Wall clock time and date at job start Tue Mar 9 2021 12:53:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46495 * 1 3 3 C 1.46506 * 120.00010 * 2 1 4 4 H 1.09004 * 112.84721 * 170.33350 * 3 2 1 5 5 C 1.53777 * 113.61502 * 301.53562 * 3 2 1 6 6 C 1.53776 * 87.08491 * 139.98005 * 5 3 2 7 7 H 1.09004 * 113.61778 * 219.93555 * 6 5 3 8 8 O 1.42896 * 113.62048 * 89.10768 * 6 5 3 9 9 C 1.53784 * 113.60944 * 39.14125 * 3 2 1 10 10 S 1.65598 * 119.99995 * 180.02562 * 2 1 3 11 11 O 1.42099 * 106.40490 * 156.45980 * 10 2 1 12 12 O 1.42095 * 106.40535 * 23.53471 * 10 2 1 13 13 C 1.76199 * 107.21510 * 269.99548 * 10 2 1 14 14 C 1.33392 * 125.20197 * 89.99884 * 13 10 2 15 15 C 1.50697 * 122.54122 * 0.02898 * 14 13 10 16 16 O 1.42905 * 109.46996 * 74.72912 * 15 14 13 17 17 Si 1.86301 * 109.47403 * 194.73175 * 15 14 13 18 18 C 1.38428 * 114.92120 * 179.75494 * 14 13 10 19 19 C 1.33394 * 114.92102 * 0.25011 * 18 14 13 20 20 S 1.75882 * 109.59352 * 0.02562 * 19 18 14 21 21 H 1.08998 * 109.47200 * 269.99940 * 1 2 3 22 22 H 1.09004 * 109.47166 * 29.99545 * 1 2 3 23 23 H 1.09002 * 109.47434 * 149.99675 * 1 2 3 24 24 H 1.09007 * 113.61072 * 254.52649 * 5 3 2 25 25 H 1.08997 * 113.62003 * 25.34041 * 5 3 2 26 26 H 0.96694 * 114.00487 * 180.02562 * 8 6 5 27 27 H 1.08998 * 113.61643 * 334.56100 * 9 3 2 28 28 H 1.09001 * 113.61643 * 105.47241 * 9 3 2 29 29 H 1.09001 * 109.46613 * 314.73323 * 15 14 13 30 30 H 0.96696 * 114.00036 * 60.00342 * 16 15 14 31 31 H 1.48497 * 109.99842 * 179.97438 * 17 15 14 32 32 H 1.48498 * 109.99736 * 301.31722 * 17 15 14 33 33 H 1.08000 * 122.53655 * 180.27218 * 18 14 13 34 34 H 1.07998 * 125.20226 * 180.02562 * 19 18 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1975 1.2688 0.0000 4 1 3.2667 1.1402 0.1687 5 6 1.8673 2.1707 -1.2009 6 6 1.9073 3.3558 -0.2217 7 1 1.1290 4.0974 -0.4016 8 8 3.2050 3.9368 -0.0788 9 6 1.5590 2.3486 0.8895 10 16 2.2929 -1.4341 -0.0006 11 8 3.5759 -1.1566 -0.5449 12 8 1.4113 -2.4063 -0.5454 13 6 2.5538 -1.8864 1.6822 14 6 1.7237 -2.6288 2.4165 15 6 0.4316 -3.1801 1.8710 16 8 0.7122 -4.2780 1.0002 17 14 -0.6390 -3.7628 3.2799 18 6 2.1418 -2.8593 3.7158 19 6 3.3090 -2.2998 4.0383 20 16 3.9465 -1.4246 2.6522 21 1 -0.3633 0.0000 1.0276 22 1 -0.3634 0.8900 -0.5138 23 1 -0.3634 -0.8900 -0.5139 24 1 2.6545 2.2001 -1.9544 25 1 0.8808 1.9874 -1.6266 26 1 3.2366 4.6824 0.5361 27 1 0.4873 2.2150 1.0373 28 1 2.0976 2.5215 1.8212 29 1 -0.0905 -2.4005 1.3161 30 1 1.1769 -5.0103 1.4277 31 1 -1.9166 -4.3082 2.7550 32 1 0.0744 -4.8033 4.0632 33 1 1.5668 -3.4479 4.4153 34 1 3.7891 -2.3731 5.0029 There are 50 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 50 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_40_16977508_13652106.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 12:53:40 Heat of formation + Delta-G solvation = -72.121801 kcal Electronic energy + Delta-G solvation = -22368.829733 eV Core-core repulsion = 18909.987594 eV Total energy + Delta-G solvation = -3458.842139 eV No. of doubly occupied orbitals = 50 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 306.047 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -40.65667 -40.11722 -38.38078 -37.17613 -37.00858 -36.87999 -34.10048 -31.42689 -28.17719 -27.77847 -26.71650 -24.66939 -24.29971 -21.42087 -20.59674 -19.91732 -19.49013 -18.83984 -18.36397 -18.05694 -17.15743 -16.66912 -16.33666 -16.10103 -15.81565 -15.74715 -15.26436 -15.17547 -14.36388 -14.29105 -14.10602 -13.94440 -13.65138 -13.55720 -13.52867 -13.24719 -12.97035 -12.86612 -12.76040 -12.54784 -12.47168 -12.23918 -12.20140 -11.54701 -11.26832 -10.72399 -10.64538 -10.44010 -10.04062 -9.69315 -4.96198 -0.88138 -0.59428 0.28393 0.70279 1.21556 1.23720 1.58500 1.87341 1.96112 2.56491 3.15140 3.27881 3.38685 3.50219 3.54422 3.63234 3.84469 3.86481 4.06190 4.10007 4.19024 4.38440 4.52430 4.64870 4.69250 4.71708 4.83042 4.87336 4.88337 4.96162 5.03955 5.05650 5.10745 5.36757 5.54753 6.49870 6.93108 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.063 3.937 2 N -0.980 5.980 3 C 0.118 3.882 4 H 0.101 0.899 5 C -0.154 4.154 6 C 0.083 3.917 7 H 0.099 0.901 8 O -0.576 6.576 9 C -0.162 4.162 10 S 2.705 3.295 11 O -0.993 6.993 12 O -0.948 6.948 13 C -0.792 4.792 14 C 0.011 3.989 15 C -0.102 4.102 16 O -0.521 6.521 17 Si 0.791 3.209 18 C -0.175 4.175 19 C -0.145 4.145 20 S 0.200 5.800 21 H 0.085 0.915 22 H 0.104 0.896 23 H 0.077 0.923 24 H 0.062 0.938 25 H 0.119 0.881 26 H 0.400 0.600 27 H 0.121 0.879 28 H 0.084 0.916 29 H 0.122 0.878 30 H 0.379 0.621 31 H -0.296 1.296 32 H -0.267 1.267 33 H 0.178 0.822 34 H 0.210 0.790 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.235 5.357 8.570 10.958 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.081 4.081 2 N -0.819 5.819 3 C 0.012 3.988 4 H 0.118 0.882 5 C -0.193 4.193 6 C 0.023 3.977 7 H 0.117 0.883 8 O -0.385 6.385 9 C -0.201 4.201 10 S 2.795 3.205 11 O -0.984 6.984 12 O -0.938 6.938 13 C -0.995 4.995 14 C -0.007 4.007 15 C -0.211 4.211 16 O -0.327 6.327 17 Si 0.693 3.307 18 C -0.204 4.204 19 C -0.282 4.282 20 S 0.466 5.534 21 H 0.104 0.896 22 H 0.122 0.878 23 H 0.095 0.905 24 H 0.081 0.919 25 H 0.138 0.862 26 H 0.251 0.749 27 H 0.139 0.861 28 H 0.103 0.897 29 H 0.139 0.861 30 H 0.227 0.773 31 H -0.223 1.223 32 H -0.193 1.193 33 H 0.194 0.806 34 H 0.227 0.773 Dipole moment (debyes) X Y Z Total from point charges -3.147 5.005 7.094 9.235 hybrid contribution -0.226 -1.378 0.475 1.475 sum -3.374 3.628 7.568 9.045 Atomic orbital electron populations 1.21998 0.76337 1.05339 1.04390 1.57293 1.16221 1.19712 1.88706 1.22576 0.96078 0.81359 0.98758 0.88153 1.23672 1.03892 0.94519 0.97232 1.22617 0.85539 0.93806 0.95729 0.88338 1.86453 1.30089 1.52947 1.68993 1.24114 1.03466 0.94179 0.98373 1.01401 0.72850 0.72971 0.73235 1.93551 1.42479 1.85266 1.77073 1.93657 1.65391 1.58743 1.76056 1.35621 1.10468 1.23074 1.30344 1.19328 0.95771 0.92350 0.93300 1.25628 0.97408 0.93513 1.04601 1.86889 1.79561 1.28627 1.37642 0.94155 0.75014 0.85522 0.76052 1.20537 0.98492 1.05382 0.96011 1.26605 0.98632 0.99434 1.03559 1.84490 1.18378 1.49079 1.01418 0.89605 0.87758 0.90468 0.91948 0.86243 0.74906 0.86133 0.89687 0.86055 0.77350 1.22325 1.19262 0.80551 0.77272 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 -0.31 8.56 127.77 1.09 0.79 16 2 N -0.98 -1.40 3.39 -513.75 -1.74 -3.15 16 3 C 0.12 0.13 4.07 45.52 0.19 0.31 16 4 H 0.10 0.55 7.37 -2.39 -0.02 0.53 16 5 C -0.15 0.02 7.44 31.12 0.23 0.25 16 6 C 0.08 -0.32 5.28 31.18 0.16 -0.16 16 7 H 0.10 -0.81 8.14 -2.39 -0.02 -0.83 16 8 O -0.58 0.26 13.59 -148.98 -2.02 -1.77 16 9 C -0.16 0.93 7.37 31.18 0.23 1.16 16 10 S 2.71 24.21 5.62 -56.49 -0.32 23.89 16 11 O -0.99 -15.98 16.70 -128.00 -2.14 -18.12 16 12 O -0.95 -12.63 12.88 -119.50 -1.54 -14.17 16 13 C -0.79 -3.64 6.57 66.72 0.44 -3.20 16 14 C 0.01 0.01 5.13 -20.92 -0.11 -0.10 16 15 C -0.10 -0.12 1.79 71.23 0.13 0.00 16 16 O -0.52 -3.56 11.10 -128.40 -1.43 -4.98 16 17 Si 0.79 -3.08 30.46 68.60 2.09 -0.99 16 18 C -0.18 0.64 8.74 21.22 0.19 0.83 16 19 C -0.14 0.66 11.23 66.72 0.75 1.41 16 20 S 0.20 0.32 23.22 -56.49 -1.31 -0.99 16 21 H 0.09 -0.86 8.14 -2.39 -0.02 -0.88 16 22 H 0.10 -0.97 6.33 -2.39 -0.02 -0.98 16 23 H 0.08 -0.17 6.99 -2.39 -0.02 -0.18 16 24 H 0.06 0.28 8.14 -2.38 -0.02 0.26 16 25 H 0.12 -0.51 6.82 -2.39 -0.02 -0.53 16 26 H 0.40 -3.76 9.12 -74.06 -0.68 -4.43 16 27 H 0.12 -1.22 6.81 -2.39 -0.02 -1.23 16 28 H 0.08 -0.53 8.14 -2.39 -0.02 -0.54 16 29 H 0.12 0.00 6.44 -2.39 -0.02 -0.02 16 30 H 0.38 0.01 8.70 -74.06 -0.64 -0.63 16 31 H -0.30 -1.11 7.11 99.48 0.71 -0.40 16 32 H -0.27 0.57 6.80 99.48 0.68 1.24 16 33 H 0.18 -1.48 5.53 -2.91 -0.02 -1.50 16 34 H 0.21 -2.41 8.06 -2.91 -0.02 -2.43 16 Total: 0.00 -26.28 301.81 -5.26 -31.54 By element: Atomic # 1 Polarization: -12.42 SS G_CDS: -0.15 Total: -12.57 kcal Atomic # 6 Polarization: -2.00 SS G_CDS: 3.30 Total: 1.30 kcal Atomic # 7 Polarization: -1.40 SS G_CDS: -1.74 Total: -3.15 kcal Atomic # 8 Polarization: -31.91 SS G_CDS: -7.13 Total: -39.04 kcal Atomic # 14 Polarization: -3.08 SS G_CDS: 2.09 Total: -0.99 kcal Atomic # 16 Polarization: 24.53 SS G_CDS: -1.63 Total: 22.90 kcal Total: -26.28 -5.26 -31.54 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_40_16977508_13652106.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.579 kcal (2) G-P(sol) polarization free energy of solvation -26.280 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.860 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.262 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -31.542 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.122 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds