Wall clock time and date at job start Tue Mar 9 2021 12:53:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42903 * 1 3 3 Si 1.86305 * 109.46645 * 2 1 4 4 C 1.50696 * 109.47131 * 240.00209 * 2 1 3 5 5 C 1.33387 * 125.20021 * 299.71161 * 4 2 1 6 6 C 1.38426 * 114.92145 * 179.86134 * 5 4 2 7 7 S 1.76197 * 122.54279 * 180.20394 * 6 5 4 8 8 O 1.42093 * 106.40508 * 23.75921 * 7 6 5 9 9 O 1.42101 * 106.40233 * 156.68233 * 7 6 5 10 10 N 1.65605 * 107.21778 * 270.22017 * 7 6 5 11 11 C 1.46506 * 119.99612 * 64.99792 * 10 7 6 12 12 H 1.08993 * 112.85060 * 346.19813 * 11 10 7 13 13 C 1.53783 * 113.61221 * 117.50247 * 11 10 7 14 14 C 1.53783 * 87.08045 * 89.11264 * 13 11 10 15 15 H 1.08997 * 113.61961 * 270.88551 * 14 13 11 16 16 C 1.50703 * 113.61138 * 139.97595 * 14 13 11 17 17 N 1.30503 * 125.64449 * 167.19570 * 16 14 13 18 18 C 1.34128 * 109.25273 * 179.89857 * 17 16 14 19 19 C 1.34665 * 108.02283 * 0.37144 * 18 17 16 20 20 N 1.35045 * 125.65386 * 347.51138 * 16 14 13 21 21 C 1.53779 * 113.61067 * 214.99712 * 11 10 7 22 22 C 1.33390 * 114.91895 * 0.43315 * 6 5 4 23 23 S 1.75880 * 125.20587 * 120.02001 * 4 2 1 24 24 H 0.96700 * 114.00311 * 60.00382 * 1 2 3 25 25 H 1.08999 * 109.47293 * 119.99810 * 2 1 3 26 26 H 1.48499 * 109.99670 * 298.67876 * 3 2 1 27 27 H 1.48497 * 110.00233 * 59.99845 * 3 2 1 28 28 H 1.07998 * 122.54242 * 0.02562 * 5 4 2 29 29 H 0.97000 * 120.00519 * 244.99903 * 10 7 6 30 30 H 1.08998 * 113.61746 * 203.66089 * 13 11 10 31 31 H 1.09000 * 113.61645 * 334.57244 * 13 11 10 32 32 H 1.08001 * 125.99115 * 180.12126 * 18 17 16 33 33 H 1.07999 * 126.59964 * 179.81731 * 19 18 17 34 34 H 0.96993 * 126.39336 * 359.97438 * 20 16 14 35 35 H 1.09000 * 113.61762 * 25.44344 * 21 11 10 36 36 H 1.09004 * 113.60952 * 156.34050 * 21 11 10 37 37 H 1.08006 * 125.20487 * 179.74937 * 22 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0499 1.7566 0.0000 4 6 1.9314 -0.7103 -1.2304 5 6 1.6783 -1.9827 -1.5409 6 6 2.2453 -2.4176 -2.7265 7 16 2.0358 -4.0593 -3.3310 8 8 0.8377 -4.5521 -2.7473 9 8 2.2495 -4.0004 -4.7346 10 7 3.2692 -4.9722 -2.7081 11 6 3.3557 -5.1982 -1.2632 12 1 2.7094 -4.5325 -0.6912 13 6 3.2286 -6.6774 -0.8624 14 6 4.7553 -6.7704 -1.0223 15 1 5.0736 -7.0320 -2.0314 16 6 5.4235 -7.6063 0.0389 17 7 6.6550 -8.0367 0.0044 18 6 6.9071 -8.7454 1.1149 19 6 5.7869 -8.7614 1.8622 20 7 4.8454 -8.0389 1.1801 21 6 4.7985 -5.2604 -0.7348 22 6 2.9662 -1.5011 -3.3742 23 16 2.9472 0.0091 -2.4729 24 1 -0.3934 0.4416 -0.7651 25 1 1.7924 -0.5138 0.8900 26 1 1.5877 2.4585 -1.2243 27 1 1.5613 2.4680 1.2084 28 1 1.0746 -2.6241 -0.9161 29 1 3.9344 -5.3572 -3.2999 30 1 2.8871 -6.8245 0.1622 31 1 2.6767 -7.2796 -1.5842 32 1 7.8430 -9.2233 1.3641 33 1 5.6564 -9.2498 2.8166 34 1 3.9333 -7.8695 1.4632 35 1 5.5138 -4.7183 -1.3533 36 1 4.8861 -5.0200 0.3248 37 1 3.4828 -1.6619 -4.3089 There are 56 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 56 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_40_16969938_15065232.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 12:53:28 Heat of formation + Delta-G solvation = 19.981424 kcal Electronic energy + Delta-G solvation = -25035.049369 eV Core-core repulsion = 21227.815456 eV Total energy + Delta-G solvation = -3807.233914 eV No. of doubly occupied orbitals = 56 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 342.054 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -43.04161 -40.16863 -39.49933 -38.37676 -37.64770 -37.03206 -34.12821 -33.37742 -31.82582 -30.36930 -27.22097 -26.71163 -26.06419 -24.92417 -22.62211 -21.76093 -21.46251 -20.76365 -20.25203 -19.26105 -18.99324 -18.40889 -17.89037 -17.64143 -17.02369 -16.41722 -16.29591 -15.93106 -15.70450 -15.55058 -15.28478 -14.92712 -14.59402 -14.54609 -14.23953 -14.16028 -13.95524 -13.81924 -13.44886 -13.38882 -13.33578 -13.22160 -12.95147 -12.51043 -12.34244 -12.20157 -11.90145 -11.56930 -11.46486 -11.00118 -10.97297 -10.85457 -10.53523 -10.19119 -9.80158 -9.30503 -5.10529 -0.80203 -0.45108 0.36257 0.61736 0.96261 1.13920 1.20815 1.50298 1.85444 2.01549 2.16443 2.26160 2.67575 3.18033 3.31168 3.35407 3.45094 3.59915 3.64716 3.84177 3.93022 4.04620 4.14967 4.25828 4.31100 4.48874 4.56282 4.61619 4.67801 4.70393 4.71187 4.91230 4.97178 4.99677 5.07374 5.08446 5.17030 5.39885 5.82512 6.00664 6.35166 6.54085 7.17944 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.540 6.540 2 C -0.038 4.038 3 Si 0.719 3.281 4 C -0.230 4.230 5 C -0.056 4.056 6 C -0.693 4.693 7 S 2.728 3.272 8 O -0.979 6.979 9 O -0.985 6.985 10 N -1.086 6.086 11 C 0.129 3.871 12 H 0.121 0.879 13 C -0.148 4.148 14 C -0.031 4.031 15 H 0.117 0.883 16 C 0.212 3.788 17 N -0.534 5.534 18 C -0.065 4.065 19 C -0.045 4.045 20 N -0.557 5.557 21 C -0.123 4.123 22 C -0.085 4.085 23 S 0.184 5.816 24 H 0.388 0.612 25 H 0.144 0.856 26 H -0.264 1.264 27 H -0.274 1.274 28 H 0.157 0.843 29 H 0.430 0.570 30 H 0.108 0.892 31 H 0.085 0.915 32 H 0.175 0.825 33 H 0.208 0.792 34 H 0.432 0.568 35 H 0.091 0.909 36 H 0.103 0.897 37 H 0.202 0.798 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.526 2.261 4.317 5.489 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.349 6.349 2 C -0.149 4.149 3 Si 0.621 3.379 4 C -0.348 4.348 5 C -0.085 4.085 6 C -0.794 4.794 7 S 2.817 3.183 8 O -0.969 6.969 9 O -0.975 6.975 10 N -0.847 5.847 11 C 0.021 3.979 12 H 0.139 0.861 13 C -0.188 4.188 14 C -0.051 4.051 15 H 0.135 0.865 16 C -0.053 4.053 17 N -0.254 5.254 18 C -0.212 4.212 19 C -0.179 4.179 20 N -0.162 5.162 21 C -0.163 4.163 22 C -0.225 4.225 23 S 0.448 5.552 24 H 0.238 0.762 25 H 0.162 0.838 26 H -0.190 1.190 27 H -0.199 1.199 28 H 0.175 0.825 29 H 0.267 0.733 30 H 0.126 0.874 31 H 0.103 0.897 32 H 0.192 0.808 33 H 0.225 0.775 34 H 0.273 0.727 35 H 0.110 0.890 36 H 0.121 0.879 37 H 0.219 0.781 Dipole moment (debyes) X Y Z Total from point charges 2.844 4.154 3.595 6.187 hybrid contribution -1.848 -1.436 0.525 2.399 sum 0.997 2.718 4.121 5.036 Atomic orbital electron populations 1.86614 1.17918 1.80206 1.50121 1.24585 0.83343 1.10440 0.96565 0.94574 0.90442 0.73297 0.79601 1.25095 1.07923 0.98739 1.03074 1.19687 0.98562 0.95633 0.94613 1.29809 1.15452 1.25432 1.08700 1.00773 0.72734 0.72888 0.71946 1.93576 1.45191 1.79025 1.79142 1.93579 1.85980 1.87408 1.30556 1.55108 1.47746 1.66775 1.15058 1.21679 0.99006 0.97702 0.79476 0.86107 1.23594 0.94117 0.97187 1.03879 1.21168 0.94681 0.93698 0.95597 0.86501 1.23327 0.89918 1.01749 0.90281 1.70182 1.15142 1.15693 1.24424 1.22722 1.00614 1.04825 0.92993 1.23257 0.89824 1.03031 1.01804 1.43263 1.14815 1.40690 1.17423 1.23391 0.96173 0.93513 1.03217 1.26222 0.97560 0.95973 1.02699 1.84389 1.45481 1.12094 1.13219 0.76246 0.83818 1.18971 1.19909 0.82505 0.73251 0.87421 0.89675 0.80778 0.77543 0.72672 0.89032 0.87861 0.78105 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.54 0.06 12.86 -148.98 -1.92 -1.86 16 2 C -0.04 0.15 2.96 71.23 0.21 0.36 16 3 Si 0.72 -3.03 30.97 68.60 2.12 -0.90 16 4 C -0.23 0.71 5.72 24.59 0.14 0.85 16 5 C -0.06 0.09 9.47 21.22 0.20 0.29 16 6 C -0.69 1.09 5.86 21.22 0.12 1.21 16 7 S 2.73 1.67 5.74 -56.49 -0.32 1.34 16 8 O -0.98 -6.86 17.40 -128.00 -2.23 -9.09 16 9 O -0.98 -6.50 17.64 -128.00 -2.26 -8.76 16 10 N -1.09 6.41 5.73 -167.19 -0.96 5.45 16 11 C 0.13 -0.99 4.44 45.52 0.20 -0.79 16 12 H 0.12 -1.20 7.95 -2.39 -0.02 -1.22 16 13 C -0.15 1.07 7.35 31.12 0.23 1.30 16 14 C -0.03 0.13 4.11 -11.01 -0.05 0.09 16 15 H 0.12 -0.43 8.10 -2.39 -0.02 -0.45 16 16 C 0.21 0.30 7.36 138.13 1.02 1.32 16 17 N -0.53 -4.36 11.25 -188.13 -2.12 -6.47 16 18 C -0.06 -0.28 11.87 83.52 0.99 0.71 16 19 C -0.04 0.07 12.04 83.09 1.00 1.07 16 20 N -0.56 1.85 5.94 -186.27 -1.11 0.74 16 21 C -0.12 0.93 7.41 31.12 0.23 1.16 16 22 C -0.09 0.31 10.70 66.72 0.71 1.02 16 23 S 0.18 -0.87 20.58 -56.49 -1.16 -2.03 16 24 H 0.39 -1.97 8.70 -74.06 -0.64 -2.61 16 25 H 0.14 -1.01 7.96 -2.39 -0.02 -1.03 16 26 H -0.26 0.08 7.11 99.48 0.71 0.78 16 27 H -0.27 -0.69 7.11 99.48 0.71 0.01 16 28 H 0.16 -0.33 7.97 -2.91 -0.02 -0.36 16 29 H 0.43 -3.79 8.78 -96.74 -0.85 -4.64 16 30 H 0.11 -1.19 6.64 -2.39 -0.02 -1.20 16 31 H 0.08 -0.48 8.14 -2.39 -0.02 -0.50 16 32 H 0.17 0.24 8.06 -2.91 -0.02 0.21 16 33 H 0.21 -1.81 8.06 -2.91 -0.02 -1.83 16 34 H 0.43 -4.24 7.53 -92.71 -0.70 -4.94 16 35 H 0.09 -0.72 8.14 -2.39 -0.02 -0.73 16 36 H 0.10 -0.87 8.09 -2.38 -0.02 -0.89 16 37 H 0.20 -1.49 8.00 -2.91 -0.02 -1.51 16 Total: 0.00 -27.96 343.75 -5.93 -33.89 By element: Atomic # 1 Polarization: -19.90 SS G_CDS: -1.00 Total: -20.90 kcal Atomic # 6 Polarization: 3.58 SS G_CDS: 5.02 Total: 8.59 kcal Atomic # 7 Polarization: 3.90 SS G_CDS: -4.18 Total: -0.28 kcal Atomic # 8 Polarization: -13.31 SS G_CDS: -6.40 Total: -19.71 kcal Atomic # 14 Polarization: -3.03 SS G_CDS: 2.12 Total: -0.90 kcal Atomic # 16 Polarization: 0.80 SS G_CDS: -1.49 Total: -0.69 kcal Total: -27.96 -5.93 -33.89 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_40_16969938_15065232.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.873 kcal (2) G-P(sol) polarization free energy of solvation -27.960 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.913 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.931 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.891 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.981 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds