Wall clock time and date at job start Tue Mar 9 2021 12:59:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.33388 * 125.20787 * 2 1 4 4 C 1.50708 * 122.53640 * 359.96863 * 3 2 1 5 5 O 1.42894 * 109.46902 * 217.67311 * 4 3 2 6 6 Si 1.86302 * 109.47083 * 337.67382 * 4 3 2 7 7 C 1.38420 * 114.92603 * 180.20521 * 3 2 1 8 8 S 1.76195 * 122.54221 * 179.76223 * 7 3 2 9 9 O 1.42110 * 106.40141 * 291.39346 * 8 7 3 10 10 O 1.42098 * 106.40410 * 158.47704 * 8 7 3 11 11 N 1.65602 * 107.22096 * 44.93490 * 8 7 3 12 12 C 1.46492 * 119.99742 * 65.84711 * 11 8 7 13 13 H 1.09000 * 109.47914 * 334.80850 * 12 11 8 14 14 C 1.53000 * 109.46889 * 94.80645 * 12 11 8 15 15 C 1.53006 * 109.47175 * 59.99811 * 14 12 11 16 16 C 1.53002 * 109.46937 * 60.00148 * 15 14 12 17 17 H 1.08999 * 109.46653 * 60.00070 * 16 15 14 18 18 C 1.53003 * 109.46632 * 180.02562 * 16 15 14 19 19 N 1.46908 * 109.46539 * 184.99943 * 18 16 15 20 20 H 1.00894 * 109.46748 * 305.00013 * 19 18 16 21 21 C 1.46901 * 109.46993 * 64.99906 * 19 18 16 22 22 C 1.46899 * 109.46569 * 184.99999 * 19 18 16 23 23 C 1.53000 * 109.47067 * 299.99918 * 16 15 14 24 24 C 1.52996 * 109.47155 * 60.00107 * 23 16 15 25 25 C 1.33386 * 114.91733 * 359.49470 * 7 3 2 26 26 C 1.50706 * 125.20511 * 180.24776 * 25 7 3 27 27 S 1.75879 * 109.59656 * 0.26890 * 25 7 3 28 28 H 1.08998 * 109.47353 * 180.28638 * 1 2 3 29 29 H 1.09001 * 109.46926 * 300.28616 * 1 2 3 30 30 H 1.08997 * 109.46721 * 60.28566 * 1 2 3 31 31 H 1.08995 * 109.46864 * 97.67095 * 4 3 2 32 32 H 0.96710 * 113.99530 * 180.02562 * 5 4 3 33 33 H 1.48496 * 109.99863 * 178.67891 * 6 4 3 34 34 H 1.48502 * 109.99822 * 299.99980 * 6 4 3 35 35 H 0.97005 * 119.99756 * 245.85701 * 11 8 7 36 36 H 1.09006 * 109.47449 * 180.02562 * 14 12 11 37 37 H 1.09001 * 109.47355 * 299.99831 * 14 12 11 38 38 H 1.09001 * 109.46631 * 180.02562 * 15 14 12 39 39 H 1.08996 * 109.46723 * 300.00042 * 15 14 12 40 40 H 1.08999 * 109.46698 * 304.99658 * 18 16 15 41 41 H 1.08996 * 109.47224 * 65.00150 * 18 16 15 42 42 H 1.09002 * 109.47192 * 59.99903 * 21 19 18 43 43 H 1.09003 * 109.46741 * 179.97438 * 21 19 18 44 44 H 1.08999 * 109.47492 * 299.99695 * 21 19 18 45 45 H 1.08994 * 109.47615 * 59.99780 * 22 19 18 46 46 H 1.09003 * 109.47116 * 180.02562 * 22 19 18 47 47 H 1.09002 * 109.47209 * 299.99847 * 22 19 18 48 48 H 1.09001 * 109.47025 * 300.00217 * 23 16 15 49 49 H 1.08996 * 109.46932 * 180.02562 * 23 16 15 50 50 H 1.08995 * 109.47277 * 179.97438 * 24 23 16 51 51 H 1.09006 * 109.47006 * 59.99650 * 24 23 16 52 52 H 1.08998 * 109.46911 * 89.99375 * 26 25 7 53 53 H 1.09001 * 109.47106 * 210.00143 * 26 25 7 54 54 H 1.09003 * 109.46711 * 330.00205 * 26 25 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2761 1.0899 0.0000 4 6 1.7053 2.4847 -0.0007 5 8 2.5122 3.3291 -0.8240 6 14 -0.0334 2.4438 -0.6687 7 6 3.6380 0.8428 -0.0045 8 16 4.8357 2.1351 -0.0115 9 8 4.7391 2.7649 -1.2818 10 8 6.0404 1.5685 0.4853 11 7 4.3518 3.2581 1.1052 12 6 4.3240 2.9111 2.5282 13 1 4.2073 1.8329 2.6372 14 6 5.6333 3.3514 3.1861 15 6 5.7971 4.8650 3.0332 16 6 4.6226 5.5759 3.7087 17 1 4.6021 5.3177 4.7675 18 6 4.7862 7.0894 3.5553 19 7 3.7249 7.7749 4.3048 20 1 2.8250 7.4346 4.0009 21 6 3.8895 7.5097 5.7402 22 6 3.8094 9.2211 4.0611 23 6 3.3134 5.1356 3.0508 24 6 3.1496 3.6221 3.2037 25 6 3.9751 -0.4477 0.0025 26 6 5.3861 -0.9772 0.0050 27 16 2.5210 -1.4372 0.0078 28 1 -0.3634 -1.0276 0.0051 29 1 -0.3633 0.5183 0.8874 30 1 -0.3633 0.5094 -0.8925 31 1 1.6942 2.8732 1.0176 32 1 2.2032 4.2443 -0.8707 33 1 -0.6188 3.8083 -0.6449 34 1 -0.0319 1.9159 -2.0567 35 1 4.0866 4.1456 0.8171 36 1 5.6129 3.0929 4.2448 37 1 6.4700 2.8450 2.7049 38 1 6.7301 5.1785 3.5015 39 1 5.8177 5.1230 1.9745 40 1 5.7587 7.3909 3.9443 41 1 4.7176 7.3572 2.5010 42 1 4.8618 7.8773 6.0685 43 1 3.1023 8.0188 6.2964 44 1 3.8269 6.4367 5.9211 45 1 3.6873 9.4179 2.9960 46 1 3.0222 9.7299 4.6175 47 1 4.7816 9.5887 4.3893 48 1 3.3340 5.3937 1.9920 49 1 2.4767 5.6423 3.5318 50 1 2.2166 3.3085 2.7354 51 1 3.1290 3.3639 4.2625 52 1 5.7266 -1.0991 1.0332 53 1 5.4134 -1.9409 -0.5036 54 1 6.0387 -0.2744 -0.5129 There are 68 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 68 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_40_17509452_15065288.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 12:59:40 Heat of formation + Delta-G solvation = 33.738938 kcal Electronic energy + Delta-G solvation = -36011.913638 eV Core-core repulsion = 31708.499174 eV Total energy + Delta-G solvation = -4303.414464 eV No. of doubly occupied orbitals = 68 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 390.161 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -42.15239 -40.30493 -39.67536 -38.39520 -37.29851 -36.87163 -35.02647 -34.67124 -31.76169 -31.34812 -30.85426 -29.35961 -28.16210 -27.69674 -25.91466 -25.41824 -23.58928 -23.25904 -22.51451 -21.07712 -20.46728 -19.71081 -19.22612 -19.17094 -18.57508 -18.02697 -17.61384 -17.42339 -17.21730 -16.81287 -16.55873 -16.16767 -15.68757 -15.36414 -15.20732 -15.12027 -14.93431 -14.86851 -14.69427 -14.40985 -14.23143 -14.04263 -13.84343 -13.77156 -13.68085 -13.53865 -13.40316 -13.22944 -13.15392 -13.10296 -13.01280 -12.97156 -12.91604 -12.80720 -12.67511 -12.64465 -12.37783 -12.27532 -12.08239 -11.70177 -11.59188 -11.47458 -11.27243 -11.14300 -10.72958 -10.31836 -9.99652 -9.44565 -4.71380 -0.59264 -0.45986 0.38522 0.68895 0.82231 1.06159 1.33034 1.54497 2.00709 2.09940 2.75979 2.91998 3.01945 3.20406 3.28930 3.43985 3.51524 3.58029 3.66560 3.78078 3.87716 3.91450 3.96016 4.10170 4.12634 4.16981 4.21826 4.23938 4.26495 4.28680 4.36568 4.40166 4.42518 4.44065 4.45209 4.49931 4.60041 4.62527 4.67510 4.70821 4.77189 4.80645 4.87054 4.89238 4.90134 4.91859 4.99530 5.00878 5.16967 5.21558 5.24520 5.28321 5.36393 5.47314 5.55443 6.27480 6.62224 Molecular weight = 390.16amu Principal moments of inertia in cm(-1) A = 0.011217 B = 0.003574 C = 0.003117 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2495.515747 B = 7832.681214 C = 8980.242977 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.109 4.109 2 C -0.198 4.198 3 C -0.041 4.041 4 C -0.070 4.070 5 O -0.547 6.547 6 Si 0.710 3.290 7 C -0.680 4.680 8 S 2.725 3.275 9 O -0.978 6.978 10 O -0.991 6.991 11 N -1.078 6.078 12 C 0.145 3.855 13 H 0.069 0.931 14 C -0.144 4.144 15 C -0.113 4.113 16 C -0.107 4.107 17 H 0.114 0.886 18 C -0.001 4.001 19 N -0.370 5.370 20 H 0.435 0.565 21 C -0.056 4.056 22 C -0.048 4.048 23 C -0.136 4.136 24 C -0.125 4.125 25 C -0.082 4.082 26 C -0.117 4.117 27 S 0.164 5.836 28 H 0.109 0.891 29 H 0.146 0.854 30 H 0.083 0.917 31 H 0.137 0.863 32 H 0.401 0.599 33 H -0.256 1.256 34 H -0.344 1.344 35 H 0.428 0.572 36 H 0.088 0.912 37 H 0.044 0.956 38 H 0.072 0.928 39 H 0.064 0.936 40 H 0.134 0.866 41 H 0.139 0.861 42 H 0.118 0.882 43 H 0.128 0.872 44 H 0.126 0.874 45 H 0.124 0.876 46 H 0.127 0.873 47 H 0.117 0.883 48 H 0.081 0.919 49 H 0.106 0.894 50 H 0.083 0.917 51 H 0.096 0.904 52 H 0.108 0.892 53 H 0.090 0.910 54 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.948 24.142 22.751 33.540 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C -0.316 4.316 3 C -0.051 4.051 4 C -0.182 4.182 5 O -0.358 6.358 6 Si 0.620 3.380 7 C -0.779 4.779 8 S 2.812 3.188 9 O -0.968 6.968 10 O -0.981 6.981 11 N -0.845 5.845 12 C 0.039 3.961 13 H 0.087 0.913 14 C -0.183 4.183 15 C -0.151 4.151 16 C -0.125 4.125 17 H 0.132 0.868 18 C -0.124 4.124 19 N 0.052 4.948 20 H 0.273 0.727 21 C -0.198 4.198 22 C -0.190 4.190 23 C -0.173 4.173 24 C -0.164 4.164 25 C -0.203 4.203 26 C -0.175 4.175 27 S 0.431 5.569 28 H 0.128 0.872 29 H 0.163 0.837 30 H 0.100 0.900 31 H 0.154 0.846 32 H 0.253 0.747 33 H -0.183 1.183 34 H -0.275 1.275 35 H 0.268 0.732 36 H 0.106 0.894 37 H 0.063 0.937 38 H 0.091 0.909 39 H 0.083 0.917 40 H 0.153 0.847 41 H 0.157 0.843 42 H 0.136 0.864 43 H 0.147 0.853 44 H 0.144 0.856 45 H 0.142 0.858 46 H 0.145 0.855 47 H 0.135 0.865 48 H 0.100 0.900 49 H 0.125 0.875 50 H 0.101 0.899 51 H 0.114 0.886 52 H 0.126 0.874 53 H 0.109 0.891 54 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -4.467 22.246 21.710 31.403 hybrid contribution 0.464 1.334 -1.366 1.964 sum -4.004 23.579 20.345 31.399 Atomic orbital electron populations 1.20451 0.85820 1.05318 1.04809 1.24549 1.01188 0.94981 1.10927 1.17733 0.89895 0.95488 1.02026 1.24712 1.04851 0.87957 1.00681 1.86748 1.52331 1.25898 1.70852 0.93968 0.79301 0.81203 0.83489 1.29675 1.12922 1.13228 1.22042 1.00831 0.72419 0.72789 0.72763 1.93569 1.86611 1.75033 1.41546 1.93566 1.43671 1.79501 1.81368 1.55186 1.85506 1.26678 1.17116 1.20984 0.97059 0.99576 0.78526 0.91326 1.22054 0.96995 0.97544 1.01744 1.21428 0.98446 0.93730 1.01527 1.21671 0.95809 0.91714 1.03335 0.86767 1.23950 0.93292 0.93507 1.01606 1.44862 1.18517 1.15700 1.15695 0.72705 1.24227 1.09354 1.08682 0.77554 1.24129 1.09468 0.76704 1.08656 1.21921 0.96945 0.95681 1.02777 1.21871 0.96500 0.95839 1.02157 1.24731 1.01253 0.95772 0.98499 1.20959 0.88201 1.02691 1.05696 1.84495 0.94749 1.08344 1.69318 0.87222 0.83651 0.90003 0.84557 0.74720 1.18290 1.27543 0.73219 0.89366 0.93693 0.90891 0.91707 0.84741 0.84332 0.86354 0.85343 0.85572 0.85769 0.85454 0.86471 0.90049 0.87533 0.89858 0.88579 0.87404 0.89130 0.90110 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 2.61 7.96 71.24 0.57 3.18 16 2 C -0.20 3.47 6.23 24.59 0.15 3.62 16 3 C -0.04 0.70 5.30 -20.92 -0.11 0.59 16 4 C -0.07 1.72 2.11 71.24 0.15 1.87 16 5 O -0.55 11.78 7.41 -126.28 -0.94 10.85 16 6 Si 0.71 -15.38 25.51 68.60 1.75 -13.63 16 7 C -0.68 9.00 5.63 21.21 0.12 9.12 16 8 S 2.73 -38.67 4.56 -56.49 -0.26 -38.92 16 9 O -0.98 5.67 15.57 -118.74 -1.85 3.82 16 10 O -0.99 9.05 14.15 -128.00 -1.81 7.24 16 11 N -1.08 31.24 3.08 -169.40 -0.52 30.72 16 12 C 0.15 -4.85 2.98 44.99 0.13 -4.72 16 13 H 0.07 -1.98 7.90 -2.39 -0.02 -2.00 16 14 C -0.14 4.76 5.64 30.60 0.17 4.94 16 15 C -0.11 4.70 5.05 30.60 0.15 4.86 16 16 C -0.11 5.76 2.07 -10.79 -0.02 5.74 16 17 H 0.11 -6.47 6.18 -2.39 -0.01 -6.48 16 18 C 0.00 0.08 4.12 86.30 0.36 0.44 16 19 N -0.37 24.78 0.66 -948.82 -0.62 24.15 16 20 H 0.43 -30.70 6.62 -89.70 -0.59 -31.30 16 21 C -0.06 3.62 8.93 127.69 1.14 4.76 16 22 C -0.05 3.06 9.19 127.69 1.17 4.23 16 23 C -0.14 7.19 4.77 30.59 0.15 7.33 16 24 C -0.12 5.46 5.63 30.59 0.17 5.64 16 25 C -0.08 0.96 6.50 24.59 0.16 1.12 16 26 C -0.12 1.42 9.11 71.24 0.65 2.07 16 27 S 0.16 -2.39 23.31 -56.49 -1.32 -3.71 16 28 H 0.11 -2.79 8.14 -2.39 -0.02 -2.81 16 29 H 0.15 -4.74 6.81 -2.39 -0.02 -4.75 16 30 H 0.08 -1.76 3.93 -2.39 -0.01 -1.77 16 31 H 0.14 -4.82 5.77 -2.39 -0.01 -4.83 16 32 H 0.40 -12.74 8.74 -74.05 -0.65 -13.39 16 33 H -0.26 5.31 7.11 99.48 0.71 6.02 16 34 H -0.34 2.51 6.99 99.48 0.69 3.21 16 35 H 0.43 -15.08 6.08 -96.74 -0.59 -15.67 16 36 H 0.09 -3.12 8.14 -2.38 -0.02 -3.14 16 37 H 0.04 -1.04 7.62 -2.39 -0.02 -1.06 16 38 H 0.07 -2.96 8.14 -2.39 -0.02 -2.98 16 39 H 0.06 -2.53 7.45 -2.39 -0.02 -2.54 16 40 H 0.13 -8.18 8.09 -2.39 -0.02 -8.20 16 41 H 0.14 -8.57 8.09 -2.39 -0.02 -8.59 16 42 H 0.12 -7.41 8.11 -2.39 -0.02 -7.43 16 43 H 0.13 -8.29 8.14 -2.39 -0.02 -8.31 16 44 H 0.13 -8.10 6.19 -2.39 -0.01 -8.11 16 45 H 0.12 -7.92 8.11 -2.39 -0.02 -7.94 16 46 H 0.13 -8.16 8.14 -2.39 -0.02 -8.18 16 47 H 0.12 -7.32 8.14 -2.39 -0.02 -7.34 16 48 H 0.08 -4.26 6.50 -2.39 -0.02 -4.27 16 49 H 0.11 -6.49 6.62 -2.39 -0.02 -6.50 16 50 H 0.08 -3.61 6.06 -2.39 -0.01 -3.62 16 51 H 0.10 -4.34 8.14 -2.38 -0.02 -4.36 16 52 H 0.11 -1.59 8.14 -2.39 -0.02 -1.61 16 53 H 0.09 -1.31 8.14 -2.39 -0.02 -1.33 16 54 H 0.08 -0.72 6.16 -2.39 -0.01 -0.73 16 Total: 1.00 -93.41 403.88 -1.32 -94.73 By element: Atomic # 1 Polarization: -169.16 SS G_CDS: -0.86 Total: -170.02 kcal Atomic # 6 Polarization: 49.66 SS G_CDS: 5.11 Total: 54.78 kcal Atomic # 7 Polarization: 56.02 SS G_CDS: -1.15 Total: 54.88 kcal Atomic # 8 Polarization: 26.50 SS G_CDS: -4.60 Total: 21.90 kcal Atomic # 14 Polarization: -15.38 SS G_CDS: 1.75 Total: -13.63 kcal Atomic # 16 Polarization: -41.06 SS G_CDS: -1.57 Total: -42.63 kcal Total: -93.41 -1.32 -94.73 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_40_17509452_15065288.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 128.468 kcal (2) G-P(sol) polarization free energy of solvation -93.413 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 35.055 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.316 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -94.729 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.739 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds