Wall clock time and date at job start Tue Mar 9 2021 12:53:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46508 * 1 3 3 C 1.46498 * 120.00137 * 2 1 4 4 H 1.08994 * 112.84972 * 191.19539 * 3 2 1 5 5 C 1.53785 * 113.61309 * 322.50415 * 3 2 1 6 6 C 1.53786 * 87.08038 * 89.11518 * 5 3 2 7 7 H 1.09001 * 113.68944 * 270.86973 * 6 5 3 8 8 O 1.42901 * 113.61078 * 139.98072 * 6 5 3 9 9 C 1.53780 * 87.08231 * 25.42927 * 6 5 3 10 10 S 1.65599 * 119.99903 * 180.02562 * 2 1 3 11 11 O 1.42104 * 106.40192 * 336.46123 * 10 2 1 12 12 O 1.42094 * 106.40176 * 203.53949 * 10 2 1 13 13 C 1.76204 * 107.21990 * 89.99863 * 10 2 1 14 14 C 1.33382 * 122.54046 * 270.02557 * 13 10 2 15 15 S 1.75880 * 109.59500 * 179.73712 * 14 13 10 16 16 C 1.75887 * 90.96975 * 0.30852 * 15 14 13 17 17 C 1.50699 * 125.20415 * 179.97438 * 16 15 14 18 18 O 1.42905 * 109.46972 * 244.69947 * 17 16 15 19 19 Si 1.86295 * 109.47097 * 4.69587 * 17 16 15 20 20 C 1.33388 * 109.58920 * 359.69205 * 16 15 14 21 21 H 1.08994 * 109.46741 * 269.99600 * 1 2 3 22 22 H 1.08997 * 109.46595 * 30.00197 * 1 2 3 23 23 H 1.08999 * 109.46814 * 150.00107 * 1 2 3 24 24 H 1.08999 * 113.61299 * 203.65990 * 5 3 2 25 25 H 1.08997 * 113.61628 * 334.56541 * 5 3 2 26 26 H 0.96697 * 113.99891 * 82.50534 * 8 6 5 27 27 H 1.09001 * 113.61882 * 220.01906 * 9 6 5 28 28 H 1.09001 * 113.61530 * 89.11471 * 9 6 5 29 29 H 1.08002 * 125.20221 * 0.02562 * 14 13 10 30 30 H 1.09000 * 109.47247 * 124.69882 * 17 16 15 31 31 H 0.96696 * 114.00036 * 179.97438 * 18 17 16 32 32 H 1.48504 * 110.00018 * 178.68145 * 19 17 16 33 33 H 1.48496 * 110.00262 * 300.00047 * 19 17 16 34 34 H 1.08005 * 122.53975 * 180.22329 * 20 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1976 1.2687 0.0000 4 1 3.2625 1.1426 -0.1950 5 6 1.5374 2.3612 -0.8577 6 6 0.7441 2.7579 0.3986 7 1 -0.1986 2.2219 0.5086 8 8 0.6021 4.1702 0.5635 9 6 1.8954 2.1544 1.2203 10 16 2.2931 -1.4341 -0.0006 11 8 1.4113 -2.4068 0.5433 12 8 3.5759 -1.1570 0.5439 13 6 2.5538 -1.8852 -1.6839 14 6 1.6860 -2.6306 -2.3696 15 16 2.2773 -2.8662 -4.0092 16 6 3.7169 -1.9186 -3.6581 17 6 4.8253 -1.6273 -4.6367 18 8 6.0327 -2.2453 -4.1867 19 14 4.3685 -2.3032 -6.3115 20 6 3.6746 -1.4923 -2.3949 21 1 -0.3632 -0.0001 1.0276 22 1 -0.3632 0.8900 -0.5139 23 1 -0.3633 -0.8900 -0.5138 24 1 2.2322 3.1299 -1.1962 25 1 0.9147 1.9685 -1.6615 26 1 -0.1205 4.5555 0.0492 27 1 1.5617 1.5947 2.0941 28 1 2.6881 2.8665 1.4499 29 1 0.7594 -3.0249 -1.9793 30 1 4.9733 -0.5497 -4.7077 31 1 6.7901 -2.0995 -4.7699 32 1 5.4393 -1.9945 -7.2931 33 1 4.1640 -3.7716 -6.2281 34 1 4.4558 -0.8866 -1.9597 There are 50 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 50 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_40_16977508_15065232.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 12:53:46 Heat of formation + Delta-G solvation = -67.331893 kcal Electronic energy + Delta-G solvation = -21691.427417 eV Core-core repulsion = 18232.792984 eV Total energy + Delta-G solvation = -3458.634433 eV No. of doubly occupied orbitals = 50 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 306.047 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -40.97792 -39.44442 -38.29242 -37.73045 -36.94228 -36.83187 -34.08149 -32.02450 -28.48202 -27.24628 -26.85540 -24.90455 -24.28398 -21.48217 -20.95053 -19.56375 -19.14250 -18.96025 -18.65649 -18.15692 -17.79115 -17.11924 -16.37243 -16.17664 -15.79015 -15.61594 -15.31610 -14.88733 -14.40116 -14.33738 -14.17390 -14.00875 -13.88536 -13.68334 -13.27640 -13.23041 -13.11058 -12.94450 -12.91685 -12.66823 -12.64311 -12.47846 -12.16368 -11.62131 -11.44578 -10.82315 -10.74066 -10.28810 -10.15211 -9.84963 -5.23415 -0.82153 -0.49569 0.27913 0.54703 0.93053 1.11511 1.40558 1.75572 1.90433 2.69816 3.06482 3.15682 3.22085 3.34769 3.48266 3.57344 3.71240 3.74190 3.80043 3.87179 4.11761 4.23819 4.28872 4.34066 4.49377 4.59432 4.62327 4.69619 4.83517 4.83931 4.88689 4.92901 5.05121 5.14348 5.47789 6.24648 6.63719 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.079 3.921 2 N -0.981 5.981 3 C 0.125 3.875 4 H 0.118 0.882 5 C -0.177 4.177 6 C 0.068 3.932 7 H 0.090 0.910 8 O -0.559 6.559 9 C -0.138 4.138 10 S 2.707 3.293 11 O -0.948 6.948 12 O -0.944 6.944 13 C -0.686 4.686 14 C -0.088 4.088 15 S 0.167 5.833 16 C -0.182 4.182 17 C -0.036 4.036 18 O -0.530 6.530 19 Si 0.646 3.354 20 C -0.044 4.044 21 H 0.066 0.934 22 H 0.082 0.918 23 H 0.075 0.925 24 H 0.103 0.897 25 H 0.078 0.922 26 H 0.379 0.621 27 H 0.081 0.919 28 H 0.104 0.896 29 H 0.186 0.814 30 H 0.089 0.911 31 H 0.384 0.616 32 H -0.236 1.236 33 H -0.235 1.235 34 H 0.155 0.845 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.934 3.758 -5.828 7.973 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 N -0.818 5.818 3 C 0.018 3.982 4 H 0.136 0.864 5 C -0.216 4.216 6 C 0.010 3.990 7 H 0.107 0.893 8 O -0.365 6.365 9 C -0.177 4.177 10 S 2.795 3.205 11 O -0.939 6.939 12 O -0.934 6.934 13 C -0.785 4.785 14 C -0.227 4.227 15 S 0.431 5.569 16 C -0.299 4.299 17 C -0.147 4.147 18 O -0.339 6.339 19 Si 0.545 3.455 20 C -0.072 4.072 21 H 0.085 0.915 22 H 0.100 0.900 23 H 0.094 0.906 24 H 0.122 0.878 25 H 0.097 0.903 26 H 0.226 0.774 27 H 0.100 0.900 28 H 0.122 0.878 29 H 0.203 0.797 30 H 0.107 0.893 31 H 0.233 0.767 32 H -0.159 1.159 33 H -0.158 1.158 34 H 0.173 0.827 Dipole moment (debyes) X Y Z Total from point charges -3.871 1.673 -6.198 7.497 hybrid contribution 1.146 0.774 0.248 1.404 sum -2.725 2.447 -5.951 6.987 Atomic orbital electron populations 1.21773 0.78099 1.03635 1.03075 1.57346 1.15217 1.20433 1.88843 1.21582 0.96476 0.82466 0.97662 0.86419 1.24068 1.00946 0.98521 0.98059 1.23720 0.97763 0.81818 0.95735 0.89275 1.86546 1.57198 1.21036 1.71690 1.23484 0.98610 0.98020 0.97616 1.01811 0.73230 0.72175 0.73277 1.93607 1.66190 1.58206 1.75856 1.93602 1.39875 1.84153 1.75793 1.30080 1.04282 1.15827 1.28357 1.25893 1.02285 0.97496 0.97058 1.84368 1.13612 1.48625 1.10287 1.23777 1.00276 1.06710 0.99157 1.24034 0.84934 1.01020 1.04760 1.86627 1.18788 1.76994 1.51445 0.95380 0.90749 0.83783 0.75619 1.19573 0.96081 0.99481 0.92109 0.91521 0.89990 0.90591 0.87835 0.90295 0.77395 0.90046 0.87779 0.79693 0.89309 0.76714 1.15909 1.15849 0.82702 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 -0.23 8.69 59.85 0.52 0.29 16 2 N -0.98 0.90 3.39 -113.74 -0.39 0.51 16 3 C 0.12 -0.15 4.38 -67.12 -0.29 -0.44 16 4 H 0.12 -0.15 7.41 -51.93 -0.38 -0.54 16 5 C -0.18 0.46 7.13 -25.91 -0.18 0.27 16 6 C 0.07 -0.12 4.54 -25.92 -0.12 -0.23 16 7 H 0.09 -0.28 5.55 -51.93 -0.29 -0.57 16 8 O -0.56 0.19 13.67 -35.23 -0.48 -0.29 16 9 C -0.14 0.07 7.58 -25.92 -0.20 -0.12 16 10 S 2.71 5.09 5.70 -107.50 -0.61 4.47 16 11 O -0.95 -3.92 16.71 -57.17 -0.96 -4.87 16 12 O -0.94 -4.55 16.45 -57.17 -0.94 -5.49 16 13 C -0.69 -0.71 5.89 -41.21 -0.24 -0.95 16 14 C -0.09 0.02 10.70 29.04 0.31 0.33 16 15 S 0.17 -0.07 20.59 -107.50 -2.21 -2.28 16 16 C -0.18 -0.15 5.73 -36.00 -0.21 -0.36 16 17 C -0.04 0.02 2.95 36.01 0.11 0.13 16 18 O -0.53 -0.43 12.86 -35.23 -0.45 -0.88 16 19 Si 0.65 -0.96 30.98 -169.99 -5.27 -6.22 16 20 C -0.04 -0.06 9.59 -41.21 -0.40 -0.46 16 21 H 0.07 -0.19 8.14 -51.93 -0.42 -0.62 16 22 H 0.08 -0.39 4.83 -51.93 -0.25 -0.64 16 23 H 0.08 -0.29 7.79 -51.93 -0.40 -0.70 16 24 H 0.10 -0.26 8.14 -51.93 -0.42 -0.68 16 25 H 0.08 -0.28 7.36 -51.93 -0.38 -0.67 16 26 H 0.38 -1.65 9.12 45.56 0.42 -1.24 16 27 H 0.08 -0.02 8.14 -51.93 -0.42 -0.44 16 28 H 0.10 -0.03 8.14 -51.93 -0.42 -0.45 16 29 H 0.19 -0.48 8.00 -52.49 -0.42 -0.90 16 30 H 0.09 -0.25 7.96 -51.93 -0.41 -0.67 16 31 H 0.38 -1.34 8.74 45.56 0.40 -0.94 16 32 H -0.24 0.02 7.11 56.52 0.40 0.42 16 33 H -0.23 -0.36 7.11 56.52 0.40 0.04 16 34 H 0.16 0.14 7.96 -52.48 -0.42 -0.27 16 LS Contribution 309.05 15.07 4.66 4.66 Total: 0.00 -10.40 309.05 -10.39 -20.78 By element: Atomic # 1 Polarization: -5.82 SS G_CDS: -3.04 Total: -8.86 kcal Atomic # 6 Polarization: -0.84 SS G_CDS: -0.70 Total: -1.54 kcal Atomic # 7 Polarization: 0.90 SS G_CDS: -0.39 Total: 0.51 kcal Atomic # 8 Polarization: -8.70 SS G_CDS: -2.83 Total: -11.53 kcal Atomic # 14 Polarization: -0.96 SS G_CDS: -5.27 Total: -6.22 kcal Atomic # 16 Polarization: 5.02 SS G_CDS: -2.83 Total: 2.19 kcal Total LS contribution 4.66 Total: 4.66 kcal Total: -10.40 -10.39 -20.78 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_40_16977508_15065232.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -46.548 kcal (2) G-P(sol) polarization free energy of solvation -10.396 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.944 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.388 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -20.784 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.332 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds