Wall clock time and date at job start Tue Mar 9 2021 12:59:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46899 * 1 3 3 H 1.00899 * 109.47168 * 2 1 4 4 C 1.46899 * 109.46889 * 119.99922 * 2 1 3 5 5 C 1.46897 * 109.47309 * 239.99802 * 2 1 3 6 6 C 1.52992 * 109.47438 * 175.00239 * 5 2 1 7 7 H 1.09002 * 109.47103 * 54.99785 * 6 5 2 8 8 C 1.52997 * 109.47482 * 175.00032 * 6 5 2 9 9 C 1.53000 * 109.47060 * 180.02562 * 8 6 5 10 10 C 1.53002 * 109.47233 * 299.99657 * 9 8 6 11 11 H 1.09002 * 109.47075 * 300.00932 * 10 9 8 12 12 N 1.46492 * 109.47204 * 180.02562 * 10 9 8 13 13 S 1.65603 * 120.00024 * 145.00296 * 12 10 9 14 14 O 1.42096 * 106.40250 * 178.54038 * 13 12 10 15 15 O 1.42104 * 106.40120 * 311.46096 * 13 12 10 16 16 C 1.76198 * 107.21995 * 64.99748 * 13 12 10 17 17 C 1.33392 * 122.54161 * 269.71203 * 16 13 12 18 18 S 1.75887 * 109.59437 * 179.90152 * 17 16 13 19 19 C 1.75885 * 90.96977 * 0.30241 * 18 17 16 20 20 C 1.50697 * 125.20308 * 179.79172 * 19 18 17 21 21 O 1.42904 * 109.47153 * 245.04008 * 20 19 18 22 22 Si 1.86302 * 109.47226 * 5.03944 * 20 19 18 23 23 C 1.33394 * 109.59437 * 359.83050 * 19 18 17 24 24 C 1.52997 * 109.46817 * 60.00194 * 10 9 8 25 25 C 1.52999 * 109.46961 * 295.00393 * 6 5 2 26 26 H 1.09000 * 109.47442 * 180.02562 * 1 2 3 27 27 H 1.09002 * 109.47844 * 300.00150 * 1 2 3 28 28 H 1.09003 * 109.47365 * 60.00402 * 1 2 3 29 29 H 1.09010 * 109.47149 * 300.00012 * 4 2 1 30 30 H 1.09000 * 109.47347 * 59.99613 * 4 2 1 31 31 H 1.09004 * 109.47334 * 180.02562 * 4 2 1 32 32 H 1.09001 * 109.46987 * 54.99839 * 5 2 1 33 33 H 1.09002 * 109.46916 * 295.00041 * 5 2 1 34 34 H 1.09002 * 109.47153 * 59.99783 * 8 6 5 35 35 H 1.09001 * 109.46832 * 299.99974 * 8 6 5 36 36 H 1.08992 * 109.47399 * 59.99823 * 9 8 6 37 37 H 1.09004 * 109.46724 * 180.02562 * 9 8 6 38 38 H 0.96991 * 120.00401 * 324.99881 * 12 10 9 39 39 H 1.08004 * 125.20297 * 0.02689 * 17 16 13 40 40 H 1.09000 * 109.47023 * 125.04145 * 20 19 18 41 41 H 0.96697 * 113.99497 * 60.00191 * 21 20 19 42 42 H 1.48499 * 109.99498 * 58.68119 * 22 20 19 43 43 H 1.48496 * 109.99814 * 179.97438 * 22 20 19 44 44 H 1.07999 * 122.54049 * 180.02562 * 23 19 18 45 45 H 1.09002 * 109.47153 * 60.00231 * 24 10 9 46 46 H 1.09001 * 109.47289 * 180.02562 * 24 10 9 47 47 H 1.09000 * 109.47486 * 59.99547 * 25 6 5 48 48 H 1.09002 * 109.46716 * 299.99630 * 25 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 1 1.8053 0.9513 0.0000 4 6 1.9586 -0.6925 1.1994 5 6 1.9587 -0.6925 -1.1994 6 6 3.4834 -0.5846 -1.2638 7 1 3.9140 -0.9636 -0.3369 8 6 4.0038 -1.4096 -2.4425 9 6 5.5287 -1.3022 -2.5065 10 6 5.9294 0.1626 -2.6930 11 1 5.4991 0.5418 -3.6199 12 7 7.3894 0.2654 -2.7548 13 16 8.0992 1.3910 -3.7405 14 8 9.5017 1.2625 -3.5516 15 8 7.4712 1.2664 -5.0092 16 6 7.6572 2.9800 -3.1206 17 6 6.5667 3.6313 -3.5281 18 16 6.4542 5.1744 -2.6916 19 6 7.9432 4.8424 -1.8163 20 6 8.5847 5.7648 -0.8119 21 8 9.8492 6.2063 -1.3102 22 14 7.4804 7.2381 -0.5280 23 6 8.4184 3.6496 -2.1781 24 6 5.4090 0.9876 -1.5142 25 6 3.8836 0.8803 -1.4504 26 1 -0.3634 -1.0276 0.0005 27 1 -0.3635 0.5138 0.8899 28 1 -0.3634 0.5138 -0.8900 29 1 1.5952 -0.1786 2.0895 30 1 1.5952 -1.7201 1.1995 31 1 3.0486 -0.6921 1.1998 32 1 1.5241 -0.2330 -2.0871 33 1 1.6703 -1.7428 -1.1557 34 1 3.5733 -1.0307 -3.3695 35 1 3.7187 -2.4533 -2.3095 36 1 5.9589 -1.6814 -1.5796 37 1 5.8993 -1.8896 -3.3466 38 1 7.9404 -0.3257 -2.2185 39 1 5.8598 3.2659 -4.2583 40 1 8.7302 5.2332 0.1284 41 1 9.7956 6.6883 -2.1468 42 1 6.1514 6.7900 -0.0399 43 1 8.1015 8.1552 0.4611 44 1 9.3278 3.2374 -1.7665 45 1 5.8393 0.6084 -0.5873 46 1 5.6941 2.0313 -1.6472 47 1 3.5129 1.4681 -0.6107 48 1 3.4530 1.2592 -2.3774 There are 62 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 62 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_40_17509432_15065232.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 12:59:15 Heat of formation + Delta-G solvation = 53.319086 kcal Electronic energy + Delta-G solvation = -29807.393733 eV Core-core repulsion = 25815.903566 eV Total energy + Delta-G solvation = -3991.490167 eV No. of doubly occupied orbitals = 62 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 362.129 amu Computer time = 1.15 seconds Orbital eigenvalues (eV) -44.61372 -41.37624 -40.36402 -39.11333 -38.36498 -37.73750 -37.19721 -33.62020 -33.18172 -32.69814 -31.98481 -29.57686 -28.09453 -27.70087 -25.86529 -25.39574 -24.38658 -22.90029 -22.28203 -21.78972 -21.16134 -20.12397 -20.06498 -19.76954 -19.42662 -18.93533 -18.69725 -18.40809 -17.60702 -17.19836 -17.14930 -16.95065 -16.77465 -16.34159 -16.28804 -16.23575 -16.05089 -15.82624 -15.76436 -15.71539 -15.53533 -15.26090 -15.22391 -15.07047 -14.88061 -14.75932 -14.23805 -14.02817 -14.02120 -13.87982 -13.86047 -13.74841 -13.51521 -13.34186 -13.25071 -13.01230 -12.91649 -12.51994 -11.79473 -11.46368 -11.09579 -10.78121 -6.01340 -1.68886 -1.52751 -1.42502 -0.59511 -0.32165 0.09252 0.32901 0.41506 0.48296 0.63652 0.66362 1.01308 1.06001 1.29817 1.35806 1.60516 1.65364 1.74701 1.76947 1.82458 1.90814 2.08972 2.09558 2.19557 2.24982 2.29273 2.35166 2.36588 2.45381 2.53471 2.59907 2.70751 2.74135 2.77227 2.83252 2.90616 3.02062 3.14002 3.28997 3.29721 3.36321 3.50914 3.51630 3.57698 3.73818 3.77996 3.91914 4.02341 4.16985 4.80113 5.67299 Molecular weight = 362.13amu Principal moments of inertia in cm(-1) A = 0.009561 B = 0.003746 C = 0.002929 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2927.774506 B = 7473.103824 C = 9558.505841 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.048 4.048 2 N -0.389 5.389 3 H 0.424 0.576 4 C -0.053 4.053 5 C -0.009 4.009 6 C -0.119 4.119 7 H 0.098 0.902 8 C -0.110 4.110 9 C -0.125 4.125 10 C 0.147 3.853 11 H 0.097 0.903 12 N -1.112 6.112 13 S 2.705 3.295 14 O -0.943 6.943 15 O -0.949 6.949 16 C -0.683 4.683 17 C -0.094 4.094 18 S 0.160 5.840 19 C -0.223 4.223 20 C -0.028 4.028 21 O -0.530 6.530 22 Si 0.658 3.342 23 C -0.044 4.044 24 C -0.145 4.145 25 C -0.128 4.128 26 H 0.123 0.877 27 H 0.124 0.876 28 H 0.124 0.876 29 H 0.124 0.876 30 H 0.124 0.876 31 H 0.124 0.876 32 H 0.133 0.867 33 H 0.133 0.867 34 H 0.080 0.920 35 H 0.082 0.918 36 H 0.077 0.923 37 H 0.087 0.913 38 H 0.423 0.577 39 H 0.184 0.816 40 H 0.126 0.874 41 H 0.384 0.616 42 H -0.241 1.241 43 H -0.229 1.229 44 H 0.158 0.842 45 H 0.079 0.921 46 H 0.079 0.921 47 H 0.062 0.938 48 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.018 -10.166 10.536 29.855 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 N 0.034 4.966 3 H 0.260 0.740 4 C -0.195 4.195 5 C -0.130 4.130 6 C -0.137 4.137 7 H 0.116 0.884 8 C -0.149 4.149 9 C -0.164 4.164 10 C 0.040 3.960 11 H 0.115 0.885 12 N -0.871 5.871 13 S 2.792 3.208 14 O -0.933 6.933 15 O -0.939 6.939 16 C -0.783 4.783 17 C -0.233 4.233 18 S 0.424 5.576 19 C -0.341 4.341 20 C -0.142 4.142 21 O -0.336 6.336 22 Si 0.557 3.443 23 C -0.072 4.072 24 C -0.184 4.184 25 C -0.166 4.166 26 H 0.142 0.858 27 H 0.143 0.857 28 H 0.142 0.858 29 H 0.143 0.857 30 H 0.142 0.858 31 H 0.142 0.858 32 H 0.151 0.849 33 H 0.151 0.849 34 H 0.099 0.901 35 H 0.101 0.899 36 H 0.095 0.905 37 H 0.106 0.894 38 H 0.258 0.742 39 H 0.201 0.799 40 H 0.143 0.857 41 H 0.232 0.768 42 H -0.166 1.166 43 H -0.152 1.152 44 H 0.175 0.825 45 H 0.098 0.902 46 H 0.098 0.902 47 H 0.080 0.920 48 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -26.986 -9.041 10.826 30.450 hybrid contribution 1.187 -1.036 0.823 1.778 sum -25.799 -10.077 11.648 30.047 Atomic orbital electron populations 1.24152 0.75469 1.09745 1.09613 1.45125 1.16365 1.19089 1.15997 0.73970 1.24202 1.06004 1.02572 0.86748 1.24181 0.99024 1.02572 0.87262 1.21873 0.90274 0.98475 1.03098 0.88369 1.21499 0.96164 1.00302 0.96906 1.21811 0.94819 0.95431 1.04378 1.20860 0.79352 0.96843 0.98964 0.88525 1.55690 1.14381 1.52227 1.64809 1.01810 0.73164 0.72603 0.73261 1.93656 1.28402 1.85579 1.85649 1.93627 1.77555 1.85669 1.37015 1.30040 1.06344 1.26893 1.15026 1.25905 0.99232 0.97817 1.00349 1.84436 1.21925 1.17506 1.33700 1.25144 1.01022 1.01131 1.06821 1.24469 0.91440 1.02113 0.96148 1.86579 1.26742 1.76482 1.43756 0.94907 0.78387 0.80306 0.90661 1.19635 0.99539 0.93199 0.94856 1.22160 0.93966 1.02041 1.00248 1.21793 0.98005 0.93933 1.02890 0.85847 0.85728 0.85772 0.85730 0.85754 0.85782 0.84901 0.84901 0.90087 0.89931 0.90470 0.89424 0.74196 0.79903 0.85718 0.76834 1.16552 1.15152 0.82471 0.90239 0.90245 0.91957 0.89734 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 29. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.05 1.54 9.19 60.06 0.55 2.10 16 2 N -0.39 12.82 0.66 -251.26 -0.17 12.65 16 3 H 0.42 -14.41 6.62 -39.29 -0.26 -14.67 16 4 C -0.05 1.70 8.93 60.06 0.54 2.23 16 5 C -0.01 0.28 4.12 -3.83 -0.02 0.26 16 6 C -0.12 3.21 2.07 -90.63 -0.19 3.02 16 7 H 0.10 -2.72 6.18 -51.93 -0.32 -3.05 16 8 C -0.11 2.54 5.20 -26.73 -0.14 2.40 16 9 C -0.13 2.44 5.45 -26.73 -0.15 2.29 16 10 C 0.15 -2.64 2.79 -67.94 -0.19 -2.83 16 11 H 0.10 -1.70 7.50 -51.93 -0.39 -2.09 16 12 N -1.11 16.40 5.47 -4.90 -0.03 16.37 16 13 S 2.71 -27.01 5.78 -107.50 -0.62 -27.63 16 14 O -0.94 5.17 17.63 -57.17 -1.01 4.17 16 15 O -0.95 6.87 16.97 -57.17 -0.97 5.90 16 16 C -0.68 7.64 5.00 -41.21 -0.21 7.43 16 17 C -0.09 1.21 9.76 29.04 0.28 1.49 16 18 S 0.16 -2.03 20.60 -107.50 -2.21 -4.25 16 19 C -0.22 2.41 5.70 -36.00 -0.21 2.20 16 20 C -0.03 0.29 2.96 36.00 0.11 0.39 16 21 O -0.53 4.46 12.88 -35.23 -0.45 4.00 16 22 Si 0.66 -7.04 30.98 -169.99 -5.27 -12.30 16 23 C -0.04 0.44 9.59 -41.21 -0.40 0.05 16 24 C -0.14 2.97 5.53 -26.70 -0.15 2.82 16 25 C -0.13 3.23 4.96 -26.70 -0.13 3.09 16 26 H 0.12 -3.91 8.14 -51.93 -0.42 -4.33 16 27 H 0.12 -3.97 8.14 -51.93 -0.42 -4.40 16 28 H 0.12 -3.97 8.11 -51.93 -0.42 -4.39 16 29 H 0.12 -3.95 8.14 -51.92 -0.42 -4.37 16 30 H 0.12 -3.91 8.11 -51.93 -0.42 -4.34 16 31 H 0.12 -3.87 6.19 -51.93 -0.32 -4.20 16 32 H 0.13 -4.14 8.09 -51.93 -0.42 -4.56 16 33 H 0.13 -4.12 8.09 -51.93 -0.42 -4.54 16 34 H 0.08 -1.83 8.14 -51.93 -0.42 -2.25 16 35 H 0.08 -1.90 8.14 -51.93 -0.42 -2.33 16 36 H 0.08 -1.52 8.14 -51.93 -0.42 -1.95 16 37 H 0.09 -1.51 8.14 -51.93 -0.42 -1.93 16 38 H 0.42 -6.71 8.84 -34.47 -0.30 -7.01 16 39 H 0.18 -2.78 8.00 -52.48 -0.42 -3.20 16 40 H 0.13 -1.33 7.96 -51.93 -0.41 -1.74 16 41 H 0.38 -4.56 8.70 45.56 0.40 -4.17 16 42 H -0.24 2.40 7.11 56.52 0.40 2.80 16 43 H -0.23 1.62 7.11 56.52 0.40 2.02 16 44 H 0.16 -1.49 7.97 -52.49 -0.42 -1.91 16 45 H 0.08 -1.63 8.14 -51.93 -0.42 -2.05 16 46 H 0.08 -1.48 6.19 -51.93 -0.32 -1.81 16 47 H 0.06 -1.72 6.63 -51.93 -0.34 -2.06 16 48 H 0.08 -2.11 8.14 -51.93 -0.42 -2.54 16 LS Contribution 392.89 15.07 5.92 5.92 Total: 1.00 -40.36 392.89 -12.89 -53.25 By element: Atomic # 1 Polarization: -77.24 SS G_CDS: -7.80 Total: -85.04 kcal Atomic # 6 Polarization: 27.24 SS G_CDS: -0.29 Total: 26.96 kcal Atomic # 7 Polarization: 29.22 SS G_CDS: -0.19 Total: 29.02 kcal Atomic # 8 Polarization: 16.50 SS G_CDS: -2.43 Total: 14.07 kcal Atomic # 14 Polarization: -7.04 SS G_CDS: -5.27 Total: -12.30 kcal Atomic # 16 Polarization: -29.04 SS G_CDS: -2.84 Total: -31.88 kcal Total LS contribution 5.92 Total: 5.92 kcal Total: -40.36 -12.89 -53.25 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_40_17509432_15065232.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 106.568 kcal (2) G-P(sol) polarization free energy of solvation -40.357 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 66.211 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.892 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -53.249 kcal (6) G-S(sol) free energy of system = (1) + (5) 53.319 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.15 seconds