Wall clock time and date at job start Tue Mar 9 2021 12:59:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52967 * 109.43425 * 2 1 4 4 C 1.53122 * 109.44844 * 178.30619 * 3 2 1 5 5 C 1.52853 * 109.22299 * 58.00712 * 4 3 2 6 6 C 1.53200 * 113.45831 * 172.75046 * 5 4 3 7 7 C 1.53543 * 83.27085 * 219.25411 * 6 5 4 8 8 N 1.46783 * 113.40750 * 73.97258 * 5 4 3 9 9 S 1.65602 * 136.09860 * 321.81916 * 8 5 4 10 10 O 1.42102 * 106.39934 * 192.50216 * 9 8 5 11 11 O 1.42091 * 106.40263 * 325.41961 * 9 8 5 12 12 C 1.76197 * 107.21693 * 78.96410 * 9 8 5 13 13 C 1.33379 * 122.54489 * 90.02735 * 12 9 8 14 14 S 1.75883 * 109.60021 * 179.97438 * 13 12 9 15 15 C 1.75894 * 90.96686 * 359.97438 * 14 13 12 16 16 C 1.50696 * 125.20138 * 180.02562 * 15 14 13 17 17 O 1.42902 * 109.47006 * 244.97229 * 16 15 14 18 18 Si 1.86295 * 109.47440 * 4.97381 * 16 15 14 19 19 C 1.33388 * 109.58924 * 359.72845 * 15 14 13 20 20 C 1.52848 * 112.68143 * 303.41499 * 5 4 3 21 21 C 1.52975 * 109.44223 * 239.77997 * 2 1 3 22 22 H 1.08999 * 109.47189 * 60.00759 * 1 2 3 23 23 H 1.09002 * 109.46754 * 180.02562 * 1 2 3 24 24 H 1.08994 * 109.47293 * 300.00247 * 1 2 3 25 25 H 1.08999 * 109.39921 * 119.88710 * 2 1 3 26 26 H 1.08997 * 109.48190 * 58.30879 * 3 2 1 27 27 H 1.09003 * 109.47431 * 298.30088 * 3 2 1 28 28 H 1.08997 * 109.51420 * 177.93030 * 4 3 2 29 29 H 1.08998 * 109.51541 * 298.03604 * 4 3 2 30 30 H 1.08997 * 114.22092 * 332.81927 * 6 5 4 31 31 H 1.08997 * 114.22274 * 105.68533 * 6 5 4 32 32 H 1.09004 * 113.45589 * 271.03726 * 7 6 5 33 33 H 1.09000 * 113.46099 * 140.62327 * 7 6 5 34 34 H 1.08000 * 125.20212 * 0.02562 * 13 12 9 35 35 H 1.09002 * 109.47265 * 124.97723 * 16 15 14 36 36 H 0.96700 * 113.99792 * 59.99791 * 17 16 15 37 37 H 1.48504 * 110.00010 * 180.02562 * 18 16 15 38 38 H 1.48502 * 109.99905 * 301.31713 * 18 16 15 39 39 H 1.08008 * 122.53432 * 180.24336 * 19 15 14 40 40 H 1.08997 * 109.50940 * 176.50925 * 20 5 4 41 41 H 1.09001 * 109.50687 * 296.60757 * 20 5 4 42 42 H 1.09001 * 109.46464 * 61.69396 * 21 2 1 43 43 H 1.08996 * 109.48340 * 301.68609 * 21 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0390 1.4425 0.0000 4 6 3.5696 1.4431 0.0427 5 6 4.1069 0.6666 -1.1593 6 6 5.6289 0.7538 -1.3109 7 6 5.2936 0.8457 -2.8064 8 7 3.9827 1.3956 -2.4273 9 16 2.8615 2.3956 -3.1239 10 8 3.2307 2.5222 -4.4902 11 8 1.5883 1.9255 -2.7032 12 6 3.0660 3.9905 -2.4034 13 6 3.8877 4.9085 -2.9142 14 16 3.8274 6.3662 -1.9318 15 6 2.6542 5.6251 -0.8510 16 6 2.0460 6.2888 0.3576 17 8 2.4599 5.5989 1.5386 18 14 2.6120 8.0616 0.4434 19 6 2.3804 4.3882 -1.2685 20 6 3.5698 -0.7629 -1.2255 21 6 2.0392 -0.7261 -1.2465 22 1 -0.3633 0.5137 -0.8900 23 1 -0.3633 -1.0277 0.0005 24 1 -0.3633 0.5138 0.8899 25 1 1.8921 -0.5123 0.8914 26 1 1.6509 1.9649 0.8743 27 1 1.7004 1.9473 -0.9048 28 1 3.9345 2.4695 0.0056 29 1 3.9084 0.9693 0.9640 30 1 6.0685 1.6602 -0.8948 31 1 6.1594 -0.1549 -1.0266 32 1 5.2310 -0.1255 -3.2975 33 1 5.9205 1.5533 -3.3490 34 1 4.4964 4.7773 -3.7966 35 1 0.9591 6.2577 0.2807 36 1 3.4176 5.5865 1.6716 37 1 2.0195 8.7270 1.6314 38 1 4.0941 8.1186 0.5164 39 1 1.6802 3.7442 -0.7572 40 1 3.9348 -1.2473 -2.1311 41 1 3.9093 -1.3200 -0.3523 42 1 1.7006 -0.1982 -2.1380 43 1 1.6513 -1.7446 -1.2578 There are 58 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 58 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_40_17514094_15065232.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 12:59:59 Heat of formation + Delta-G solvation = -29.429302 kcal Electronic energy + Delta-G solvation = -28469.836031 eV Core-core repulsion = 24736.688372 eV Total energy + Delta-G solvation = -3733.147659 eV No. of doubly occupied orbitals = 58 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 344.095 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -41.78105 -39.58286 -38.46448 -37.71866 -37.39838 -36.79254 -32.01675 -31.88757 -31.76329 -29.76374 -27.26835 -26.60222 -24.94648 -24.06308 -23.18947 -21.95094 -21.46241 -20.73198 -19.35529 -18.90942 -18.26311 -17.94509 -17.78756 -16.76036 -16.48201 -16.33284 -15.67115 -15.56413 -15.34456 -15.07303 -15.01044 -14.95615 -14.42622 -14.25075 -14.07164 -13.91417 -13.80878 -13.75835 -13.26342 -13.24294 -13.16250 -13.03363 -12.90852 -12.54677 -12.48332 -12.35225 -12.27833 -12.03176 -11.90057 -11.68473 -11.53827 -11.16341 -10.97888 -10.85560 -10.77414 -10.29693 -10.06152 -9.87379 -5.18882 -0.81930 -0.49804 0.27758 0.53689 0.98433 1.08621 1.41093 1.77636 1.98540 2.71480 3.01557 3.16377 3.31373 3.48458 3.56891 3.71960 3.78633 3.79886 4.06512 4.10060 4.16450 4.28261 4.33048 4.36510 4.38635 4.45008 4.55696 4.56747 4.63668 4.69970 4.76272 4.86781 4.91327 4.93450 4.96937 5.02996 5.07042 5.11692 5.16814 5.20706 5.31130 5.40134 5.53156 5.55264 5.56630 5.83517 6.18485 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.080 4.080 3 C -0.156 4.156 4 C -0.129 4.129 5 C 0.191 3.809 6 C -0.147 4.147 7 C 0.129 3.871 8 N -1.034 6.034 9 S 2.724 3.276 10 O -0.954 6.954 11 O -0.934 6.934 12 C -0.684 4.684 13 C -0.083 4.083 14 S 0.157 5.843 15 C -0.226 4.226 16 C -0.033 4.033 17 O -0.520 6.520 18 Si 0.650 3.350 19 C -0.046 4.046 20 C -0.118 4.118 21 C -0.125 4.125 22 H 0.063 0.937 23 H 0.051 0.949 24 H 0.051 0.949 25 H 0.063 0.937 26 H 0.064 0.936 27 H 0.101 0.899 28 H 0.069 0.931 29 H 0.082 0.918 30 H 0.095 0.905 31 H 0.089 0.911 32 H 0.088 0.912 33 H 0.079 0.921 34 H 0.184 0.816 35 H 0.130 0.870 36 H 0.377 0.623 37 H -0.232 1.232 38 H -0.239 1.239 39 H 0.161 0.839 40 H 0.071 0.929 41 H 0.080 0.920 42 H 0.079 0.921 43 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.179 0.894 1.424 4.505 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.099 4.099 3 C -0.193 4.193 4 C -0.167 4.167 5 C 0.104 3.896 6 C -0.187 4.187 7 C 0.004 3.996 8 N -0.873 5.873 9 S 2.815 3.185 10 O -0.945 6.945 11 O -0.924 6.924 12 C -0.783 4.783 13 C -0.222 4.222 14 S 0.421 5.579 15 C -0.344 4.344 16 C -0.146 4.146 17 O -0.326 6.326 18 Si 0.549 3.451 19 C -0.075 4.075 20 C -0.157 4.157 21 C -0.162 4.162 22 H 0.082 0.918 23 H 0.070 0.930 24 H 0.070 0.930 25 H 0.082 0.918 26 H 0.083 0.917 27 H 0.118 0.882 28 H 0.088 0.912 29 H 0.101 0.899 30 H 0.113 0.887 31 H 0.108 0.892 32 H 0.106 0.894 33 H 0.097 0.903 34 H 0.201 0.799 35 H 0.147 0.853 36 H 0.224 0.776 37 H -0.155 1.155 38 H -0.163 1.163 39 H 0.178 0.822 40 H 0.090 0.910 41 H 0.099 0.901 42 H 0.098 0.902 43 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 3.893 2.819 1.154 4.943 hybrid contribution 0.253 -1.511 0.921 1.788 sum 4.147 1.308 2.075 4.818 Atomic orbital electron populations 1.21825 0.95191 1.01476 1.02154 1.20945 0.95738 0.95501 0.97676 1.22347 0.94213 0.98030 1.04693 1.21906 0.96940 1.00277 0.97609 1.21281 0.94068 0.91696 0.82547 1.23582 0.95246 1.03720 0.96137 1.22472 0.81083 0.99019 0.97007 1.60095 1.35788 1.59688 1.31771 1.00968 0.72706 0.72482 0.72354 1.93584 1.83678 1.86759 1.30454 1.93502 1.38153 1.79103 1.81636 1.30080 1.11403 1.25210 1.11624 1.25875 0.98720 0.95867 1.01781 1.84420 1.38935 1.15645 1.18936 1.24999 1.05780 0.99532 1.04082 1.24400 1.03522 1.05484 0.81184 1.86653 1.28218 1.76318 1.41433 0.95154 0.82408 0.76794 0.90783 1.19815 0.98659 0.95727 0.93254 1.21759 0.96900 0.94042 1.02960 1.21731 0.94122 1.00727 0.99665 0.91828 0.93021 0.93030 0.91846 0.91710 0.88171 0.91229 0.89913 0.88692 0.89236 0.89356 0.90267 0.79923 0.85256 0.77569 1.15522 1.16339 0.82201 0.90996 0.90126 0.90212 0.91852 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 29. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.25 9.19 37.16 0.34 0.10 16 2 C -0.08 -0.08 2.67 -90.65 -0.24 -0.32 16 3 C -0.16 -0.12 3.95 -26.69 -0.11 -0.23 16 4 C -0.13 0.12 5.26 -26.74 -0.14 -0.02 16 5 C 0.19 -0.23 0.93 -137.24 -0.13 -0.36 16 6 C -0.15 0.47 7.61 -26.35 -0.20 0.27 16 7 C 0.13 -0.27 8.33 -8.94 -0.07 -0.35 16 8 N -1.03 0.04 3.86 -112.21 -0.43 -0.39 16 9 S 2.72 6.53 5.73 -107.50 -0.62 5.91 16 10 O -0.95 -4.94 17.61 -57.17 -1.01 -5.95 16 11 O -0.93 -3.80 12.29 -57.17 -0.70 -4.51 16 12 C -0.68 -0.72 5.89 -41.21 -0.24 -0.96 16 13 C -0.08 0.01 10.70 29.03 0.31 0.32 16 14 S 0.16 -0.15 20.60 -107.50 -2.21 -2.37 16 15 C -0.23 0.04 5.70 -36.00 -0.21 -0.17 16 16 C -0.03 0.03 2.96 36.00 0.11 0.13 16 17 O -0.52 -0.03 12.88 -35.23 -0.45 -0.49 16 18 Si 0.65 -0.91 30.98 -169.99 -5.27 -6.18 16 19 C -0.05 -0.04 8.60 -41.21 -0.35 -0.39 16 20 C -0.12 0.12 5.22 -26.75 -0.14 -0.02 16 21 C -0.12 -0.12 5.15 -26.68 -0.14 -0.26 16 22 H 0.06 0.19 8.14 -51.93 -0.42 -0.24 16 23 H 0.05 0.06 8.14 -51.93 -0.42 -0.36 16 24 H 0.05 0.07 8.14 -51.93 -0.42 -0.36 16 25 H 0.06 0.02 8.14 -51.93 -0.42 -0.40 16 26 H 0.06 0.06 8.14 -51.93 -0.42 -0.37 16 27 H 0.10 0.18 1.97 -51.96 -0.10 0.08 16 28 H 0.07 -0.07 7.60 -51.93 -0.39 -0.47 16 29 H 0.08 -0.14 8.14 -51.93 -0.42 -0.56 16 30 H 0.09 -0.34 8.12 -51.93 -0.42 -0.76 16 31 H 0.09 -0.39 8.10 -51.93 -0.42 -0.81 16 32 H 0.09 -0.26 7.29 -51.93 -0.38 -0.64 16 33 H 0.08 -0.23 8.14 -51.93 -0.42 -0.66 16 34 H 0.18 -0.33 8.00 -52.49 -0.42 -0.75 16 35 H 0.13 -0.19 7.96 -51.93 -0.41 -0.61 16 36 H 0.38 -1.05 8.70 45.56 0.40 -0.66 16 37 H -0.23 -0.31 7.11 56.52 0.40 0.10 16 38 H -0.24 -0.01 7.11 56.52 0.40 0.39 16 39 H 0.16 0.16 5.46 -52.48 -0.29 -0.12 16 40 H 0.07 -0.11 7.02 -51.93 -0.36 -0.48 16 41 H 0.08 -0.17 8.14 -51.93 -0.42 -0.59 16 42 H 0.08 0.23 5.93 -51.93 -0.31 -0.08 16 43 H 0.06 0.03 8.14 -51.93 -0.42 -0.39 16 LS Contribution 349.75 15.07 5.27 5.27 Total: 0.00 -6.94 349.75 -12.75 -19.69 By element: Atomic # 1 Polarization: -2.62 SS G_CDS: -6.12 Total: -8.73 kcal Atomic # 6 Polarization: -1.04 SS G_CDS: -1.21 Total: -2.25 kcal Atomic # 7 Polarization: 0.04 SS G_CDS: -0.43 Total: -0.39 kcal Atomic # 8 Polarization: -8.78 SS G_CDS: -2.16 Total: -10.94 kcal Atomic # 14 Polarization: -0.91 SS G_CDS: -5.27 Total: -6.18 kcal Atomic # 16 Polarization: 6.37 SS G_CDS: -2.83 Total: 3.54 kcal Total LS contribution 5.27 Total: 5.27 kcal Total: -6.94 -12.75 -19.69 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_40_17514094_15065232.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.735 kcal (2) G-P(sol) polarization free energy of solvation -6.945 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.680 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.750 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -19.694 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.429 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds