Wall clock time and date at job start Tue Mar 9 2021 12:53:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42903 * 1 3 3 Si 1.86305 * 109.46645 * 2 1 4 4 C 1.50696 * 109.47131 * 240.00209 * 2 1 3 5 5 C 1.33387 * 125.20021 * 299.71161 * 4 2 1 6 6 C 1.38426 * 114.92145 * 179.86134 * 5 4 2 7 7 S 1.76197 * 122.54279 * 180.20394 * 6 5 4 8 8 O 1.42093 * 106.40508 * 23.75921 * 7 6 5 9 9 O 1.42101 * 106.40233 * 156.68233 * 7 6 5 10 10 N 1.65605 * 107.21778 * 270.22017 * 7 6 5 11 11 C 1.46506 * 119.99612 * 64.99792 * 10 7 6 12 12 H 1.08993 * 112.85060 * 346.19813 * 11 10 7 13 13 C 1.53783 * 113.61221 * 117.50247 * 11 10 7 14 14 C 1.53783 * 87.08045 * 89.11264 * 13 11 10 15 15 H 1.08997 * 113.61961 * 270.88551 * 14 13 11 16 16 C 1.50703 * 113.61138 * 139.97595 * 14 13 11 17 17 N 1.30503 * 125.64449 * 167.19570 * 16 14 13 18 18 C 1.34128 * 109.25273 * 179.89857 * 17 16 14 19 19 C 1.34665 * 108.02283 * 0.37144 * 18 17 16 20 20 N 1.35045 * 125.65386 * 347.51138 * 16 14 13 21 21 C 1.53779 * 113.61067 * 214.99712 * 11 10 7 22 22 C 1.33390 * 114.91895 * 0.43315 * 6 5 4 23 23 S 1.75880 * 125.20587 * 120.02001 * 4 2 1 24 24 H 0.96700 * 114.00311 * 60.00382 * 1 2 3 25 25 H 1.08999 * 109.47293 * 119.99810 * 2 1 3 26 26 H 1.48499 * 109.99670 * 298.67876 * 3 2 1 27 27 H 1.48497 * 110.00233 * 59.99845 * 3 2 1 28 28 H 1.07998 * 122.54242 * 0.02562 * 5 4 2 29 29 H 0.97000 * 120.00519 * 244.99903 * 10 7 6 30 30 H 1.08998 * 113.61746 * 203.66089 * 13 11 10 31 31 H 1.09000 * 113.61645 * 334.57244 * 13 11 10 32 32 H 1.08001 * 125.99115 * 180.12126 * 18 17 16 33 33 H 1.07999 * 126.59964 * 179.81731 * 19 18 17 34 34 H 0.96993 * 126.39336 * 359.97438 * 20 16 14 35 35 H 1.09000 * 113.61762 * 25.44344 * 21 11 10 36 36 H 1.09004 * 113.60952 * 156.34050 * 21 11 10 37 37 H 1.08006 * 125.20487 * 179.74937 * 22 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0499 1.7566 0.0000 4 6 1.9314 -0.7103 -1.2304 5 6 1.6783 -1.9827 -1.5409 6 6 2.2453 -2.4176 -2.7265 7 16 2.0358 -4.0593 -3.3310 8 8 0.8377 -4.5521 -2.7473 9 8 2.2495 -4.0004 -4.7346 10 7 3.2692 -4.9722 -2.7081 11 6 3.3557 -5.1982 -1.2632 12 1 2.7094 -4.5325 -0.6912 13 6 3.2286 -6.6774 -0.8624 14 6 4.7553 -6.7704 -1.0223 15 1 5.0736 -7.0320 -2.0314 16 6 5.4235 -7.6063 0.0389 17 7 6.6550 -8.0367 0.0044 18 6 6.9071 -8.7454 1.1149 19 6 5.7869 -8.7614 1.8622 20 7 4.8454 -8.0389 1.1801 21 6 4.7985 -5.2604 -0.7348 22 6 2.9662 -1.5011 -3.3742 23 16 2.9472 0.0091 -2.4729 24 1 -0.3934 0.4416 -0.7651 25 1 1.7924 -0.5138 0.8900 26 1 1.5877 2.4585 -1.2243 27 1 1.5613 2.4680 1.2084 28 1 1.0746 -2.6241 -0.9161 29 1 3.9344 -5.3572 -3.2999 30 1 2.8871 -6.8245 0.1622 31 1 2.6767 -7.2796 -1.5842 32 1 7.8430 -9.2233 1.3641 33 1 5.6564 -9.2498 2.8166 34 1 3.9333 -7.8695 1.4632 35 1 5.5138 -4.7183 -1.3533 36 1 4.8861 -5.0200 0.3248 37 1 3.4828 -1.6619 -4.3089 There are 56 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 56 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_40_16969938_15065232.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 12:53:28 Heat of formation + Delta-G solvation = 25.612211 kcal Electronic energy + Delta-G solvation = -25034.805200 eV Core-core repulsion = 21227.815456 eV Total energy + Delta-G solvation = -3806.989744 eV No. of doubly occupied orbitals = 56 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 342.054 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -43.09026 -40.37630 -39.60321 -38.26455 -37.72630 -36.91129 -34.27807 -33.39170 -31.93096 -30.43903 -27.33964 -26.98113 -26.21596 -25.01360 -22.69142 -21.80581 -21.54262 -20.90017 -20.36750 -19.37136 -19.08011 -18.44521 -17.96917 -17.71194 -17.18577 -16.53446 -16.35530 -15.95969 -15.82520 -15.62830 -15.39367 -15.00747 -14.71745 -14.60471 -14.33919 -14.26394 -14.11595 -13.89497 -13.65137 -13.43279 -13.20309 -13.08847 -12.98712 -12.51949 -12.42117 -12.37776 -12.11232 -11.70597 -11.64638 -10.97036 -10.95895 -10.94899 -10.73040 -10.30929 -9.93375 -9.33673 -5.24144 -0.83680 -0.55237 0.23403 0.49850 0.87177 1.07952 1.08308 1.39656 1.75511 1.91050 2.11907 2.19299 2.64886 3.07173 3.12002 3.22481 3.26394 3.38988 3.51319 3.60542 3.74912 3.83867 3.91336 4.11513 4.14893 4.30360 4.38595 4.42205 4.48433 4.52577 4.59961 4.71215 4.79539 4.80142 4.85294 4.97493 5.09786 5.18642 5.73761 5.81070 6.16239 6.37465 7.16172 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.521 6.521 2 C -0.033 4.033 3 Si 0.650 3.350 4 C -0.227 4.227 5 C -0.047 4.047 6 C -0.689 4.689 7 S 2.710 3.290 8 O -0.945 6.945 9 O -0.953 6.953 10 N -1.096 6.096 11 C 0.132 3.868 12 H 0.108 0.892 13 C -0.150 4.150 14 C -0.026 4.026 15 H 0.121 0.879 16 C 0.218 3.782 17 N -0.487 5.487 18 C -0.027 4.027 19 C -0.056 4.056 20 N -0.566 5.566 21 C -0.132 4.132 22 C -0.081 4.081 23 S 0.163 5.837 24 H 0.379 0.621 25 H 0.130 0.870 26 H -0.240 1.240 27 H -0.233 1.233 28 H 0.157 0.843 29 H 0.422 0.578 30 H 0.090 0.910 31 H 0.090 0.910 32 H 0.171 0.829 33 H 0.178 0.822 34 H 0.418 0.582 35 H 0.088 0.912 36 H 0.096 0.904 37 H 0.187 0.813 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.516 1.933 3.578 4.782 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.328 6.328 2 C -0.145 4.145 3 Si 0.549 3.451 4 C -0.345 4.345 5 C -0.075 4.075 6 C -0.788 4.788 7 S 2.797 3.203 8 O -0.935 6.935 9 O -0.943 6.943 10 N -0.855 5.855 11 C 0.023 3.977 12 H 0.126 0.874 13 C -0.190 4.190 14 C -0.046 4.046 15 H 0.139 0.861 16 C -0.046 4.046 17 N -0.206 5.206 18 C -0.175 4.175 19 C -0.189 4.189 20 N -0.169 5.169 21 C -0.172 4.172 22 C -0.220 4.220 23 S 0.427 5.573 24 H 0.227 0.773 25 H 0.147 0.853 26 H -0.164 1.164 27 H -0.156 1.156 28 H 0.174 0.826 29 H 0.258 0.742 30 H 0.108 0.892 31 H 0.109 0.891 32 H 0.188 0.812 33 H 0.195 0.805 34 H 0.256 0.744 35 H 0.107 0.893 36 H 0.115 0.885 37 H 0.204 0.796 Dipole moment (debyes) X Y Z Total from point charges 2.841 3.856 2.871 5.584 hybrid contribution -1.857 -1.376 0.718 2.420 sum 0.985 2.480 3.589 4.472 Atomic orbital electron populations 1.86642 1.16953 1.79877 1.49328 1.24401 0.84032 1.10071 0.96015 0.95345 0.91534 0.75018 0.83232 1.25024 1.07817 0.98821 1.02795 1.19614 0.98243 0.95254 0.94434 1.30022 1.14527 1.25937 1.08330 1.01640 0.73055 0.72751 0.72903 1.93621 1.43030 1.78109 1.78768 1.93628 1.85483 1.86812 1.28365 1.55395 1.48300 1.67318 1.14467 1.21552 0.98653 0.97417 0.80055 0.87382 1.23534 0.95214 0.97344 1.02913 1.21044 0.94016 0.93133 0.96401 0.86094 1.22946 0.90332 1.01921 0.89443 1.70249 1.13272 1.14076 1.23020 1.22416 0.99196 1.03512 0.92388 1.22821 0.90621 1.04158 1.01350 1.43266 1.14213 1.41401 1.18065 1.23432 0.96285 0.94724 1.02800 1.25933 0.97963 0.95936 1.02209 1.84446 1.46203 1.12782 1.13913 0.77254 0.85267 1.16355 1.15555 0.82582 0.74207 0.89209 0.89107 0.81208 0.80491 0.74385 0.89290 0.88513 0.79628 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 34. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.52 -0.02 12.86 -35.23 -0.45 -0.48 16 2 C -0.03 0.05 2.96 36.00 0.11 0.16 16 3 Si 0.65 -1.31 30.97 -169.99 -5.26 -6.57 16 4 C -0.23 0.27 5.72 -36.01 -0.21 0.06 16 5 C -0.05 0.03 9.47 -41.21 -0.39 -0.36 16 6 C -0.69 0.46 5.86 -41.21 -0.24 0.21 16 7 S 2.71 0.32 5.74 -107.50 -0.62 -0.30 16 8 O -0.95 -3.02 17.40 -57.17 -0.99 -4.01 16 9 O -0.95 -2.83 17.64 -57.17 -1.01 -3.84 16 10 N -1.10 3.21 5.73 -4.20 -0.02 3.18 16 11 C 0.13 -0.46 4.44 -67.11 -0.30 -0.76 16 12 H 0.11 -0.48 7.95 -51.93 -0.41 -0.89 16 13 C -0.15 0.50 7.35 -25.92 -0.19 0.31 16 14 C -0.03 0.05 4.11 -90.96 -0.37 -0.32 16 15 H 0.12 -0.26 8.10 -51.93 -0.42 -0.68 16 16 C 0.22 0.14 7.36 -155.41 -1.14 -1.01 16 17 N -0.49 -1.73 11.25 -10.81 -0.12 -1.85 16 18 C -0.03 -0.05 11.87 -17.81 -0.21 -0.26 16 19 C -0.06 0.03 12.04 -16.56 -0.20 -0.17 16 20 N -0.57 0.73 5.94 -10.23 -0.06 0.67 16 21 C -0.13 0.46 7.41 -25.92 -0.19 0.27 16 22 C -0.08 0.12 10.70 29.04 0.31 0.43 16 23 S 0.16 -0.31 20.58 -107.50 -2.21 -2.52 16 24 H 0.38 -0.97 8.70 45.56 0.40 -0.57 16 25 H 0.13 -0.38 7.96 -51.93 -0.41 -0.79 16 26 H -0.24 0.03 7.11 56.52 0.40 0.43 16 27 H -0.23 -0.19 7.11 56.52 0.40 0.21 16 28 H 0.16 -0.15 7.97 -52.49 -0.42 -0.57 16 29 H 0.42 -1.89 8.78 -34.48 -0.30 -2.19 16 30 H 0.09 -0.43 6.64 -51.93 -0.34 -0.78 16 31 H 0.09 -0.25 8.14 -51.93 -0.42 -0.67 16 32 H 0.17 -0.01 8.06 -52.49 -0.42 -0.43 16 33 H 0.18 -0.62 8.06 -52.49 -0.42 -1.05 16 34 H 0.42 -1.76 7.53 -40.82 -0.31 -2.06 16 35 H 0.09 -0.32 8.14 -51.93 -0.42 -0.74 16 36 H 0.10 -0.35 8.09 -51.93 -0.42 -0.77 16 37 H 0.19 -0.62 8.00 -52.48 -0.42 -1.04 16 LS Contribution 343.75 15.07 5.18 5.18 Total: 0.00 -12.03 343.75 -12.56 -24.59 By element: Atomic # 1 Polarization: -8.66 SS G_CDS: -3.95 Total: -12.62 kcal Atomic # 6 Polarization: 1.59 SS G_CDS: -3.03 Total: -1.44 kcal Atomic # 7 Polarization: 2.21 SS G_CDS: -0.21 Total: 2.00 kcal Atomic # 8 Polarization: -5.87 SS G_CDS: -2.46 Total: -8.33 kcal Atomic # 14 Polarization: -1.31 SS G_CDS: -5.26 Total: -6.57 kcal Atomic # 16 Polarization: 0.01 SS G_CDS: -2.83 Total: -2.82 kcal Total LS contribution 5.18 Total: 5.18 kcal Total: -12.03 -12.56 -24.59 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_40_16969938_15065232.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.202 kcal (2) G-P(sol) polarization free energy of solvation -12.031 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 38.171 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.559 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -24.590 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.612 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds