Wall clock time and date at job start Tue Mar 9 2021 12:59:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46900 * 1 3 3 H 1.00900 * 109.46708 * 2 1 4 4 C 1.46899 * 109.47188 * 120.00581 * 2 1 3 5 5 C 1.46901 * 109.46798 * 240.00744 * 2 1 3 6 6 C 1.52992 * 109.47618 * 65.99625 * 5 2 1 7 7 H 1.08995 * 109.47409 * 305.46668 * 6 5 2 8 8 C 1.53008 * 109.46887 * 65.46372 * 6 5 2 9 9 C 1.53005 * 109.46797 * 179.97438 * 8 6 5 10 10 C 1.52994 * 109.47433 * 300.00129 * 9 8 6 11 11 H 1.08997 * 109.47303 * 179.97438 * 10 9 8 12 12 N 1.46500 * 109.47205 * 300.00210 * 10 9 8 13 13 S 1.65603 * 120.00114 * 215.00335 * 12 10 9 14 14 O 1.42100 * 106.39705 * 311.45586 * 13 12 10 15 15 O 1.42098 * 106.40023 * 178.53822 * 13 12 10 16 16 C 1.76200 * 107.21857 * 64.99443 * 13 12 10 17 17 C 1.33388 * 125.20211 * 149.99848 * 16 13 12 18 18 C 1.50705 * 122.53847 * 359.96168 * 17 16 13 19 19 O 1.42902 * 109.47277 * 74.99609 * 18 17 16 20 20 Si 1.86297 * 109.46932 * 194.99662 * 18 17 16 21 21 C 1.38420 * 114.92027 * 179.97438 * 17 16 13 22 22 C 1.33384 * 114.92485 * 0.02562 * 21 17 16 23 23 S 1.75877 * 125.20421 * 329.69729 * 16 13 12 24 24 C 1.53001 * 109.47018 * 59.99915 * 10 9 8 25 25 C 1.53000 * 109.47020 * 185.46235 * 6 5 2 26 26 H 1.09001 * 109.47461 * 293.72849 * 1 2 3 27 27 H 1.08999 * 109.47247 * 53.73079 * 1 2 3 28 28 H 1.09005 * 109.47171 * 173.73073 * 1 2 3 29 29 H 1.08995 * 109.47056 * 180.02562 * 4 2 1 30 30 H 1.09004 * 109.46707 * 299.99846 * 4 2 1 31 31 H 1.08997 * 109.47256 * 59.99594 * 4 2 1 32 32 H 1.09004 * 109.46876 * 305.99260 * 5 2 1 33 33 H 1.09002 * 109.46875 * 185.99832 * 5 2 1 34 34 H 1.08997 * 109.47262 * 60.00288 * 8 6 5 35 35 H 1.08994 * 109.46997 * 299.99697 * 8 6 5 36 36 H 1.09001 * 109.46634 * 179.97438 * 9 8 6 37 37 H 1.09007 * 109.46844 * 60.00452 * 9 8 6 38 38 H 0.97001 * 120.00239 * 34.99329 * 12 10 9 39 39 H 1.09000 * 109.47302 * 314.99605 * 18 17 16 40 40 H 0.96696 * 114.00408 * 180.02562 * 19 18 17 41 41 H 1.48502 * 110.00028 * 178.68140 * 20 18 17 42 42 H 1.48501 * 110.00166 * 299.99966 * 20 18 17 43 43 H 1.08009 * 122.53663 * 180.02562 * 21 17 16 44 44 H 1.08002 * 125.20736 * 179.97438 * 22 21 17 45 45 H 1.08999 * 109.47039 * 60.00721 * 24 10 9 46 46 H 1.09002 * 109.46972 * 180.02562 * 24 10 9 47 47 H 1.08997 * 109.47450 * 299.99909 * 25 6 5 48 48 H 1.09000 * 109.47091 * 60.00777 * 25 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 1 1.8053 0.9513 0.0000 4 6 1.9587 -0.6926 1.1994 5 6 1.9586 -0.6924 -1.1996 6 6 1.5754 0.1107 -2.4441 7 1 0.4999 0.2879 -2.4453 8 6 2.3131 1.4511 -2.4333 9 6 1.9303 2.2539 -3.6783 10 6 2.3195 1.4677 -4.9317 11 1 2.0464 2.0394 -5.8186 12 7 3.7650 1.2295 -4.9296 13 16 4.6061 1.2278 -6.3561 14 8 3.8810 0.3927 -7.2483 15 8 5.9685 1.0066 -6.0184 16 6 4.5157 2.8588 -7.0169 17 6 5.4483 3.4326 -7.7786 18 6 6.7218 2.7280 -8.1696 19 8 6.4388 1.7584 -9.1804 20 14 7.9430 3.9719 -8.8269 21 6 5.1578 4.7243 -8.1824 22 6 3.9897 5.1997 -7.7483 23 16 3.1787 3.9764 -6.7791 24 6 1.5819 0.1273 -4.9425 25 6 1.9642 -0.6753 -3.6979 26 1 -0.3634 0.4135 0.9408 27 1 -0.3634 0.6079 -0.8285 28 1 -0.3634 -1.0216 -0.1122 29 1 3.0486 -0.6922 1.1996 30 1 1.5953 -0.1788 2.0894 31 1 1.5953 -1.7202 1.1993 32 1 1.5102 -1.6844 -1.2549 33 1 3.0433 -0.7863 -1.1475 34 1 3.3886 1.2740 -2.4321 35 1 2.0361 2.0110 -1.5401 36 1 2.4556 3.2090 -3.6703 37 1 0.8548 2.4311 -3.6798 38 1 4.2296 1.0730 -4.0926 39 1 7.1444 2.2302 -7.2968 40 1 7.2144 1.2651 -9.4805 41 1 9.2146 3.2943 -9.1863 42 1 7.3788 4.6576 -10.0172 43 1 5.8265 5.3034 -8.8022 44 1 3.5995 6.1837 -7.9627 45 1 0.5064 0.3045 -4.9442 46 1 1.8595 -0.4330 -5.8353 47 1 3.0397 -0.8525 -3.6968 48 1 1.4386 -1.6302 -3.7056 There are 62 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 62 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_40_17509452_13652106.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 12:59:30 Heat of formation + Delta-G solvation = 30.992164 kcal Electronic energy + Delta-G solvation = -30241.604145 eV Core-core repulsion = 26249.145810 eV Total energy + Delta-G solvation = -3992.458335 eV No. of doubly occupied orbitals = 62 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 362.129 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -42.16092 -40.09550 -39.79988 -38.41628 -37.48241 -37.11396 -35.20504 -31.83399 -31.61204 -31.42553 -29.35328 -28.17431 -27.76794 -25.45831 -24.24501 -23.63632 -22.67239 -21.89458 -20.88126 -19.77352 -19.67278 -19.21502 -18.84536 -18.44903 -17.72226 -17.35557 -17.24862 -17.05825 -16.39519 -16.12219 -16.01168 -15.86978 -15.30616 -15.04016 -14.75679 -14.53018 -14.38089 -14.26972 -13.93044 -13.78073 -13.75823 -13.56192 -13.44992 -13.36052 -13.26919 -13.19132 -13.11585 -13.06299 -12.94261 -12.86103 -12.59162 -12.49060 -12.44829 -12.15487 -11.72936 -11.58412 -11.38855 -11.22835 -10.70347 -10.60060 -10.44090 -9.65554 -5.08307 -0.88748 -0.71534 0.17783 0.54413 1.05960 1.10459 1.16200 1.50501 1.82027 1.84676 2.43803 2.90571 3.01578 3.12245 3.27192 3.35090 3.50845 3.62542 3.66777 3.75447 3.81743 3.89806 4.02144 4.07389 4.10879 4.18942 4.22991 4.30109 4.33562 4.34627 4.38107 4.41317 4.53997 4.59989 4.65400 4.67109 4.71211 4.82875 4.87520 4.88863 4.90201 4.93251 4.99313 5.11392 5.14168 5.21585 5.28167 5.36232 5.47580 5.98938 6.30938 Molecular weight = 362.13amu Principal moments of inertia in cm(-1) A = 0.018892 B = 0.003082 C = 0.002946 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1481.721075 B = 9082.612287 C = 9501.581740 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.056 4.056 2 N -0.371 5.371 3 H 0.434 0.566 4 C -0.047 4.047 5 C -0.001 4.001 6 C -0.108 4.108 7 H 0.117 0.883 8 C -0.135 4.135 9 C -0.127 4.127 10 C 0.138 3.862 11 H 0.066 0.934 12 N -1.090 6.090 13 S 2.727 3.273 14 O -0.982 6.982 15 O -0.975 6.975 16 C -0.799 4.799 17 C 0.038 3.962 18 C -0.132 4.132 19 O -0.559 6.559 20 Si 0.788 3.212 21 C -0.182 4.182 22 C -0.157 4.157 23 S 0.249 5.751 24 C -0.146 4.146 25 C -0.114 4.114 26 H 0.127 0.873 27 H 0.126 0.874 28 H 0.119 0.881 29 H 0.124 0.876 30 H 0.127 0.873 31 H 0.118 0.882 32 H 0.138 0.862 33 H 0.139 0.861 34 H 0.079 0.921 35 H 0.107 0.893 36 H 0.081 0.919 37 H 0.102 0.898 38 H 0.433 0.567 39 H 0.110 0.890 40 H 0.401 0.599 41 H -0.282 1.282 42 H -0.282 1.282 43 H 0.163 0.837 44 H 0.209 0.791 45 H 0.096 0.904 46 H 0.044 0.956 47 H 0.066 0.934 48 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.872 -3.165 31.571 34.630 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 N 0.051 4.949 3 H 0.273 0.727 4 C -0.189 4.189 5 C -0.123 4.123 6 C -0.126 4.126 7 H 0.135 0.865 8 C -0.172 4.172 9 C -0.165 4.165 10 C 0.031 3.969 11 H 0.083 0.917 12 N -0.857 5.857 13 S 2.813 3.187 14 O -0.971 6.971 15 O -0.965 6.965 16 C -1.000 5.000 17 C 0.021 3.979 18 C -0.241 4.241 19 O -0.370 6.370 20 Si 0.690 3.310 21 C -0.211 4.211 22 C -0.294 4.294 23 S 0.515 5.485 24 C -0.186 4.186 25 C -0.152 4.152 26 H 0.146 0.854 27 H 0.144 0.856 28 H 0.138 0.862 29 H 0.142 0.858 30 H 0.145 0.855 31 H 0.136 0.864 32 H 0.156 0.844 33 H 0.157 0.843 34 H 0.098 0.902 35 H 0.126 0.874 36 H 0.100 0.900 37 H 0.121 0.879 38 H 0.274 0.726 39 H 0.128 0.872 40 H 0.252 0.748 41 H -0.209 1.209 42 H -0.209 1.209 43 H 0.181 0.819 44 H 0.226 0.774 45 H 0.114 0.886 46 H 0.063 0.937 47 H 0.084 0.916 48 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -15.163 -3.653 31.237 34.915 hybrid contribution 1.838 -0.269 -2.083 2.791 sum -13.325 -3.921 29.154 32.294 Atomic orbital electron populations 1.24227 0.76152 1.09655 1.09772 1.44871 1.16031 1.19430 1.14519 0.72748 1.24136 1.05725 1.02425 0.86660 1.23962 1.06050 0.99605 0.82726 1.21677 1.03610 0.94768 0.92565 0.86494 1.21908 1.01710 0.94900 0.98702 1.21883 1.04009 0.98660 0.91994 1.21193 0.77432 0.97248 1.01023 0.91651 1.55338 1.17561 1.88526 1.24279 1.00810 0.72531 0.72261 0.73105 1.93594 1.74041 1.63997 1.65492 1.93520 1.34529 1.84721 1.83763 1.35594 1.09393 1.30296 1.24749 1.18151 0.93574 0.93906 0.92300 1.25496 1.01730 1.00167 0.96754 1.86519 1.39430 1.53398 1.57616 0.93900 0.73591 0.80264 0.83257 1.20470 1.00037 0.95367 1.05270 1.26652 0.97481 1.05099 1.00122 1.83428 1.15296 1.01593 1.48156 1.22078 1.01562 0.95524 0.99403 1.21446 1.02349 0.98765 0.92689 0.85425 0.85557 0.86239 0.85768 0.85465 0.86383 0.84438 0.84279 0.90213 0.87431 0.90024 0.87927 0.72629 0.87217 0.74771 1.20861 1.20864 0.81949 0.77407 0.88592 0.93660 0.91565 0.90277 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 3.60 8.87 127.69 1.13 4.73 16 2 N -0.37 24.71 0.66 -948.85 -0.62 24.08 16 3 H 0.43 -30.39 6.61 -89.69 -0.59 -30.99 16 4 C -0.05 3.05 9.17 127.69 1.17 4.22 16 5 C 0.00 0.08 4.11 86.30 0.36 0.43 16 6 C -0.11 5.75 2.09 -10.79 -0.02 5.73 16 7 H 0.12 -6.61 6.33 -2.39 -0.02 -6.62 16 8 C -0.13 6.93 4.79 30.60 0.15 7.08 16 9 C -0.13 5.31 5.63 30.59 0.17 5.49 16 10 C 0.14 -4.39 2.54 44.99 0.11 -4.28 16 11 H 0.07 -1.82 5.61 -2.39 -0.01 -1.83 16 12 N -1.09 30.62 4.74 -169.40 -0.80 29.82 16 13 S 2.73 -37.89 5.49 -56.49 -0.31 -38.20 16 14 O -0.98 5.14 17.28 -128.00 -2.21 2.92 16 15 O -0.98 9.29 15.53 -128.00 -1.99 7.31 16 16 C -0.80 10.81 6.48 66.72 0.43 11.24 16 17 C 0.04 -0.41 5.17 -20.92 -0.11 -0.52 16 18 C -0.13 1.29 2.19 71.24 0.16 1.44 16 19 O -0.56 3.39 12.86 -148.98 -1.92 1.47 16 20 Si 0.79 -10.49 30.42 68.60 2.09 -8.40 16 21 C -0.18 2.65 8.74 21.21 0.19 2.84 16 22 C -0.16 3.03 11.23 66.72 0.75 3.78 16 23 S 0.25 -5.24 20.65 -56.49 -1.17 -6.40 16 24 C -0.15 4.71 5.63 30.58 0.17 4.88 16 25 C -0.11 4.72 5.04 30.58 0.15 4.88 16 26 H 0.13 -8.18 8.06 -2.39 -0.02 -8.20 16 27 H 0.13 -8.10 6.52 -2.39 -0.02 -8.12 16 28 H 0.12 -7.49 7.98 -2.38 -0.02 -7.51 16 29 H 0.12 -7.90 8.10 -2.39 -0.02 -7.92 16 30 H 0.13 -8.13 8.10 -2.38 -0.02 -8.15 16 31 H 0.12 -7.37 8.14 -2.39 -0.02 -7.39 16 32 H 0.14 -8.41 7.99 -2.38 -0.02 -8.42 16 33 H 0.14 -8.59 8.07 -2.39 -0.02 -8.61 16 34 H 0.08 -4.02 6.50 -2.39 -0.02 -4.04 16 35 H 0.11 -6.38 6.62 -2.39 -0.02 -6.39 16 36 H 0.08 -3.28 8.14 -2.39 -0.02 -3.30 16 37 H 0.10 -4.56 8.14 -2.38 -0.02 -4.58 16 38 H 0.43 -15.17 6.81 -96.74 -0.66 -15.83 16 39 H 0.11 -1.16 5.80 -2.39 -0.01 -1.18 16 40 H 0.40 -5.53 8.74 -74.06 -0.65 -6.17 16 41 H -0.28 2.44 7.11 99.48 0.71 3.15 16 42 H -0.28 2.31 6.86 99.48 0.68 2.99 16 43 H 0.16 -2.70 5.57 -2.91 -0.02 -2.72 16 44 H 0.21 -5.36 8.06 -2.91 -0.02 -5.39 16 45 H 0.10 -3.38 8.14 -2.39 -0.02 -3.40 16 46 H 0.04 -1.00 7.64 -2.39 -0.02 -1.02 16 47 H 0.07 -2.58 7.44 -2.39 -0.02 -2.60 16 48 H 0.08 -3.24 8.14 -2.39 -0.02 -3.26 16 Total: 1.00 -89.94 380.55 -3.01 -92.95 By element: Atomic # 1 Polarization: -156.60 SS G_CDS: -0.89 Total: -157.49 kcal Atomic # 6 Polarization: 47.12 SS G_CDS: 4.81 Total: 51.93 kcal Atomic # 7 Polarization: 55.33 SS G_CDS: -1.43 Total: 53.90 kcal Atomic # 8 Polarization: 17.82 SS G_CDS: -6.11 Total: 11.71 kcal Atomic # 14 Polarization: -10.49 SS G_CDS: 2.09 Total: -8.40 kcal Atomic # 16 Polarization: -43.13 SS G_CDS: -1.48 Total: -44.60 kcal Total: -89.94 -3.01 -92.95 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_40_17509452_13652106.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 123.943 kcal (2) G-P(sol) polarization free energy of solvation -89.944 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.999 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.007 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -92.951 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.992 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds