Wall clock time and date at job start Tue Mar 9 2021 12:59:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46899 * 1 3 3 H 1.00899 * 109.47168 * 2 1 4 4 C 1.46899 * 109.46889 * 119.99922 * 2 1 3 5 5 C 1.46897 * 109.47309 * 239.99802 * 2 1 3 6 6 C 1.52992 * 109.47438 * 175.00239 * 5 2 1 7 7 H 1.09002 * 109.47103 * 54.99785 * 6 5 2 8 8 C 1.52997 * 109.47482 * 175.00032 * 6 5 2 9 9 C 1.53000 * 109.47060 * 180.02562 * 8 6 5 10 10 C 1.53002 * 109.47233 * 299.99657 * 9 8 6 11 11 H 1.09002 * 109.47075 * 300.00932 * 10 9 8 12 12 N 1.46492 * 109.47204 * 180.02562 * 10 9 8 13 13 S 1.65603 * 120.00024 * 145.00296 * 12 10 9 14 14 O 1.42096 * 106.40250 * 178.54038 * 13 12 10 15 15 O 1.42104 * 106.40120 * 311.46096 * 13 12 10 16 16 C 1.76198 * 107.21995 * 64.99748 * 13 12 10 17 17 C 1.33392 * 122.54161 * 269.71203 * 16 13 12 18 18 S 1.75887 * 109.59437 * 179.90152 * 17 16 13 19 19 C 1.75885 * 90.96977 * 0.30241 * 18 17 16 20 20 C 1.50697 * 125.20308 * 179.79172 * 19 18 17 21 21 O 1.42904 * 109.47153 * 245.04008 * 20 19 18 22 22 Si 1.86302 * 109.47226 * 5.03944 * 20 19 18 23 23 C 1.33394 * 109.59437 * 359.83050 * 19 18 17 24 24 C 1.52997 * 109.46817 * 60.00194 * 10 9 8 25 25 C 1.52999 * 109.46961 * 295.00393 * 6 5 2 26 26 H 1.09000 * 109.47442 * 180.02562 * 1 2 3 27 27 H 1.09002 * 109.47844 * 300.00150 * 1 2 3 28 28 H 1.09003 * 109.47365 * 60.00402 * 1 2 3 29 29 H 1.09010 * 109.47149 * 300.00012 * 4 2 1 30 30 H 1.09000 * 109.47347 * 59.99613 * 4 2 1 31 31 H 1.09004 * 109.47334 * 180.02562 * 4 2 1 32 32 H 1.09001 * 109.46987 * 54.99839 * 5 2 1 33 33 H 1.09002 * 109.46916 * 295.00041 * 5 2 1 34 34 H 1.09002 * 109.47153 * 59.99783 * 8 6 5 35 35 H 1.09001 * 109.46832 * 299.99974 * 8 6 5 36 36 H 1.08992 * 109.47399 * 59.99823 * 9 8 6 37 37 H 1.09004 * 109.46724 * 180.02562 * 9 8 6 38 38 H 0.96991 * 120.00401 * 324.99881 * 12 10 9 39 39 H 1.08004 * 125.20297 * 0.02689 * 17 16 13 40 40 H 1.09000 * 109.47023 * 125.04145 * 20 19 18 41 41 H 0.96697 * 113.99497 * 60.00191 * 21 20 19 42 42 H 1.48499 * 109.99498 * 58.68119 * 22 20 19 43 43 H 1.48496 * 109.99814 * 179.97438 * 22 20 19 44 44 H 1.07999 * 122.54049 * 180.02562 * 23 19 18 45 45 H 1.09002 * 109.47153 * 60.00231 * 24 10 9 46 46 H 1.09001 * 109.47289 * 180.02562 * 24 10 9 47 47 H 1.09000 * 109.47486 * 59.99547 * 25 6 5 48 48 H 1.09002 * 109.46716 * 299.99630 * 25 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 1 1.8053 0.9513 0.0000 4 6 1.9586 -0.6925 1.1994 5 6 1.9587 -0.6925 -1.1994 6 6 3.4834 -0.5846 -1.2638 7 1 3.9140 -0.9636 -0.3369 8 6 4.0038 -1.4096 -2.4425 9 6 5.5287 -1.3022 -2.5065 10 6 5.9294 0.1626 -2.6930 11 1 5.4991 0.5418 -3.6199 12 7 7.3894 0.2654 -2.7548 13 16 8.0992 1.3910 -3.7405 14 8 9.5017 1.2625 -3.5516 15 8 7.4712 1.2664 -5.0092 16 6 7.6572 2.9800 -3.1206 17 6 6.5667 3.6313 -3.5281 18 16 6.4542 5.1744 -2.6916 19 6 7.9432 4.8424 -1.8163 20 6 8.5847 5.7648 -0.8119 21 8 9.8492 6.2063 -1.3102 22 14 7.4804 7.2381 -0.5280 23 6 8.4184 3.6496 -2.1781 24 6 5.4090 0.9876 -1.5142 25 6 3.8836 0.8803 -1.4504 26 1 -0.3634 -1.0276 0.0005 27 1 -0.3635 0.5138 0.8899 28 1 -0.3634 0.5138 -0.8900 29 1 1.5952 -0.1786 2.0895 30 1 1.5952 -1.7201 1.1995 31 1 3.0486 -0.6921 1.1998 32 1 1.5241 -0.2330 -2.0871 33 1 1.6703 -1.7428 -1.1557 34 1 3.5733 -1.0307 -3.3695 35 1 3.7187 -2.4533 -2.3095 36 1 5.9589 -1.6814 -1.5796 37 1 5.8993 -1.8896 -3.3466 38 1 7.9404 -0.3257 -2.2185 39 1 5.8598 3.2659 -4.2583 40 1 8.7302 5.2332 0.1284 41 1 9.7956 6.6883 -2.1468 42 1 6.1514 6.7900 -0.0399 43 1 8.1015 8.1552 0.4611 44 1 9.3278 3.2374 -1.7665 45 1 5.8393 0.6084 -0.5873 46 1 5.6941 2.0313 -1.6472 47 1 3.5129 1.4681 -0.6107 48 1 3.4530 1.2592 -2.3774 There are 62 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 62 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_40_17509432_15065232.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 12:59:15 Heat of formation + Delta-G solvation = 23.131594 kcal Electronic energy + Delta-G solvation = -29808.702761 eV Core-core repulsion = 25815.903566 eV Total energy + Delta-G solvation = -3992.799195 eV No. of doubly occupied orbitals = 62 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 362.129 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -42.14947 -39.69291 -39.43989 -38.43923 -37.59017 -37.10232 -35.60779 -31.99490 -31.70100 -31.37234 -29.39115 -27.44115 -27.22547 -25.36894 -24.96532 -23.65335 -22.55908 -21.52076 -21.05422 -20.16291 -19.25267 -19.16266 -18.65224 -17.97924 -17.74871 -17.55628 -17.44607 -17.12458 -16.36017 -16.08293 -15.63046 -15.49956 -15.28454 -15.06885 -14.94305 -14.36589 -14.28543 -14.14959 -14.03728 -13.96832 -13.71425 -13.70095 -13.42552 -13.33612 -13.33261 -13.17820 -13.15517 -13.11645 -12.96183 -12.88925 -12.57917 -12.25269 -12.11352 -12.07690 -11.79777 -11.64435 -11.51639 -11.26665 -10.70913 -10.46109 -10.18269 -9.84266 -5.19322 -0.84107 -0.51933 0.32826 0.56534 0.92487 1.03885 1.15815 1.46100 1.84343 2.00822 2.63041 2.89495 3.00753 3.16234 3.24922 3.38407 3.55453 3.56938 3.63428 3.72991 3.82903 3.87106 4.08576 4.10754 4.15998 4.20148 4.26294 4.28834 4.32588 4.33833 4.37798 4.39071 4.52750 4.59313 4.62223 4.66251 4.70273 4.78180 4.84113 4.88077 4.89493 4.94205 4.99303 5.08104 5.17634 5.22397 5.25319 5.33661 5.50354 5.97041 6.58118 Molecular weight = 362.13amu Principal moments of inertia in cm(-1) A = 0.009561 B = 0.003746 C = 0.002929 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2927.774506 B = 7473.103824 C = 9558.505841 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.047 4.047 2 N -0.374 5.374 3 H 0.433 0.567 4 C -0.056 4.056 5 C 0.001 3.999 6 C -0.111 4.111 7 H 0.109 0.891 8 C -0.110 4.110 9 C -0.128 4.128 10 C 0.136 3.864 11 H 0.091 0.909 12 N -1.103 6.103 13 S 2.716 3.284 14 O -0.999 6.999 15 O -0.983 6.983 16 C -0.688 4.688 17 C -0.083 4.083 18 S 0.210 5.790 19 C -0.235 4.235 20 C -0.037 4.037 21 O -0.555 6.555 22 Si 0.726 3.274 23 C -0.057 4.057 24 C -0.147 4.147 25 C -0.129 4.129 26 H 0.120 0.880 27 H 0.124 0.876 28 H 0.126 0.874 29 H 0.126 0.874 30 H 0.122 0.878 31 H 0.121 0.879 32 H 0.143 0.857 33 H 0.140 0.860 34 H 0.077 0.923 35 H 0.085 0.915 36 H 0.080 0.920 37 H 0.057 0.943 38 H 0.427 0.573 39 H 0.208 0.792 40 H 0.122 0.878 41 H 0.396 0.604 42 H -0.241 1.241 43 H -0.283 1.283 44 H 0.140 0.860 45 H 0.079 0.921 46 H 0.063 0.937 47 H 0.096 0.904 48 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -29.487 -9.876 11.299 33.086 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 N 0.049 4.951 3 H 0.270 0.730 4 C -0.198 4.198 5 C -0.121 4.121 6 C -0.129 4.129 7 H 0.127 0.873 8 C -0.149 4.149 9 C -0.167 4.167 10 C 0.030 3.970 11 H 0.109 0.891 12 N -0.865 5.865 13 S 2.806 3.194 14 O -0.989 6.989 15 O -0.973 6.973 16 C -0.790 4.790 17 C -0.223 4.223 18 S 0.474 5.526 19 C -0.353 4.353 20 C -0.149 4.149 21 O -0.363 6.363 22 Si 0.628 3.372 23 C -0.086 4.086 24 C -0.186 4.186 25 C -0.167 4.167 26 H 0.138 0.862 27 H 0.143 0.857 28 H 0.145 0.855 29 H 0.144 0.856 30 H 0.141 0.859 31 H 0.140 0.860 32 H 0.161 0.839 33 H 0.158 0.842 34 H 0.096 0.904 35 H 0.104 0.896 36 H 0.098 0.902 37 H 0.076 0.924 38 H 0.264 0.736 39 H 0.225 0.775 40 H 0.140 0.860 41 H 0.246 0.754 42 H -0.165 1.165 43 H -0.209 1.209 44 H 0.158 0.842 45 H 0.098 0.902 46 H 0.082 0.918 47 H 0.115 0.885 48 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -30.454 -8.781 11.559 33.736 hybrid contribution 2.274 -1.123 0.628 2.613 sum -28.179 -9.904 12.187 32.260 Atomic orbital electron populations 1.24141 0.75429 1.09609 1.09720 1.44903 1.16090 1.19270 1.14837 0.72974 1.24211 1.05815 1.02708 0.87088 1.23962 0.96070 1.03609 0.88456 1.21697 0.93043 0.96504 1.01658 0.87334 1.21467 0.93154 1.01443 0.98790 1.21830 0.97889 0.93776 1.03218 1.21257 0.77017 0.98534 1.00239 0.89098 1.55406 1.16139 1.50909 1.64083 1.00963 0.71920 0.73318 0.73205 1.93574 1.32132 1.86658 1.86531 1.93575 1.77737 1.86461 1.39481 1.29655 1.07332 1.26303 1.15741 1.26247 0.98632 0.97614 0.99765 1.84223 1.19673 1.16435 1.32273 1.25126 1.02317 1.00722 1.07096 1.24655 0.91151 1.02813 0.96302 1.86533 1.28102 1.76924 1.44778 0.94125 0.76989 0.77180 0.88915 1.19578 0.99468 0.93886 0.95622 1.22158 0.97549 1.00245 0.98657 1.21860 0.94305 0.95764 1.04756 0.86155 0.85738 0.85535 0.85602 0.85904 0.86034 0.83863 0.84156 0.90396 0.89626 0.90168 0.92396 0.73629 0.77522 0.86042 0.75386 1.16509 1.20927 0.84202 0.90203 0.91797 0.88521 0.89291 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.05 3.06 9.19 127.69 1.17 4.23 16 2 N -0.37 24.95 0.66 -948.84 -0.62 24.33 16 3 H 0.43 -30.04 6.62 -89.69 -0.59 -30.64 16 4 C -0.06 3.58 8.93 127.69 1.14 4.72 16 5 C 0.00 -0.06 4.12 86.30 0.36 0.29 16 6 C -0.11 6.02 2.07 -10.80 -0.02 5.99 16 7 H 0.11 -6.09 6.18 -2.39 -0.01 -6.10 16 8 C -0.11 4.96 5.20 30.59 0.16 5.12 16 9 C -0.13 4.65 5.45 30.60 0.17 4.81 16 10 C 0.14 -4.54 2.79 44.99 0.13 -4.42 16 11 H 0.09 -2.97 7.50 -2.39 -0.02 -2.99 16 12 N -1.10 28.70 5.47 -169.40 -0.93 27.77 16 13 S 2.72 -44.11 5.78 -56.49 -0.33 -44.43 16 14 O -1.00 6.21 17.63 -128.00 -2.26 3.95 16 15 O -0.98 10.90 16.97 -128.00 -2.17 8.73 16 16 C -0.69 13.79 5.00 21.22 0.11 13.90 16 17 C -0.08 2.10 9.76 66.72 0.65 2.75 16 18 S 0.21 -5.38 20.60 -56.49 -1.16 -6.54 16 19 C -0.23 4.72 5.70 24.59 0.14 4.86 16 20 C -0.04 0.69 2.96 71.23 0.21 0.90 16 21 O -0.56 8.06 12.88 -148.98 -1.92 6.15 16 22 Si 0.73 -14.86 30.98 68.60 2.13 -12.74 16 23 C -0.06 0.99 9.59 21.22 0.20 1.19 16 24 C -0.15 5.87 5.53 30.61 0.17 6.04 16 25 C -0.13 6.58 4.96 30.61 0.15 6.73 16 26 H 0.12 -7.64 8.14 -2.39 -0.02 -7.66 16 27 H 0.12 -7.97 8.14 -2.39 -0.02 -7.99 16 28 H 0.13 -8.18 8.11 -2.39 -0.02 -8.20 16 29 H 0.13 -8.00 8.14 -2.38 -0.02 -8.01 16 30 H 0.12 -7.74 8.11 -2.39 -0.02 -7.76 16 31 H 0.12 -7.64 6.19 -2.38 -0.01 -7.66 16 32 H 0.14 -9.13 8.09 -2.39 -0.02 -9.15 16 33 H 0.14 -8.85 8.09 -2.39 -0.02 -8.87 16 34 H 0.08 -3.44 8.14 -2.39 -0.02 -3.46 16 35 H 0.09 -3.88 8.14 -2.39 -0.02 -3.90 16 36 H 0.08 -2.98 8.14 -2.39 -0.02 -3.00 16 37 H 0.06 -1.76 8.14 -2.39 -0.02 -1.78 16 38 H 0.43 -11.89 8.84 -96.76 -0.85 -12.75 16 39 H 0.21 -6.31 8.00 -2.91 -0.02 -6.33 16 40 H 0.12 -2.30 7.96 -2.39 -0.02 -2.32 16 41 H 0.40 -8.65 8.70 -74.06 -0.64 -9.29 16 42 H -0.24 4.93 7.11 99.48 0.71 5.64 16 43 H -0.28 3.25 7.11 99.48 0.71 3.96 16 44 H 0.14 -2.04 7.97 -2.91 -0.02 -2.07 16 45 H 0.08 -3.18 8.14 -2.39 -0.02 -3.20 16 46 H 0.06 -2.32 6.19 -2.39 -0.01 -2.33 16 47 H 0.10 -5.55 6.63 -2.39 -0.02 -5.57 16 48 H 0.09 -4.54 8.14 -2.39 -0.02 -4.56 16 Total: 1.00 -88.03 392.89 -3.61 -91.63 By element: Atomic # 1 Polarization: -154.90 SS G_CDS: -1.07 Total: -155.98 kcal Atomic # 6 Polarization: 52.40 SS G_CDS: 4.73 Total: 57.13 kcal Atomic # 7 Polarization: 53.65 SS G_CDS: -1.55 Total: 52.10 kcal Atomic # 8 Polarization: 25.17 SS G_CDS: -6.35 Total: 18.82 kcal Atomic # 14 Polarization: -14.86 SS G_CDS: 2.13 Total: -12.74 kcal Atomic # 16 Polarization: -49.48 SS G_CDS: -1.49 Total: -50.97 kcal Total: -88.03 -3.61 -91.63 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_40_17509432_15065232.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 114.764 kcal (2) G-P(sol) polarization free energy of solvation -88.025 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.739 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.607 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -91.632 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.132 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds