Wall clock time and date at job start Tue Mar 9 2021 12:59:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52976 * 109.43189 * 2 1 4 4 C 1.53122 * 109.43566 * 178.30960 * 3 2 1 5 5 C 1.52847 * 109.21937 * 58.02173 * 4 3 2 6 6 C 1.53206 * 113.46315 * 172.71966 * 5 4 3 7 7 C 1.53844 * 83.16606 * 219.06245 * 6 5 4 8 8 N 1.46773 * 113.40156 * 73.94036 * 5 4 3 9 9 S 1.65603 * 136.10088 * 321.83771 * 8 5 4 10 10 O 1.42099 * 106.39962 * 323.67635 * 9 8 5 11 11 O 1.42094 * 106.40246 * 190.75339 * 9 8 5 12 12 C 1.76207 * 107.21683 * 77.21404 * 9 8 5 13 13 C 1.33386 * 125.19856 * 83.99113 * 12 9 8 14 14 C 1.50690 * 122.54306 * 0.02562 * 13 12 9 15 15 O 1.42902 * 109.47222 * 74.73510 * 14 13 12 16 16 Si 1.86305 * 109.47232 * 194.73410 * 14 13 12 17 17 C 1.38426 * 114.91277 * 179.75597 * 13 12 9 18 18 C 1.33389 * 114.92896 * 0.24661 * 17 13 12 19 19 S 1.75886 * 125.20162 * 264.12884 * 12 9 8 20 20 C 1.52838 * 112.68125 * 303.39039 * 5 4 3 21 21 C 1.52966 * 109.43588 * 239.78423 * 2 1 3 22 22 H 1.09003 * 109.47152 * 60.00177 * 1 2 3 23 23 H 1.09000 * 109.46905 * 179.97438 * 1 2 3 24 24 H 1.08992 * 109.47257 * 299.99710 * 1 2 3 25 25 H 1.08998 * 109.39733 * 119.88978 * 2 1 3 26 26 H 1.09000 * 109.47395 * 58.32347 * 3 2 1 27 27 H 1.08992 * 109.48123 * 298.30655 * 3 2 1 28 28 H 1.09000 * 109.51727 * 298.09095 * 4 3 2 29 29 H 1.09001 * 109.55423 * 177.96683 * 4 3 2 30 30 H 1.09001 * 114.21882 * 332.82226 * 6 5 4 31 31 H 1.08995 * 114.22048 * 105.69240 * 6 5 4 32 32 H 1.08998 * 113.45380 * 271.27696 * 7 6 5 33 33 H 1.09006 * 113.55517 * 140.78485 * 7 6 5 34 34 H 1.09001 * 109.47361 * 314.73093 * 14 13 12 35 35 H 0.96704 * 113.99490 * 59.99900 * 15 14 13 36 36 H 1.48502 * 110.00174 * 180.02562 * 16 14 13 37 37 H 1.48501 * 109.99860 * 301.32193 * 16 14 13 38 38 H 1.08007 * 122.53287 * 180.22826 * 17 13 12 39 39 H 1.07996 * 125.20902 * 179.97438 * 18 17 13 40 40 H 1.09004 * 109.51621 * 176.51732 * 20 5 4 41 41 H 1.08998 * 109.51576 * 296.67179 * 20 5 4 42 42 H 1.09004 * 109.47396 * 301.67061 * 21 2 1 43 43 H 1.09004 * 109.47687 * 61.67892 * 21 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0390 1.4426 0.0000 4 6 3.5696 1.4429 0.0426 5 6 4.1066 0.6667 -1.1596 6 6 5.6285 0.7542 -1.3119 7 6 5.2894 0.8410 -2.8100 8 7 3.9817 1.3958 -2.4273 9 16 2.8601 2.3960 -3.1231 10 8 1.5858 1.9012 -2.7352 11 8 3.2517 2.5558 -4.4797 12 6 3.0311 3.9780 -2.3662 13 6 3.9126 4.9117 -2.7271 14 6 4.8892 4.7110 -3.8570 15 8 4.2016 4.8166 -5.1053 16 14 6.2181 6.0137 -3.7680 17 6 3.8583 6.0813 -1.9887 18 6 2.9362 6.0955 -1.0249 19 16 2.0679 4.5659 -1.0170 20 6 3.5697 -0.7627 -1.2258 21 6 2.0391 -0.7259 -1.2465 22 1 -0.3633 0.5138 -0.8900 23 1 -0.3633 -1.0277 -0.0005 24 1 -0.3633 0.5137 0.8899 25 1 1.8921 -0.5123 0.8914 26 1 1.6510 1.9648 0.8746 27 1 1.7004 1.9475 -0.9047 28 1 3.9084 0.9682 0.9634 29 1 3.9354 2.4691 0.0062 30 1 6.0682 1.6607 -0.8958 31 1 6.1593 -0.1546 -1.0280 32 1 5.2224 -0.1320 -3.2967 33 1 5.9157 1.5448 -3.3583 34 1 5.3426 3.7233 -3.7743 35 1 3.7730 5.6717 -5.2471 36 1 7.1874 5.8271 -4.8775 37 1 5.6098 7.3661 -3.8476 38 1 4.5132 6.9190 -2.1784 39 1 2.7514 6.9197 -0.3520 40 1 3.9345 -1.2472 -2.1315 41 1 3.9086 -1.3198 -0.3523 42 1 1.6511 -1.7446 -1.2576 43 1 1.7002 -0.1983 -2.1381 There are 58 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 58 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_40_17514094_13652106.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 12:59:52 Heat of formation + Delta-G solvation = -21.827247 kcal Electronic energy + Delta-G solvation = -28928.345997 eV Core-core repulsion = 25195.527988 eV Total energy + Delta-G solvation = -3732.818009 eV No. of doubly occupied orbitals = 58 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 344.095 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -41.64203 -40.11259 -38.49969 -37.45263 -37.15165 -36.93616 -32.04655 -31.79080 -31.32222 -29.61305 -28.01404 -26.59266 -24.33662 -23.99022 -23.10114 -22.02129 -21.05054 -21.02806 -19.55643 -18.90179 -18.37973 -18.22203 -16.85510 -16.70155 -16.46970 -16.04866 -15.71858 -15.49332 -15.43943 -15.24080 -15.07543 -14.99898 -14.31261 -14.21594 -14.01153 -13.84490 -13.79474 -13.52854 -13.32744 -13.21115 -13.20624 -12.93371 -12.81150 -12.48945 -12.44780 -12.35048 -12.23239 -11.97895 -11.75540 -11.67560 -11.56590 -11.18789 -11.04505 -10.72016 -10.66661 -10.42214 -9.98216 -9.63939 -4.98803 -0.88941 -0.57213 0.29905 0.72089 1.18806 1.24396 1.55849 1.92614 1.94600 2.60297 3.13910 3.35089 3.47272 3.52610 3.72817 3.81348 3.86896 4.03893 4.09051 4.15449 4.18026 4.30757 4.32323 4.48269 4.52130 4.56749 4.64144 4.68307 4.75391 4.76898 4.84621 4.88912 4.90689 4.97434 5.07447 5.11644 5.13628 5.13797 5.18002 5.30220 5.33084 5.37571 5.40977 5.53580 5.63574 5.81257 6.45914 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.080 4.080 3 C -0.155 4.155 4 C -0.131 4.131 5 C 0.182 3.818 6 C -0.125 4.125 7 C 0.115 3.885 8 N -1.037 6.037 9 S 2.727 3.273 10 O -0.970 6.970 11 O -0.963 6.963 12 C -0.789 4.789 13 C 0.009 3.991 14 C -0.104 4.104 15 O -0.522 6.522 16 Si 0.794 3.206 17 C -0.175 4.175 18 C -0.153 4.153 19 S 0.218 5.782 20 C -0.117 4.117 21 C -0.130 4.130 22 H 0.038 0.962 23 H 0.054 0.946 24 H 0.058 0.942 25 H 0.081 0.919 26 H 0.069 0.931 27 H 0.074 0.926 28 H 0.104 0.896 29 H 0.076 0.924 30 H 0.112 0.888 31 H 0.112 0.888 32 H 0.092 0.908 33 H 0.084 0.916 34 H 0.114 0.886 35 H 0.379 0.621 36 H -0.296 1.296 37 H -0.265 1.265 38 H 0.175 0.825 39 H 0.209 0.791 40 H 0.073 0.927 41 H 0.102 0.898 42 H 0.062 0.938 43 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.357 1.778 8.128 10.471 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.099 4.099 3 C -0.193 4.193 4 C -0.169 4.169 5 C 0.095 3.905 6 C -0.164 4.164 7 C -0.009 4.009 8 N -0.879 5.879 9 S 2.820 3.180 10 O -0.960 6.960 11 O -0.954 6.954 12 C -0.992 4.992 13 C -0.009 4.009 14 C -0.213 4.213 15 O -0.329 6.329 16 Si 0.696 3.304 17 C -0.204 4.204 18 C -0.290 4.290 19 S 0.485 5.515 20 C -0.156 4.156 21 C -0.168 4.168 22 H 0.057 0.943 23 H 0.073 0.927 24 H 0.077 0.923 25 H 0.099 0.901 26 H 0.087 0.913 27 H 0.092 0.908 28 H 0.123 0.877 29 H 0.094 0.906 30 H 0.130 0.870 31 H 0.130 0.870 32 H 0.110 0.890 33 H 0.103 0.897 34 H 0.132 0.868 35 H 0.227 0.773 36 H -0.224 1.224 37 H -0.191 1.191 38 H 0.192 0.808 39 H 0.226 0.774 40 H 0.092 0.908 41 H 0.121 0.879 42 H 0.081 0.919 43 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 4.927 1.176 7.793 9.294 hybrid contribution -0.380 1.294 -1.650 2.131 sum 4.547 2.470 6.142 8.031 Atomic orbital electron populations 1.21839 0.96275 1.01400 1.01226 1.20979 0.94912 0.95850 0.98138 1.22223 0.96010 0.97483 1.03547 1.21990 0.95168 1.01094 0.98622 1.21519 0.95989 0.91164 0.81803 1.23629 0.93220 1.05559 0.94034 1.22849 0.80150 0.99167 0.98737 1.60061 1.36181 1.59213 1.32446 1.00445 0.72684 0.72636 0.72282 1.93500 1.40361 1.79147 1.83034 1.93639 1.83109 1.86526 1.32115 1.35590 1.15621 1.27926 1.20031 1.19268 0.93767 0.92447 0.95437 1.25602 1.00379 1.13241 0.82067 1.86897 1.71404 1.39622 1.34944 0.94102 0.75816 0.73749 0.86757 1.20486 1.02911 0.99180 0.97842 1.26687 0.98099 1.02118 1.02137 1.84514 1.34140 1.07679 1.25156 1.21798 0.95003 0.94756 1.04056 1.21748 0.96166 1.00231 0.98673 0.94286 0.92694 0.92327 0.90091 0.91250 0.90784 0.87742 0.90569 0.86973 0.87019 0.89017 0.89734 0.86817 0.77320 1.22358 1.19075 0.80782 0.77442 0.90815 0.87947 0.91906 0.93044 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.72 9.19 71.98 0.66 -0.06 16 2 C -0.08 -0.19 2.67 -10.81 -0.03 -0.22 16 3 C -0.15 -0.29 4.36 30.63 0.13 -0.16 16 4 C -0.13 0.42 5.26 30.58 0.16 0.58 16 5 C 0.18 -0.52 0.93 -0.07 0.00 -0.52 16 6 C -0.12 1.08 7.63 30.95 0.24 1.31 16 7 C 0.12 -0.42 8.34 82.96 0.69 0.27 16 8 N -1.04 -1.94 3.86 -508.47 -1.96 -3.91 16 9 S 2.73 25.56 5.40 -56.49 -0.31 25.26 16 10 O -0.97 -13.25 12.50 -128.00 -1.60 -14.86 16 11 O -0.96 -15.48 14.59 -119.53 -1.74 -17.23 16 12 C -0.79 -3.72 6.52 66.72 0.44 -3.28 16 13 C 0.01 0.02 5.13 -20.92 -0.11 -0.09 16 14 C -0.10 -0.25 1.82 71.23 0.13 -0.13 16 15 O -0.52 -4.38 11.02 -128.48 -1.42 -5.79 16 16 Si 0.79 -2.44 30.46 68.60 2.09 -0.35 16 17 C -0.18 0.58 8.74 21.22 0.19 0.76 16 18 C -0.15 0.69 11.23 66.72 0.75 1.44 16 19 S 0.22 0.21 21.09 -56.49 -1.19 -0.98 16 20 C -0.12 0.27 5.22 30.58 0.16 0.42 16 21 C -0.13 -0.47 5.15 30.62 0.16 -0.31 16 22 H 0.04 0.37 8.14 -2.39 -0.02 0.35 16 23 H 0.05 0.20 8.14 -2.39 -0.02 0.18 16 24 H 0.06 0.17 8.14 -2.39 -0.02 0.15 16 25 H 0.08 -0.07 8.14 -2.39 -0.02 -0.09 16 26 H 0.07 0.03 8.14 -2.39 -0.02 0.01 16 27 H 0.07 0.44 2.48 -2.39 -0.01 0.44 16 28 H 0.10 -0.73 8.14 -2.39 -0.02 -0.75 16 29 H 0.08 -0.31 8.09 -2.39 -0.02 -0.33 16 30 H 0.11 -1.23 8.12 -2.39 -0.02 -1.25 16 31 H 0.11 -1.38 8.10 -2.39 -0.02 -1.40 16 32 H 0.09 -0.44 7.27 -2.39 -0.02 -0.46 16 33 H 0.08 -0.42 7.73 -2.38 -0.02 -0.44 16 34 H 0.11 0.22 6.99 -2.39 -0.02 0.21 16 35 H 0.38 0.53 8.70 -74.05 -0.64 -0.12 16 36 H -0.30 -1.34 7.11 99.48 0.71 -0.64 16 37 H -0.27 0.41 6.80 99.48 0.68 1.09 16 38 H 0.18 -1.36 5.53 -2.91 -0.02 -1.38 16 39 H 0.21 -2.34 8.06 -2.91 -0.02 -2.36 16 40 H 0.07 -0.20 7.00 -2.39 -0.02 -0.21 16 41 H 0.10 -0.66 8.14 -2.39 -0.02 -0.68 16 42 H 0.06 0.18 8.14 -2.38 -0.02 0.16 16 43 H 0.05 0.50 5.86 -2.39 -0.01 0.49 16 Total: 0.00 -22.70 344.07 -2.17 -24.86 By element: Atomic # 1 Polarization: -7.44 SS G_CDS: 0.40 Total: -7.04 kcal Atomic # 6 Polarization: -3.53 SS G_CDS: 3.56 Total: 0.03 kcal Atomic # 7 Polarization: -1.94 SS G_CDS: -1.96 Total: -3.91 kcal Atomic # 8 Polarization: -33.11 SS G_CDS: -4.76 Total: -37.87 kcal Atomic # 14 Polarization: -2.44 SS G_CDS: 2.09 Total: -0.35 kcal Atomic # 16 Polarization: 25.78 SS G_CDS: -1.50 Total: 24.28 kcal Total: -22.70 -2.17 -24.86 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_40_17514094_13652106.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.038 kcal (2) G-P(sol) polarization free energy of solvation -22.697 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.659 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.168 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -24.865 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.827 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds