Wall clock time and date at job start Tue Mar 9 2021 12:53:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46508 * 1 3 3 C 1.46498 * 120.00137 * 2 1 4 4 H 1.08994 * 112.84972 * 191.19539 * 3 2 1 5 5 C 1.53785 * 113.61309 * 322.50415 * 3 2 1 6 6 C 1.53786 * 87.08038 * 89.11518 * 5 3 2 7 7 H 1.09001 * 113.68944 * 270.86973 * 6 5 3 8 8 O 1.42901 * 113.61078 * 139.98072 * 6 5 3 9 9 C 1.53780 * 87.08231 * 25.42927 * 6 5 3 10 10 S 1.65599 * 119.99903 * 180.02562 * 2 1 3 11 11 O 1.42104 * 106.40192 * 336.46123 * 10 2 1 12 12 O 1.42094 * 106.40176 * 203.53949 * 10 2 1 13 13 C 1.76204 * 107.21990 * 89.99863 * 10 2 1 14 14 C 1.33382 * 122.54046 * 270.02557 * 13 10 2 15 15 S 1.75880 * 109.59500 * 179.73712 * 14 13 10 16 16 C 1.75887 * 90.96975 * 0.30852 * 15 14 13 17 17 C 1.50699 * 125.20415 * 179.97438 * 16 15 14 18 18 O 1.42905 * 109.46972 * 244.69947 * 17 16 15 19 19 Si 1.86295 * 109.47097 * 4.69587 * 17 16 15 20 20 C 1.33388 * 109.58920 * 359.69205 * 16 15 14 21 21 H 1.08994 * 109.46741 * 269.99600 * 1 2 3 22 22 H 1.08997 * 109.46595 * 30.00197 * 1 2 3 23 23 H 1.08999 * 109.46814 * 150.00107 * 1 2 3 24 24 H 1.08999 * 113.61299 * 203.65990 * 5 3 2 25 25 H 1.08997 * 113.61628 * 334.56541 * 5 3 2 26 26 H 0.96697 * 113.99891 * 82.50534 * 8 6 5 27 27 H 1.09001 * 113.61882 * 220.01906 * 9 6 5 28 28 H 1.09001 * 113.61530 * 89.11471 * 9 6 5 29 29 H 1.08002 * 125.20221 * 0.02562 * 14 13 10 30 30 H 1.09000 * 109.47247 * 124.69882 * 17 16 15 31 31 H 0.96696 * 114.00036 * 179.97438 * 18 17 16 32 32 H 1.48504 * 110.00018 * 178.68145 * 19 17 16 33 33 H 1.48496 * 110.00262 * 300.00047 * 19 17 16 34 34 H 1.08005 * 122.53975 * 180.22329 * 20 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1976 1.2687 0.0000 4 1 3.2625 1.1426 -0.1950 5 6 1.5374 2.3612 -0.8577 6 6 0.7441 2.7579 0.3986 7 1 -0.1986 2.2219 0.5086 8 8 0.6021 4.1702 0.5635 9 6 1.8954 2.1544 1.2203 10 16 2.2931 -1.4341 -0.0006 11 8 1.4113 -2.4068 0.5433 12 8 3.5759 -1.1570 0.5439 13 6 2.5538 -1.8852 -1.6839 14 6 1.6860 -2.6306 -2.3696 15 16 2.2773 -2.8662 -4.0092 16 6 3.7169 -1.9186 -3.6581 17 6 4.8253 -1.6273 -4.6367 18 8 6.0327 -2.2453 -4.1867 19 14 4.3685 -2.3032 -6.3115 20 6 3.6746 -1.4923 -2.3949 21 1 -0.3632 -0.0001 1.0276 22 1 -0.3632 0.8900 -0.5139 23 1 -0.3633 -0.8900 -0.5138 24 1 2.2322 3.1299 -1.1962 25 1 0.9147 1.9685 -1.6615 26 1 -0.1205 4.5555 0.0492 27 1 1.5617 1.5947 2.0941 28 1 2.6881 2.8665 1.4499 29 1 0.7594 -3.0249 -1.9793 30 1 4.9733 -0.5497 -4.7077 31 1 6.7901 -2.0995 -4.7699 32 1 5.4393 -1.9945 -7.2931 33 1 4.1640 -3.7716 -6.2281 34 1 4.4558 -0.8866 -1.9597 There are 50 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 50 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_40_16977508_15065232.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 12:53:45 Heat of formation + Delta-G solvation = -73.713436 kcal Electronic energy + Delta-G solvation = -21691.704141 eV Core-core repulsion = 18232.792984 eV Total energy + Delta-G solvation = -3458.911157 eV No. of doubly occupied orbitals = 50 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 306.047 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -40.85216 -39.44102 -38.51913 -37.71610 -37.10014 -36.80987 -33.97712 -32.01529 -28.30935 -27.21887 -26.72409 -24.91323 -24.17379 -21.44341 -20.92458 -19.57721 -19.09601 -18.95744 -18.62770 -18.14297 -17.82895 -17.05685 -16.34588 -16.19969 -15.74872 -15.58704 -15.22608 -14.76210 -14.40625 -14.32243 -14.19545 -13.98458 -13.84958 -13.59623 -13.39996 -13.30042 -13.13120 -12.93120 -12.91853 -12.73438 -12.57501 -12.48158 -12.08160 -11.64758 -11.28809 -10.68216 -10.67171 -10.24506 -10.08381 -9.83701 -5.12492 -0.90474 -0.50634 0.30492 0.55751 0.91606 1.16342 1.48686 1.82565 1.89941 2.59703 3.06054 3.27243 3.36442 3.46791 3.60752 3.64376 3.82046 3.87066 3.88791 4.05735 4.16341 4.36421 4.46751 4.59256 4.61732 4.71428 4.81400 4.86278 4.87407 4.96869 4.97884 5.02113 5.08342 5.26959 5.59532 6.48461 6.95497 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.066 3.934 2 N -0.974 5.974 3 C 0.120 3.880 4 H 0.113 0.887 5 C -0.163 4.163 6 C 0.070 3.930 7 H 0.107 0.893 8 O -0.582 6.582 9 C -0.151 4.151 10 S 2.719 3.281 11 O -0.975 6.975 12 O -0.982 6.982 13 C -0.693 4.693 14 C -0.087 4.087 15 S 0.188 5.812 16 C -0.195 4.195 17 C -0.047 4.047 18 O -0.556 6.556 19 Si 0.719 3.281 20 C -0.059 4.059 21 H 0.066 0.934 22 H 0.105 0.895 23 H 0.087 0.913 24 H 0.103 0.897 25 H 0.096 0.904 26 H 0.395 0.605 27 H 0.073 0.927 28 H 0.096 0.904 29 H 0.208 0.792 30 H 0.113 0.887 31 H 0.400 0.600 32 H -0.253 1.253 33 H -0.278 1.278 34 H 0.152 0.848 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.035 4.293 -7.070 9.684 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 N -0.812 5.812 3 C 0.013 3.987 4 H 0.131 0.869 5 C -0.202 4.202 6 C 0.012 3.988 7 H 0.124 0.876 8 O -0.390 6.390 9 C -0.191 4.191 10 S 2.810 3.190 11 O -0.966 6.966 12 O -0.972 6.972 13 C -0.794 4.794 14 C -0.226 4.226 15 S 0.452 5.548 16 C -0.313 4.313 17 C -0.158 4.158 18 O -0.367 6.367 19 Si 0.621 3.379 20 C -0.088 4.088 21 H 0.084 0.916 22 H 0.123 0.877 23 H 0.106 0.894 24 H 0.122 0.878 25 H 0.115 0.885 26 H 0.245 0.755 27 H 0.092 0.908 28 H 0.114 0.886 29 H 0.224 0.776 30 H 0.131 0.869 31 H 0.251 0.749 32 H -0.177 1.177 33 H -0.205 1.205 34 H 0.169 0.831 Dipole moment (debyes) X Y Z Total from point charges -4.977 2.236 -7.427 9.216 hybrid contribution 1.492 0.592 0.612 1.718 sum -3.485 2.828 -6.816 8.160 Atomic orbital electron populations 1.22069 0.76620 1.05413 1.03707 1.57087 1.16000 1.19397 1.88737 1.21649 0.96579 0.82502 0.97958 0.86912 1.23981 1.00695 0.97533 0.98003 1.23789 0.98027 0.81487 0.95520 0.87585 1.86499 1.58347 1.21737 1.72442 1.23563 0.99356 0.98313 0.97869 1.01097 0.72278 0.72274 0.73388 1.93563 1.66560 1.59558 1.76870 1.93548 1.41835 1.84778 1.77075 1.29864 1.04873 1.17011 1.27664 1.26234 1.02741 0.96503 0.97119 1.84293 1.12779 1.47872 1.09866 1.24076 1.01194 1.06666 0.99349 1.24327 0.84228 1.02596 1.04660 1.86578 1.19913 1.77476 1.52745 0.94582 0.89207 0.80320 0.73809 1.19655 0.96355 1.00133 0.92613 0.91567 0.87665 0.89411 0.87832 0.88541 0.75483 0.90807 0.88593 0.77556 0.86923 0.74871 1.17722 1.20459 0.83072 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 -0.44 8.69 127.77 1.11 0.67 16 2 N -0.97 1.58 3.39 -513.75 -1.74 -0.16 16 3 C 0.12 -0.22 4.38 45.52 0.20 -0.03 16 4 H 0.11 -0.13 7.41 -2.39 -0.02 -0.15 16 5 C -0.16 0.97 7.13 31.12 0.22 1.19 16 6 C 0.07 -0.28 4.54 31.12 0.14 -0.14 16 7 H 0.11 -0.82 5.55 -2.39 -0.01 -0.83 16 8 O -0.58 0.69 13.67 -148.98 -2.04 -1.35 16 9 C -0.15 0.03 7.58 31.12 0.24 0.26 16 10 S 2.72 13.04 5.70 -56.49 -0.32 12.72 16 11 O -0.98 -8.89 16.71 -128.00 -2.14 -11.03 16 12 O -0.98 -11.45 16.45 -128.00 -2.11 -13.55 16 13 C -0.69 -1.68 5.89 21.21 0.12 -1.55 16 14 C -0.09 0.08 10.70 66.72 0.71 0.80 16 15 S 0.19 -0.25 20.59 -56.49 -1.16 -1.41 16 16 C -0.20 -0.31 5.73 24.59 0.14 -0.17 16 17 C -0.05 0.08 2.95 71.24 0.21 0.29 16 18 O -0.56 -1.00 12.86 -148.98 -1.92 -2.91 16 19 Si 0.72 -2.39 30.98 68.60 2.13 -0.27 16 20 C -0.06 -0.20 9.59 21.21 0.20 0.00 16 21 H 0.07 -0.41 8.14 -2.39 -0.02 -0.43 16 22 H 0.11 -1.20 4.83 -2.39 -0.01 -1.21 16 23 H 0.09 -0.77 7.79 -2.39 -0.02 -0.79 16 24 H 0.10 -0.58 8.14 -2.39 -0.02 -0.60 16 25 H 0.10 -0.89 7.36 -2.39 -0.02 -0.91 16 26 H 0.40 -3.82 9.12 -74.06 -0.68 -4.49 16 27 H 0.07 0.07 8.14 -2.39 -0.02 0.05 16 28 H 0.10 0.10 8.14 -2.39 -0.02 0.08 16 29 H 0.21 -1.29 8.00 -2.91 -0.02 -1.31 16 30 H 0.11 -0.76 7.96 -2.39 -0.02 -0.78 16 31 H 0.40 -2.78 8.74 -74.06 -0.65 -3.42 16 32 H -0.25 0.17 7.11 99.48 0.71 0.88 16 33 H -0.28 -1.05 7.11 99.48 0.71 -0.34 16 34 H 0.15 0.50 7.96 -2.91 -0.02 0.48 16 Total: 0.00 -24.28 309.05 -6.13 -30.41 By element: Atomic # 1 Polarization: -13.65 SS G_CDS: -0.13 Total: -13.78 kcal Atomic # 6 Polarization: -1.97 SS G_CDS: 3.30 Total: 1.33 kcal Atomic # 7 Polarization: 1.58 SS G_CDS: -1.74 Total: -0.16 kcal Atomic # 8 Polarization: -20.64 SS G_CDS: -8.20 Total: -28.84 kcal Atomic # 14 Polarization: -2.39 SS G_CDS: 2.13 Total: -0.27 kcal Atomic # 16 Polarization: 12.79 SS G_CDS: -1.49 Total: 11.31 kcal Total: -24.28 -6.13 -30.41 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_40_16977508_15065232.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.307 kcal (2) G-P(sol) polarization free energy of solvation -24.278 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.585 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.128 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -30.407 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.713 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds