 9 9 N 1.65600 * 107.21627 * 67.05955 * 6 5 4 10 10 C 1.46499 * 120.00192 * 63.78708 * 9 6 5 11 11 H 1.08999 * 112.84881 * 345.66716 * 10 9 6 12 12 C 1.53786 * 113.61526 * 116.97439 * 10 9 6 13 13 C 1.53779 * 87.08042 * 89.11438 * 12 10 9 14 14 H 1.09000 * 113.69134 * 270.87171 * 13 12 10 15 15 C 1.50704 * 113.61187 * 139.98384 * 13 12 10 16 16 N 1.30499 * 125.64875 * 167.48118 * 15 13 12 17 17 C 1.34124 * 109.25710 * 180.02562 * 16 15 13 18 18 C 1.34675 * 108.01864 * 0.02562 * 17 16 15 19 19 N 1.35043 * 125.65166 * 347.78536 * 15 13 12 20 20 C 1.53781 * 113.61521 * 214.47105 * 10 9 6 21 21 C 1.38423 * 114.91826 * 179.75522 * 5 4 2 22 22 C 1.33384 * 114.92258 * 0.24298 * 21 5 4 23 23 S 1.75881 * 125.20272 * 137.95454 * 4 2 1 24 24 H 0.96708 * 113.99591 * 299.99586 * 1 2 3 25 25 H 1.08998 * 109.47232 * 119.99980 * 2 1 3 26 26 H 1.48504 * 109.99691 * 178.68347 * 3 2 1 27 27 H 1.48503 * 110.00029 * 299.99901 * 3 2 1 28 28 H 0.97001 * 119.99821 * 243.78612 * 9 6 5 29 29 H 1.09009 * 113.61242 * 334.56996 * 12 10 9 30 30 H 1.08992 * 113.61866 * 203.66658 * 12 10 9 31 31 H 1.07998 * 125.99543 * 179.97438 * 17 16 15 32 32 H 1.08001 * 126.58819 * 179.97438 * 18 17 16 33 33 H 0.97004 * 126.39508 * 0.02562 * 19 15 13 34 34 H 1.08999 * 113.61585 * 156.33745 * 20 10 9 35 35 H 1.08999 * 113.61192 * 25.42879 * 20 10 9 36 36 H 1.07997 * 122.53638 * 180.26884 * 21 5 4 37 37 H 1.08002 * 125.20540 * 180.02562 * 22 21 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4291 0.0000 0.0000 3 14 2.0500 1.7565 0.0000 4 6 1.9314 -0.7104 -1.2305 5 6 1.4262 -1.8414 -1.7255 6 16 0.0640 -2.6761 -0.9822 7 8 0.3381 -2.7297 0.4110 8 8 -0.1772 -3.8326 -1.7719 9 7 -1.2638 -1.7028 -1.1606 10 6 -1.7715 -1.3946 -2.4998 11 1 -1.0641 -1.6481 -3.2893 12 6 -3.1951 -1.9175 -2.7544 13 6 -3.7026 -0.5778 -2.1955 14 1 -3.8534 -0.5825 -1.1160 15 6 -4.8815 -0.0173 -2.9486 16 7 -5.6385 0.9689 -2.5518 17 6 -6.5876 1.1960 -3.4718 18 6 -6.4125 0.3167 -4.4768 19 7 -5.3332 -0.4562 -4.1432 20 6 -2.3542 0.0229 -2.6266 21 6 2.0494 -2.3064 -2.8707 22 6 3.0639 -1.5558 -3.3028 23 16 3.2755 -0.1770 -2.2315 24 1 -0.3933 0.4417 0.7652 25 1 1.7924 -0.5138 0.8900 26 1 3.5346 1.7703 0.0321 27 1 1.5614 2.4679 -1.2085 28 1 -1.7054 -1.3367 -0.3784 29 1 -3.4614 -2.7765 -2.1383 30 1 -3.4239 -2.0651 -3.8097 31 1 -7.3578 1.9510 -3.4162 32 1 -7.0110 0.2347 -5.3721 33 1 -4.9615 -1.1828 -4.6675 34 1 -2.3531 0.4059 -3.6471 35 1 -1.9416 0.7305 -1.9074 36 1 1.7376 -3.2083 -3.3763 37 1 3.6634 -1.7628 -4.1769 There are 56 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 56 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_40_16969938_14772022.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 12:53:25 Heat of formation + Delta-G solvation = 31.801141 kcal Electronic energy + Delta-G solvation = -26151.144550 eV Core-core repulsion = 22344.423177 eV Total energy + Delta-G solvation = -3806.721372 eV No. of doubly occupied orbitals = 56 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 342.054 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -43.03521 -40.11595 -39.52239 -38.38678 -37.35168 -36.92273 -33.95586 -33.36318 -31.98488 -30.33567 -27.51199 -26.66778 -26.01785 -24.29714 -22.59947 -21.88563 -21.71755 -20.68451 -20.09530 -19.16924 -18.73841 -18.56779 -18.10232 -17.79430 -16.97992 -16.29701 -16.05548 -15.88722 -15.66448 -15.39874 -15.15163 -14.97808 -14.58727 -14.54590 -14.43661 -14.16872 -13.87227 -13.74789 -13.36376 -13.31311 -13.23801 -13.13136 -12.80636 -12.71060 -12.18859 -12.11178 -11.92549 -11.75050 -11.41837 -10.99610 -10.97125 -10.76928 -10.30774 -10.17559 -9.82409 -9.29869 -5.19311 -0.69659 -0.52324 0.23439 0.59107 1.01708 1.13518 1.14142 1.56518 1.86081 2.06747 2.16863 2.26795 2.71599 3.10496 3.35479 3.42942 3.50843 3.63633 3.68712 3.88646 3.99717 4.16372 4.20628 4.24154 4.31595 4.42221 4.56480 4.61962 4.70270 4.71012 4.73175 4.82593 4.99930 5.04083 5.07165 5.15535 5.18212 5.45775 5.83016 6.30234 6.53236 6.77396 7.18005 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.548 6.548 2 C -0.076 4.076 3 Si 0.772 3.228 4 C -0.058 4.058 5 C -0.675 4.675 6 S 2.737 3.263 7 O -0.976 6.976 8 O -0.992 6.992 9 N -1.058 6.058 10 C 0.135 3.865 11 H 0.104 0.896 12 C -0.148 4.148 13 C -0.024 4.024 14 H 0.122 0.878 15 C 0.212 3.788 16 N -0.531 5.531 17 C -0.064 4.064 18 C -0.048 4.048 19 N -0.559 5.559 20 C -0.121 4.121 21 C -0.093 4.093 22 C -0.206 4.206 23 S 0.118 5.882 24 H 0.417 0.583 25 H 0.118 0.882 26 H -0.269 1.269 27 H -0.273 1.273 28 H 0.432 0.568 29 H 0.086 0.914 30 H 0.102 0.898 31 H 0.176 0.824 32 H 0.207 0.793 33 H 0.431 0.569 34 H 0.089 0.911 35 H 0.095 0.905 36 H 0.166 0.834 37 H 0.198 0.802 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.153 3.146 -1.696 3.577 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.361 6.361 2 C -0.187 4.187 3 Si 0.673 3.327 4 C -0.178 4.178 5 C -0.774 4.774 6 S 2.824 3.176 7 O -0.966 6.966 8 O -0.982 6.982 9 N -0.820 5.820 10 C 0.026 3.974 11 H 0.122 0.878 12 C -0.188 4.188 13 C -0.044 4.044 14 H 0.140 0.860 15 C -0.053 4.053 16 N -0.251 5.251 17 C -0.210 4.210 18 C -0.182 4.182 19 N -0.164 5.164 20 C -0.162 4.162 21 C -0.121 4.121 22 C -0.341 4.341 23 S 0.381 5.619 24 H 0.272 0.728 25 H 0.135 0.865 26 H -0.196 1.196 27 H -0.199 1.199 28 H 0.272 0.728 29 H 0.104 0.896 30 H 0.121 0.879 31 H 0.193 0.807 32 H 0.224 0.776 33 H 0.272 0.728 34 H 0.108 0.892 35 H 0.114 0.886 36 H 0.183 0.817 37 H 0.215 0.785 Dipole moment (debyes) X Y Z Total from point charges 1.919 4.232 -1.659 4.934 hybrid contribution -0.670 -1.653 -1.419 2.279 sum 1.249 2.578 -3.078 4.205 Atomic orbital electron populations 1.86310 1.14888 1.82617 1.52313 1.24589 0.87900 1.11492 0.94727 0.93446 0.78830 0.74638 0.85789 1.24069 0.98417 0.95963 0.99381 1.29949 1.25414 1.10438 1.11601 1.00515 0.72583 0.72352 0.72193 1.93529 1.84921 1.86636 1.31502 1.93553 1.85094 1.46993 1.72535 1.54793 1.44386 1.69291 1.13566 1.21502 0.95550 0.96633 0.83692 0.87799 1.23596 0.95587 0.96856 1.02768 1.21121 0.87703 0.95822 0.99732 0.85964 1.23389 0.99488 0.95482 0.86909 1.70176 1.07384 1.16825 1.30750 1.22729 1.01494 1.03842 0.92980 1.23255 0.94309 0.96898 1.03719 1.43288 1.25094 1.29518 1.18467 1.23330 0.93050 0.96613 1.03176 1.19980 0.95838 1.01756 0.94543 1.26190 1.04007 0.98569 1.05337 1.84586 1.30841 1.26887 1.19592 0.72778 0.86487 1.19552 1.19886 0.72827 0.89551 0.87945 0.80688 0.77637 0.72807 0.89222 0.88629 0.81686 0.78477 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.55 4.36 7.88 -136.64 -1.08 3.28 16 2 C -0.08 0.28 2.13 71.24 0.15 0.43 16 3 Si 0.77 -4.11 31.13 68.60 2.14 -1.98 16 4 C -0.06 -0.12 5.77 24.59 0.14 0.02 16 5 C -0.67 -2.39 5.75 21.22 0.12 -2.27 16 6 S 2.74 11.41 4.86 -56.49 -0.27 11.14 16 7 O -0.98 -8.19 16.60 -122.07 -2.03 -10.21 16 8 O -0.99 -9.87 17.13 -128.00 -2.19 -12.06 16 9 N -1.06 3.28 3.89 -167.19 -0.65 2.63 16 10 C 0.13 -0.58 4.43 45.52 0.20 -0.38 16 11 H 0.10 -0.49 8.05 -2.39 -0.02 -0.51 16 12 C -0.15 0.77 7.35 31.12 0.23 0.99 16 13 C -0.02 0.07 4.12 -11.01 -0.05 0.02 16 14 H 0.12 -0.42 8.12 -2.39 -0.02 -0.44 16 15 C 0.21 0.52 7.36 138.13 1.02 1.53 16 16 N -0.53 -4.57 11.25 -188.13 -2.12 -6.69 16 17 C -0.06 -0.32 11.87 83.53 0.99 0.68 16 18 C -0.05 0.03 12.04 83.09 1.00 1.03 16 19 N -0.56 1.10 5.94 -186.27 -1.11 0.00 16 20 C -0.12 0.56 7.41 31.12 0.23 0.79 16 21 C -0.09 -0.24 9.69 21.21 0.21 -0.03 16 22 C -0.21 -0.08 11.23 66.72 0.75 0.67 16 23 S 0.12 0.22 20.79 -56.49 -1.17 -0.95 16 24 H 0.42 -7.47 8.74 -74.05 -0.65 -8.12 16 25 H 0.12 -0.58 7.92 -2.39 -0.02 -0.59 16 26 H -0.27 0.02 7.11 99.48 0.71 0.73 16 27 H -0.27 -0.23 7.11 99.48 0.71 0.47 16 28 H 0.43 -3.07 7.66 -96.74 -0.74 -3.81 16 29 H 0.09 -0.35 8.14 -2.38 -0.02 -0.37 16 30 H 0.10 -0.88 6.64 -2.39 -0.02 -0.90 16 31 H 0.18 0.30 8.06 -2.91 -0.02 0.28 16 32 H 0.21 -1.60 8.06 -2.91 -0.02 -1.62 16 33 H 0.43 -3.50 7.53 -92.71 -0.70 -4.20 16 34 H 0.09 -0.38 8.09 -2.39 -0.02 -0.40 16 35 H 0.10 -0.47 8.14 -2.39 -0.02 -0.49 16 36 H 0.17 0.12 7.74 -2.91 -0.02 0.10 16 37 H 0.20 -1.01 8.06 -2.91 -0.02 -1.03 16 Total: 0.00 -27.86 333.79 -4.38 -32.25 By element: Atomic # 1 Polarization: -20.00 SS G_CDS: -0.90 Total: -20.90 kcal Atomic # 6 Polarization: -1.51 SS G_CDS: 5.00 Total: 3.49 kcal Atomic # 7 Polarization: -0.18 SS G_CDS: -3.87 Total: -4.05 kcal Atomic # 8 Polarization: -13.70 SS G_CDS: -5.30 Total: -18.99 kcal Atomic # 14 Polarization: -4.11 SS G_CDS: 2.14 Total: -1.98 kcal Atomic # 16 Polarization: 11.63 SS G_CDS: -1.45 Total: 10.18 kcal Total: -27.86 -4.38 -32.25 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_40_16969938_14772022.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.049 kcal (2) G-P(sol) polarization free energy of solvation -27.865 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.184 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.383 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -32.248 kcal (6) G-S(sol) free energy of system = (1) + (5) 31.801 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds